##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921661_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2272403 Sequences flagged as poor quality 0 Sequence length 101 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.244191281212004 33.0 31.0 34.0 28.0 34.0 2 31.373932792730866 33.0 31.0 34.0 28.0 34.0 3 31.445101067020243 34.0 31.0 34.0 28.0 34.0 4 34.9323632295856 37.0 35.0 37.0 32.0 37.0 5 34.66024644396263 37.0 35.0 37.0 32.0 37.0 6 34.62996748376058 37.0 35.0 37.0 32.0 37.0 7 34.505425314083816 37.0 35.0 37.0 31.0 37.0 8 34.45091825701691 37.0 35.0 37.0 31.0 37.0 9 36.018829406579734 39.0 37.0 39.0 31.0 39.0 10-11 35.90677313839139 39.0 37.0 39.0 30.5 39.0 12-13 35.823914156071794 39.0 37.0 39.0 30.0 39.0 14-15 37.03328678935911 40.0 37.0 41.0 31.0 41.0 16-17 36.99142845701225 40.0 37.0 41.0 31.0 41.0 18-19 36.953756882031925 40.0 37.0 41.0 30.5 41.0 20-21 36.88819060703581 40.0 37.0 41.0 30.0 41.0 22-23 36.79485416979294 40.0 37.0 41.0 30.0 41.0 24-25 36.7007812874741 40.0 37.0 41.0 30.0 41.0 26-27 36.56721497023196 40.0 37.0 41.0 30.0 41.0 28-29 36.437262008543385 40.0 37.0 41.0 30.0 41.0 30-31 36.26223649590324 40.0 36.0 41.0 29.0 41.0 32-33 36.191415871216506 40.0 36.0 41.0 29.0 41.0 34-35 36.308929578072195 40.0 36.5 41.0 29.5 41.0 36-37 36.292887749224064 40.0 36.0 41.0 29.0 41.0 38-39 36.17544093191216 40.0 36.0 41.0 28.5 41.0 40-41 36.08148356607521 40.0 36.0 41.0 28.0 41.0 42-43 35.94177221205922 40.0 36.0 41.0 27.5 41.0 44-45 35.795926162744905 40.0 35.5 41.0 27.0 41.0 46-47 35.63301161809767 40.0 35.0 41.0 26.5 41.0 48-49 35.479273702771906 40.0 35.0 41.0 26.0 41.0 50-51 35.30825210140983 39.0 35.0 41.0 26.0 41.0 52-53 35.121442147365585 39.0 35.0 41.0 25.5 41.0 54-55 34.904358513872765 39.0 35.0 41.0 24.0 41.0 56-57 34.67576789856377 39.0 35.0 41.0 24.0 41.0 58-59 34.42860685362588 38.0 34.0 40.0 23.0 41.0 60-61 34.14383562246661 38.0 34.0 40.0 23.0 41.0 62-63 33.829737726978884 37.0 34.0 40.0 22.0 41.0 64-65 33.48816583150084 37.0 34.0 40.0 21.5 41.0 66-67 33.131280191057655 36.0 33.0 39.0 20.0 41.0 68-69 32.76489535526929 36.0 33.0 39.0 19.5 40.5 70-71 32.368061254979864 35.0 33.0 38.5 18.0 40.0 72-73 31.99717523696281 35.0 33.0 37.5 15.5 39.5 74-75 31.586176175616735 35.0 32.0 37.0 11.5 39.0 76-77 28.880058026679244 32.0 28.0 34.5 7.0 36.5 78-79 30.44524606770894 34.5 31.0 35.5 7.0 37.0 80-81 30.62499345406603 35.0 31.5 35.5 4.5 37.0 82-83 30.443653480478595 35.0 32.0 35.0 2.0 37.0 84-85 30.23936049195499 35.0 31.0 35.0 2.0 36.0 86-87 30.02517313170243 35.0 31.0 35.0 2.0 36.0 88-89 29.748461210445505 34.5 31.0 35.0 2.0 36.0 90-91 29.53897416083327 34.0 31.0 35.0 2.0 35.0 92-93 29.365092371379546 34.0 31.0 35.0 2.0 35.0 94-95 29.246982159414507 34.0 31.0 35.0 2.0 35.0 96-97 29.03204801261044 34.0 31.0 35.0 2.0 35.0 98-99 28.80998924926609 34.0 30.5 35.0 2.0 35.0 100-101 27.633706477240175 33.0 27.5 34.5 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 47339.0 3 15985.0 4 8661.0 5 6185.0 6 5438.0 7 5526.0 8 5888.0 9 6111.0 10 6742.0 11 7329.0 12 7931.0 13 8412.0 14 9270.0 15 10006.0 16 10950.0 17 11639.0 18 10980.0 19 9898.0 20 9732.0 21 9578.0 22 9916.0 23 11220.0 24 12999.0 25 15415.0 26 18262.0 27 21532.0 28 26060.0 29 31166.0 30 38149.0 31 46564.0 32 59033.0 33 77266.0 34 110320.0 35 163507.0 36 278567.0 37 527336.0 38 544961.0 39 66529.