##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921661_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2272403 Sequences flagged as poor quality 0 Sequence length 101 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.507953474801784 31.0 31.0 34.0 27.0 34.0 2 30.54815849125353 31.0 31.0 34.0 26.0 34.0 3 30.60603642927773 33.0 31.0 34.0 26.0 34.0 4 34.08157443904096 37.0 35.0 37.0 30.0 37.0 5 34.086695009643975 37.0 35.0 37.0 30.0 37.0 6 34.13448846881473 37.0 35.0 37.0 30.0 37.0 7 34.04299457446589 37.0 35.0 37.0 30.0 37.0 8 34.024943638958405 37.0 35.0 37.0 30.0 37.0 9 35.588383310530745 39.0 37.0 39.0 30.0 39.0 10-11 35.494080055342295 39.0 37.0 39.0 30.0 39.0 12-13 35.38366632151075 39.0 35.0 39.0 30.0 39.0 14-15 36.52665416301598 40.0 37.0 41.0 29.0 41.0 16-17 36.461863498684 40.0 37.0 41.0 29.0 41.0 18-19 36.43343544256895 40.0 37.0 41.0 29.0 41.0 20-21 36.35642225432725 40.0 37.0 41.0 28.0 41.0 22-23 36.256805461003175 40.0 36.5 41.0 28.0 41.0 24-25 36.13894256432508 40.0 36.0 41.0 27.0 41.0 26-27 35.99626958774478 40.0 36.0 41.0 27.0 41.0 28-29 35.85371388789753 40.0 36.0 41.0 27.0 41.0 30-31 35.69405030709781 40.0 36.0 41.0 26.5 41.0 32-33 35.501156044944494 39.5 35.0 41.0 25.5 41.0 34-35 35.32400788944567 39.0 35.0 41.0 25.0 41.0 36-37 35.287063738254176 39.0 35.0 41.0 25.0 41.0 38-39 35.45875819561935 39.5 35.0 41.0 25.5 41.0 40-41 35.50998282434938 40.0 35.0 41.0 25.0 41.0 42-43 35.34237655028619 40.0 35.0 41.0 24.5 41.0 44-45 35.21420892332918 40.0 35.0 41.0 24.0 41.0 46-47 35.040458492617724 40.0 35.0 41.0 23.5 41.0 48-49 34.86694327546655 39.0 35.0 41.0 23.0 41.0 50-51 33.148907346100145 37.0 32.5 39.5 18.5 40.0 52-53 33.268919729467 37.5 33.0 39.5 19.0 40.0 54-55 34.18706255008465 39.0 34.0 40.5 20.0 41.0 56-57 34.208911007422536 39.0 34.0 41.0 20.0 41.0 58-59 34.02016785754992 38.0 34.0 41.0 19.5 41.0 60-61 33.76371840734236 38.0 34.0 40.0 18.0 41.0 62-63 33.467944946384954 37.0 34.0 40.0 15.5 41.0 64-65 33.1768592542784 37.0 33.0 40.0 13.0 41.0 66-67 32.83213826948829 36.0 33.0 39.5 10.0 41.0 68-69 32.46494217794995 36.0 33.0 39.0 7.5 41.0 70-71 32.04661387086709 35.0 32.5 39.0 4.0 40.5 72-73 31.674383901095005 35.0 32.0 37.5 2.0 40.0 74-75 31.254425601444815 35.0 32.0 37.0 2.0 39.0 76-77 30.85205661143732 35.0 32.0 36.5 2.0 39.0 78-79 30.478260678233568 35.0 31.0 36.0 2.0 38.5 80-81 30.130597653673227 35.0 31.0 36.0 2.0 37.0 82-83 29.774698193938313 35.0 31.0 35.0 2.0 37.0 84-85 29.46591207633505 35.0 31.0 35.0 2.0 36.5 86-87 29.183244345303187 35.0 30.5 35.0 2.0 36.0 88-89 28.901822652055998 35.0 30.0 35.0 2.0 36.0 90-91 28.612077831264962 34.0 30.0 35.0 2.0 35.5 92-93 28.347698669646185 34.0 29.5 35.0 2.0 35.0 94-95 28.051290418116857 34.0 29.0 35.0 2.0 35.0 96-97 27.741883591950902 34.0 29.0 35.0 2.0 35.0 98-99 27.39991497986933 34.0 29.0 35.0 2.0 35.0 100-101 26.252986156064747 33.0 23.5 34.5 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 70539.0 3 12361.0 4 8740.0 5 6721.0 6 6190.0 7 6501.0 8 6730.0 9 7344.0 10 8124.0 11 8723.0 12 8883.0 13 9129.0 14 9707.0 15 10657.0 16 10890.0 17 11549.0 18 10949.0 19 10399.0 20 10599.0 21 11146.0 22 12220.0 23 13909.0 24 16067.0 25 19013.0 26 22079.0 27 26263.0 28 31131.0 29 36514.0 30 43472.0 31 51723.0 32 64032.0 33 82351.0 34 113329.0 35 161929.0 36 262691.0 37 470819.0 38 505229.0 39 93742.0 40 9.