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.76257234522606 19.378713677528605 12.272738692415272 26.58597528483006 2 15.879392606400817 21.360034641818906 36.308164326847674 26.452408424932607 3 18.043392057009893 24.552288630193114 29.47023700282594 27.934082309971053 4 13.331572971402919 16.141902775210585 34.89129765079701 35.63522660258949 5 13.875436760126805 37.638576978504666 34.428670655793844 14.057315605574683 6 34.183977253574156 35.221402270857965 16.40666497385754 14.18795550171034 7 28.674359257578867 32.11322991564437 21.08499240671659 18.127418420060174 8 26.985442282904927 34.56605188428285 20.027697551886703 18.42080828092552 9 27.027072222664728 14.56317387364829 19.229819710676317 39.17993419301066 10-11 25.765044428183607 25.094923361273207 28.141188373561288 20.998843836981894 12-13 25.975121848287415 22.6881060097153 27.82796832681635 23.50880381518094 14-15 23.18538196827473 24.507132563874453 24.831805102298805 27.475680365552012 16-17 23.423684091246137 27.58394967794005 25.855185017798338 23.137181213015474 18-19 23.45814238868808 26.942288528094853 27.125115710969784 22.47445337224728 20-21 23.712659490106926 26.204058443987364 27.10830145071418 22.97498061519153 22-23 23.841479702323927 25.963462466824765 26.701601784542618 23.493456046308687 24-25 23.51652694260308 26.018006108531722 26.826866185925823 23.638600762939372 26-27 23.230800746985096 26.29793280874801 26.960313281341282 23.510953162925617 28-29 23.364521558426926 26.737787643548096 26.610954599095137 23.28673619892984 30-31 23.842218830703686 26.342408640816544 26.378302008246013 23.437070520233757 32-33 23.49429313149047 26.40374309486185 26.32115540898729 23.78080836466039 34-35 23.827518991765135 26.41255998123379 26.453710089346348 23.306210937654726 36-37 23.79677926513027 26.23986850371264 26.680147823302963 23.28320440785413 38-39 23.630782838867674 26.310435761270284 26.60849035327148 23.450291046590557 40-41 23.709172251631703 26.129758955710926 26.636663569979767 23.524405222677604 42-43 23.528741254878817 26.141038480183592 26.35723906679685 23.97298119814074 44-45 23.277545432100613 26.17818915896537 26.644205688051027 23.90005972088299 46-47 23.343099406004207 26.05646865706782 26.607820852893898 23.992611084034067 48-49 23.190957118135934 26.274317884548694 26.561308971585195 23.973416025730174 50-51 23.343713989417495 26.200202390888137 26.65244634870159 23.803637270992773 52-53 23.552602279398368 25.94960996394048 26.619620006389848 23.878167750271302 54-55 22.76244316909085 25.938944977162016 26.9672813272479 24.331330526499233 56-57 22.93394008276056 26.004750865619158 26.680962539897703 24.38034651172258 58-59 22.974413212024462 25.917524316680325 26.753068757464344 24.35499371383087 60-61 22.962994095673327 25.993164430392675 26.818234229603316 24.225607244330686 62-63 22.951054543837962 25.960443354513046 26.770820013939833 24.317682087709155 64-65 22.648544655298036 25.73531062688893 26.727383989557353 24.888760728255676 66-67 22.72829450989691 25.927454874786793 26.418452949852412 24.925797665463886 68-69 22.728811738464643 25.851871713790832 26.442585836598077 24.976730711146452 70-71 22.54617578659461 25.67694321863387 26.42957452177241 25.347306472999115 72-73 22.53606131667442 25.91191648944342 26.31277631748662 25.23924587639554 74-75 22.415015372317328 25.91559872584409 26.297634210377463 25.37175169146112 76-77 22.316419377082966 25.621711880639435 26.432129864465036 25.629738877812564 78-79 22.335448153147897 25.591250327573185 26.510194958345906 25.56310656093302 80-81 22.399780876112434 25.753155795718936 26.239469029705248 25.607594298463383 82-83 22.313282170437194 25.704590288557768 26.323668814997685 25.65845872600735 84-85 22.14974728189621 25.716243767354484 26.289375272569888 25.84463367817942 86-87 22.063957975216773 25.87636218236295 26.207339496809674 25.852340345610596 88-89 21.881741548239035 25.504766528378497 26.32880218907229 26.28468973431018 90-91 21.898585176305676 25.296660140423104 26.410123210064423 26.394631473206797 92-93 21.986711637784808 25.11853130157573 26.461985117791613 26.43277194284785 94-95 21.747494407872658 25.012724634077372 26.602506197276387 26.63727476077358 96-97 21.624590127858102 24.77289232191193 26.6892674016857 26.913250148544265 98-99 21.410299232127684 24.81714130056421 26.61674990527565 27.155809562032456 100-101 21.350032586735505 24.80684493070533 26.590820177988267 27.252302304570904 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 171.0 1 145.5 2 170.0 3 236.5 4 240.5 5 257.5 6 366.0 7 623.5 8 877.0 9 934.0 10 788.0 11 628.5 12 592.5 13 605.0 14 664.0 15 720.0 16 738.5 17 798.5 18 873.0 19 936.5 20 1048.5 21 1168.0 22 1319.5 23 1546.5 24 1794.0 25 2134.5 26 2800.0 27 3869.0 28 5452.5 29 7690.0 30 10777.0 31 14921.5 32 21212.0 33 25957.5 34 28807.0 35 33575.0 36 39821.5 37 45963.5 38 51660.0 39 57684.5 40 63059.5 41 67664.5 42 72340.0 43 77814.5 44 82997.0 45 88610.5 46 93161.5 47 96474.0 48 100006.0 49 102108.5 50 102952.0 51 102546.0 52 101082.5 53 99315.0 54 96127.5 55 89328.5 56 80418.0 57 71029.5 58 62520.5 59 53889.0 60 44490.0 61 36646.5 62 30203.0 63 23232.5 64 16445.5 65 11893.5 66 8895.0 67 6824.5 68 5257.0 69 3999.5 70 3013.0 71 2190.5 72 1542.5 73 1164.5 74 921.0 75 650.5 76 432.5 77 264.0 78 142.5 79 82.0 80 50.0 81 40.5 82 32.0 83 19.5 84 11.0 85 6.0 86 5.0 87 5.5 88 5.0 89 2.5 90 2.0 91 2.0 92 1.5 93 1.0 94 0.5 95 0.0 96 0.5 97 0.5 98 0.0 99 0.5 100 0.