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.89744698426061 17.849358773960667 11.803437778222003 25.449756463556717 2 16.7899924251766 20.071520425599378 37.83509785614882 25.303389293075202 3 19.298895361434003 23.508535363054587 29.765129990117966 27.42743928539344 4 13.660634506399363 15.071960077031038 36.00113265394648 35.266272762623124 5 14.141175724567479 37.28184591645852 34.35332330488024 14.22365505409376 6 34.01339257224969 34.76466174182659 16.736490248244507 14.485455437679207 7 28.80188337526974 31.97143072174486 21.099683067271513 18.12700283571389 8 27.002663307492515 34.13571468498719 20.277140670259115 18.58448133726117 9 27.32991118070427 14.539703747908463 19.34185174720784 38.788533324179426 10-11 25.819396786296107 24.858331240934927 28.17638731515833 21.145884657610633 12-13 26.008471004581036 22.583271251514446 27.81988826373017 23.58836948017435 14-15 23.333769176551282 24.347478867107 24.859814771034827 27.458937185306887 16-17 23.438149276332005 27.336778532943622 25.986019649963026 23.23905254076135 18-19 23.452810375362212 26.801684042264778 27.209293216298907 22.5362123660741 20-21 23.80294770757086 26.13261382918085 27.12870306588877 22.93573539735952 22-23 23.920018313728253 25.856254842572373 26.723339437909416 23.500387405789954 24-25 23.640331202530724 25.879324758177162 26.875582463645685 23.604761575646428 26-27 23.292802976867346 26.13401405023992 27.005656232827015 23.56752674006572 28-29 23.420047435436445 26.546922044010472 26.70470274512013 23.32832777543295 30-31 23.883171683051753 26.22064025614647 26.435437996160005 23.460750064641775 32-33 23.592704793956706 26.27650812239831 26.385763253263516 23.745023830381466 34-35 23.905998256374552 26.290962765543107 26.533406798554932 23.26963217952741 36-37 23.910148128540744 26.052281205051347 26.718519687139214 23.31905097926869 38-39 23.673902821195902 26.139844515497728 26.67731365767049 23.508939005635877 40-41 23.79872327354564 25.98080245593375 26.75708312100033 23.463391149520284 42-43 23.551836361334903 26.050979629406655 26.441393581986265 23.95579042727217 44-45 23.35013238623712 26.04388917916124 26.753638141345732 23.852340293255907 46-47 23.43699049912814 25.96348647360963 26.6468005191714 23.952722508090833 48-49 23.25078835627221 26.17265652802209 26.616742213341933 23.959812902363765 50-51 23.413638477152908 26.091084124953344 26.772317907922872 23.722959489970876 52-53 23.599459987075143 25.857782044415913 26.75864143049186 23.78411653801709 54-55 22.819050155579372 25.808383273139523 27.15792105479573 24.214645516485373 56-57 23.010567576464393 25.97221857811207 26.840749054619835 24.1764647908037 