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.15815856606420603 2 2.2003139407930723E-4 3 0.010385481800543302 4 0.006292897870668186 5 0.02468752241569827 6 0.0020242888255296264 7 0.0 8 0.0 9 0.0 10-11 0.04827488786100001 12-13 3.300470911189608E-4 14-15 0.004994712645600274 16-17 0.0 18-19 0.0016942417344106655 20-21 2.2003139407930723E-4 22-23 0.0 24-25 3.300470911189608E-4 26-27 0.0030144300988865095 28-29 0.00547878171257475 30-31 0.0174044832716732 32-33 0.011991710977322243 34-35 0.010297469242911578 36-37 0.004202599626914768 38-39 2.2003139407930725E-5 40-41 0.0036085148629006383 42-43 0.00913130285429125 44-45 0.007305042283433 46-47 0.0035425054446768466 48-49 0.009109299714883319 50-51 0.0029704238200706475 52-53 0.002156307661977211 54-55 0.004048577651059253 56-57 0.008163164720342298 58-59 0.015468207003775297 60-61 0.007525073677512308 62-63 0.021849117432075207 64-65 0.04171795231743665 66-67 0.062334893942667745 68-69 0.05144333993574203 70-71 0.06908985774090247 72-73 0.03458893514926709 74-75 0.027481921120505473 76-77 0.2224297362747717 78-79 0.08440404276882225 80-81 0.06783567879465043 82-83 0.028142015302743392 84-85 0.05265351260317822 86-87 0.0683197478616249 88-89 0.29057345902113313 90-91 0.2939179362111386 92-93 0.051377330517518235 94-95 0.010363478661135371 96-97 0.01553421642199909 98-99 8.801255763172289E-4 100-101 2.640376728951687E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 2272403.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 59.20254473155293 #Duplication Level Percentage of deduplicated Percentage of total 1 78.05248586506795 46.209057858355884 2 11.959766182624236 14.160971848114507 3 4.041742725581831 7.178443635140609 4 1.8144381825144533 4.296774306517981 5 1.0749252205569564 3.181915422654881 6 0.6519009421674943 2.315651681352755 7 0.45315685386979976 1.8779627238145629 8 0.33143333594811053 1.569735751759666 9 0.25669692892455287 1.3677400275397293 >10 1.2990496047515985 13.291847057385041 >50 0.04690135732921941 1.8612204313475302 >100 0.01571767826723714 1.6919930603704132 >500 0.0010413213979422386 0.4066183763631414 >1k 7.438009985294367E-4 0.5900678192832903 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 8.80125576317229E-5 2 0.0 0.0 0.0 0.0 8.80125576317229E-5 3 0.0 0.0 0.0 0.0 8.80125576317229E-5 4 0.0 0.0 0.0 0.0 8.80125576317229E-5 5 0.0 0.0 0.0 0.0 8.80125576317229E-5 6 0.0 0.0 0.0 0.0 1.3201883644758434E-4 7 0.0 0.0 0.0 0.0 1.3201883644758434E-4 8 0.0 0.0 0.0 0.0 1.3201883644758434E-4 9 0.0 0.0 0.0 0.0 1.760251152634458E-4 10-11 0.0 0.0 0.0 0.0 1.760251152634458E-4 12-13 0.0 0.0 0.0 0.0 2.2003139407930723E-4 14-15 0.0 0.0 0.0 4.400627881586145E-5 3.080439517110301E-4 16-17 0.0 0.0 0.0 4.400627881586145E-5 3.96056509342753E-4 18-19 0.0 0.0 0.0 4.400627881586145E-5 4.4006278815861445E-4 20-21 0.0 0.0 0.0 8.80125576317229E-5 