58-59 23.140662608893525 25.83099530689519 26.927758290549143 24.100583793662146 60-61 23.176022827002544 25.778636289465446 27.10977777189756 23.93556311163445 62-63 23.20038998440327 25.6742598387941 27.129557810425425 23.995792366377206 64-65 22.92790509549913 25.56789181387828 27.034756881738236 24.469446208884353 66-67 23.004017264913056 25.693100009634733 26.74696787003825 24.55591485541396 68-69 23.056921825360956 25.67115018728491 26.84591930544747 24.42600868190667 70-71 22.990537142695903 25.517970522866623 26.82420018949523 24.667292144942245 72-73 23.046301256909032 25.8033657206227 26.617413294001185 24.532919728467082 74-75 23.076020849326532 25.87615542369541 26.62370016901165 24.42412355796641 76-77 23.108602705709256 25.540747233599014 26.67235151028276 24.678298550408968 78-79 23.043131509950125 25.66522514982022 26.73911955387872 24.55252378635093 80-81 23.316727614088702 25.77089135246383 26.52290087530098 24.389480158146487 82-83 23.406365211431687 25.765485177190346 26.54389796044825 24.28425165092972 84-85 23.291288957822367 25.81254028275712 26.47419731610722 24.4219734433133 86-87 23.310337313914083 25.965807453162732 26.425573461442355 24.298281771480834 88-89 23.25893003832082 25.616552334919135 26.53678562505141 24.587732001708638 90-91 23.526481149606486 25.472963525426955 26.528610262881752 24.471945062084803 92-93 23.78909427879782 25.329103263212705 26.493107648242294 24.388694809747186 94-95 23.723313904546576 25.14568281978159 26.550695283566263 24.58030799210557 96-97 23.72814367401096 24.923545039944493 26.591968049700466 24.756343236344083 98-99 23.674168994465774 24.983117667322553 26.47374714566178 24.868966192549895 100-101 24.0617186226652 24.957229291798235 26.427500644565654 24.553551440970907 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 190.0 1 154.5 2 201.0 3 300.5 4 270.0 5 275.5 6 434.0 7 671.0 8 965.0 9 1092.5 10 920.5 11 769.0 12 802.5 13 866.5 14 926.5 15 1015.5 16 1099.5 17 1200.5 18 1313.5 19 1437.0 20 1547.5 21 1668.5 22 1785.5 23 1940.0 24 2183.0 25 2476.0 26 3024.5 27 3957.0 28 5357.5 29 7425.5 30 10428.0 31 14795.5 32 21110.0 33 25495.0 34 28530.0 35 33487.0 36 39947.0 37 46697.0 38 52694.0 39 58337.5 40 63395.5 41 68280.5 42 72859.0 43 78041.5 44 82993.0 45 88574.0 46 93000.5 47 96001.5 48 99087.5 49 100650.0 50 101837.0 51 101364.0 52 99286.5 53 97695.5 54 94610.0 55 88115.0 56 79382.5 57 70244.5 58 62535.0 59 54022.0 60 44243.5 61 36544.0 62 30420.5 63 23438.0 64 16858.0 65 12316.0 66 9321.5 67 7252.0 68 5508.5 69 4217.0 70 3225.5 71 2418.0 72 1762.0 73 1322.5 74 1050.5 75 753.5 76 539.0 77 395.5 78 250.0 79 159.0 80 117.0 81 96.0 82 77.0 83 63.0 84 55.0 85 44.5 86 44.5 87 37.0 88 28.0 89 25.5 90 25.5 91 23.0 92 15.5 93 16.0 94 14.0 95 9.5 96 10.0 97 12.5 98 10.5 99 7.0 100 4.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.056548068278381956 2 0.07582281839972928 3 0.07107014028761624 4 0.07173023446985416 5 0.06737361286708388 6 0.010913557146333639 7 0.013729958990548772 8 0.01830661198739836 9 0.006556935543563356 10-11 0.01273981771719189 12-13 0.023565362305893806 14-15 0.04154192720217321 16-17 0.02829603727859891 18-19 0.011045575982781223 20-21 0.020594938485823156 22-23 0.03885754419440566 24-25 0.035293035610320884 26-27 0.021321042086284873 28-29 0.011529645049755698 30-31 0.011683667025611215 32-33 0.008735246344948497 34-35 0.0055447911307985424 36-37 8.141161580934368E-4 38-39 0.003806543117572015 40-41 0.001276182085659982 42-43 0.2229358084811541 44-45 0.19441973980847588 46-47 0.20060262198210438 48-49 0.2072695732227074 50-51 0.199458458732892 52-53 0.20592738171882363 54-55 0.20196681662539612 56-57 0.2052672875365857 58-59 0.21215427017126803 60-61 0.2162028478223273 62-63 0.20330900812927988 64-65 0.2027589296440816 66-67 0.20095467221263127 68-69 0.19662005374926897 70-71 0.1879948231013601 72-73 0.19970049326637923 74-75 0.19855633001716685 76-77 0.1929235263287366 78-79 0.2098439405334353 80-81 0.22053746628568965 82-83 0.2186451962966076 84-85 0.2129243800505456 86-87 0.2319790987778136 88-89 0.22432200626385373 90-91 0.23156103912906292 92-93 0.22634629508938336 94-95 0.23035086646162675 96-97 0.23684179258696628 98-99 0.23059290099511398 100-101 0.2364237329382156 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 2272403.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 59.465977853215094 #Duplication Level Percentage of deduplicated Percentage of total 1 78.33232832940314 46.5810850162706 2 11.878638377298758 14.127496933415976 3 3.906561540537188 6.969225061554186 4 1.8520338112325077 4.405320064086314 5 0.9870633654585848 2.9348344115040077 6 0.66401171206392 2.36916634583211 7 0.44694913357868254 1.8604787095232527 8 0.33042842376540027 1.5719399463764852 9 0.24222236427107907 1.2963590774367646 >10 1.296448521483424 13.29568928578187 >50 0.0454328604678636 1.8296190361175881 >100 0.016177353342687866 1.748094534337423 >500 8.891515287993619E-4 0.34011371038267824 >1k 8.150555680658032E-4 0.6705778673808124 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2281 0.10037832197897997 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 4.400627881586145E-5 2 0.0 0.0 0.0 0.0 4.400627881586145E-5 3 0.0 0.0 0.0 0.0 4.400627881586145E-5 4 0.0 0.0 0.0 0.0 4.400627881586145E-5 5 0.0 0.0 0.0 0.0 4.400627881586145E-5 6 0.0 0.0 0.0 0.0 4.400627881586145E-5 7 0.0 0.0 0.0 0.0 4.400627881586145E-5 8 0.0 0.0 0.0 0.0 1.3201883644758434E-4 9 0.0 0.0 0.0 0.0 2.2003139407930723E-4 10-11 0.0 0.0 0.0 0.0 2.2003139407930723E-4 12-13 0.0 0.0 0.0 0.0 2.2003139407930723E-4 14-15 0.0 0.0 0.0 0.0 3.5205023052689154E-4 16-17 0.0 0.0 0.0 4.400627881586145E-5 4.4006278815861445E-4 18-19 0.0 0.0 0.0 4.400627881586145E-5 5.280753457903374E-4 20-21 0.0 4.400627881586145E-5 0.0 8.80125576317229E-5 5.500784851982681E-4 22-23 0.0 4.400627881586145E-5 0.0 3.080439517110301E-4 6.38091042829991E-4 24-25 0.0 4.400627881586145E-5 0.0 0.0010561506915806747 7.041004610537832E-4 26-27 0.0 4.400627881586145E-5 