4.4006278815861445E-4 22-23 0.0 0.0 0.0 3.080439517110301E-4 5.500784851982681E-4 24-25 0.0 0.0 0.0 0.0010561506915806747 6.600941822379218E-4 26-27 0.0 0.0 0.0 0.002068295104345488 6.600941822379218E-4 28-29 0.0 0.0 0.0 0.009791397036529172 6.600941822379218E-4 30-31 0.0 0.0 0.0 0.04059579220763219 6.600941822379218E-4 32-33 0.0 0.0 0.0 0.11613256979505836 6.600941822379218E-4 34-35 0.0 0.0 0.0 0.22821656193905746 7.041004610537832E-4 36-37 0.0 0.0 0.0 0.40776217950777216 7.041004610537832E-4 38-39 0.0 0.0 0.0 0.6642087693072047 7.261036004617138E-4 40-41 0.0 0.0 0.0 0.9355074782069905 8.361192975013675E-4 42-43 0.0 0.0 0.0 1.2173676940225833 8.361192975013675E-4 44-45 0.0 0.0 0.0 1.5780431551973835 8.581224369092982E-4 46-47 0.0 0.0 0.0 1.9920542262970082 9.241318551330903E-4 48-49 0.0 0.0 0.0 2.4080235768039384 0.0011881695280282591 50-51 0.0 0.0 0.0 2.828965636817061 0.0011881695280282591 52-53 0.0 0.0 0.0 3.251821969958674 0.0012981852250679128 54-55 0.0 0.0 0.0 3.7406657181846708 0.0014082009221075664 56-57 0.0 0.0 0.0 4.300249559607165 0.0014302040615154971 58-59 0.0 0.0 0.0 4.867314468428356 0.0014522072009234277 60-61 4.400627881586145E-5 0.0 0.0 5.442608551388112 0.0014962134797392892 62-63 4.400627881586145E-5 0.0 0.0 6.0326667408905905 0.001584226037371012 64-65 4.400627881586145E-5 0.0 0.0 6.670911805696436 0.0016062291767789429 66-67 4.400627881586145E-5 0.0 0.0 7.396025264884794 0.0016282323161868736 68-69 4.400627881586145E-5 0.0 0.0 8.176586635381137 0.0016282323161868736 70-71 4.400627881586145E-5 0.0 0.0 8.960008414000509 0.0016282323161868736 72-73 4.400627881586145E-5 0.0 0.0 9.752231448383057 0.0018482637102661807 74-75 4.400627881586145E-5 0.0 0.0 10.567601785422744 0.0018922699890820422 76-77 4.400627881586145E-5 0.0 0.0 11.48933529836037 0.0018922699890820422 78-79 4.400627881586145E-5 0.0 0.0 12.498795328117417 0.0018922699890820422 80-81 4.400627881586145E-5 0.0 0.0 13.510939740882229 0.0019582794073058343 82-83 4.400627881586145E-5 0.0 0.0 14.533777679399297 0.002068295104345488 84-85 4.400627881586145E-5 0.0 0.0 15.578970807554821 0.002068295104345488 86-87 4.400627881586145E-5 0.0 0.0 16.697786440169285 0.0020902982437534185 88-89 4.400627881586145E-5 0.0 0.0 17.878232866265357 0.0021123013831613495 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 1950 0.0 52.890247 1 GTATCAA 3200 0.0 37.42838 1 GTACATG 5750 0.0 31.409876 1 TACATGG 6190 0.0 28.981464 2 TCAACGC 4065 0.0 28.370363 4 CAACGCA 4100 0.0 28.1511 5 TATCAAC 4290 0.0 27.54617 2 ACATGGG 6420 0.0 27.42572 3 ATCAACG 4270 0.0 27.23061 3 AACGCAG 4325 0.0 26.683067 6 CATGGGG 5205 0.0 25.347971 4 ATGGGGG 3485 0.0 23.987381 5 GAGTACA 4255 0.0 21.781385 1 ACGCAGA 5405 0.0 21.175657 7 CGCAGAG 5655 0.0 20.155529 8 AGTACAT 4770 0.0 18.207565 2 TAGACCG 190 1.8673671E-4 17.499168 5 AGAGTAC 5200 0.0 17.444365 10-11 CCTACAC 710 0.0 17.379374 3 GCAGAGT 6155 0.0 17.206873 9 >>END_MODULE