0.0 0.002024288825529627 7.481067398696446E-4 28-29 0.0 4.400627881586145E-5 0.0 0.009769393897121241 7.481067398696446E-4 30-31 0.0 4.400627881586145E-5 0.0 0.04055178592881632 7.701098792775754E-4 32-33 0.0 4.400627881586145E-5 0.0 0.11582452584334733 8.801255763172289E-4 34-35 0.0 4.400627881586145E-5 0.0 0.22757847089622746 0.0011001569703965363 36-37 0.0 4.400627881586145E-5 0.0 0.40708008218612635 0.0011001569703965363 38-39 0.0 4.400627881586145E-5 0.0 0.6630646060579923 0.0011441632492123976 40-41 0.0 4.400627881586145E-5 0.0 0.9347153651883051 0.00121017266743619 42-43 0.0 4.400627881586145E-5 0.0 1.2169276312344244 0.0012321758068441204 44-45 0.0 4.400627881586145E-5 0.0 1.5786152368219897 0.0012321758068441204 46-47 0.0 4.400627881586145E-5 0.0 1.9956187348810928 0.0013201883644758435 48-49 0.0 4.400627881586145E-5 0.0 2.4130622957283547 0.0014082009221075664 50-51 0.0 4.400627881586145E-5 0.0 2.8353685503847688 0.0014082009221075664 52-53 0.0 4.400627881586145E-5 0.0 3.2598751189819763 0.0014302040615154971 54-55 0.0 4.400627881586145E-5 0.0 3.752239369513242 0.0014522072009234277 56-57 0.0 4.400627881586145E-5 0.0 4.31369347778541 0.0014742103403313585 58-59 0.0 6.600941822379217E-5 0.0 4.88438890460891 0.0015182166191472198 60-61 0.0 8.80125576317229E-5 0.0 5.461971314067091 0.0015402197585551506 62-63 0.0 8.80125576317229E-5 0.0 6.052909629145887 0.0016282323161868736 64-65 0.0 8.80125576317229E-5 0.0 6.692100828946273 0.0016502354555948044 66-67 0.0 8.80125576317229E-5 0.0 7.419172567541937 0.001672238595002735 68-69 0.0 8.80125576317229E-5 0.0 8.201230151518018 0.001672238595002735 70-71 0.0 8.80125576317229E-5 0.0 8.985003980367917 0.0017162448738185965 72-73 0.0 8.80125576317229E-5 0.0 9.777293024168689 0.0017162448738185965 74-75 0.0 8.80125576317229E-5 0.0 10.590419040988767 0.0017162448738185965 76-77 0.0 8.80125576317229E-5 0.0 11.5085660422029 0.0017162448738185965 78-79 0.0 8.80125576317229E-5 0.0 12.51182118664691 0.0017162448738185965 80-81 0.0 8.80125576317229E-5 0.0 13.519586974669545 0.0017822542920423886 82-83 0.0 8.80125576317229E-5 0.0 14.539080435996608 0.0018922699890820422 84-85 0.0 8.80125576317229E-5 0.0 15.58260132555713 0.0018922699890820422 86-87 0.0 8.80125576317229E-5 0.0 16.696224217271322 0.0018922699890820422 88-89 0.0 8.80125576317229E-5 0.0 17.86991567956916 0.0018922699890820422 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 1755 0.0 55.177456 1 GTATCAA 3340 0.0 42.778805 1 TCAACGC 4050 0.0 34.2252 4 CAACGCA 4175 0.0 33.426422 5 ATCAACG 4310 0.0 32.159863 3 TATCAAC 4490 0.0 31.188457 2 GTACATG 6090 0.0 31.17822 1 AACGCAG 4500 0.0 30.890484 6 TACATGG 6480 0.0 28.643095 2 ACATGGG 6750 0.0 26.512226 3 ACGCAGA 5470 0.0 24.548023 7 CATGGGG 5450 0.0 23.691393 4 GAGTACA 4715 0.0 23.658913 1 CGCAGAG 5725 0.0 23.372766 8 ATGGGGG 3570 0.0 21.938898 5 AGTACAT 5120 0.0 20.026358 2 ACCGTGC 525 0.0 19.883823 8 GCAGAGT 6370 0.0 19.814735 9 TCTATAC 530 0.0 18.808409 3 GTATATG 640 0.0 18.542515 1 >>END_MODULE