##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921658_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2977964 Sequences flagged as poor quality 0 Sequence length 101 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.15179263416213 33.0 31.0 34.0 28.0 34.0 2 31.28666800538892 33.0 31.0 34.0 28.0 34.0 3 31.36428949443311 34.0 31.0 34.0 28.0 34.0 4 34.840605192003665 37.0 35.0 37.0 32.0 37.0 5 34.55755408728917 37.0 35.0 37.0 32.0 37.0 6 34.529136013732874 37.0 35.0 37.0 31.0 37.0 7 34.39929730513868 37.0 35.0 37.0 31.0 37.0 8 34.339599471316646 37.0 35.0 37.0 30.0 37.0 9 35.913426085741804 39.0 37.0 39.0 30.0 39.0 10-11 35.79265095212702 39.0 37.0 39.0 30.0 39.0 12-13 35.709670936250404 39.0 37.0 39.0 30.0 39.0 14-15 36.92954448072575 40.0 37.0 41.0 31.0 41.0 16-17 36.88833377435053 40.0 37.0 41.0 30.0 41.0 18-19 36.84356593968228 40.0 37.0 41.0 30.0 41.0 20-21 36.78298831013404 40.0 37.0 41.0 30.0 41.0 22-23 36.692009372846684 40.0 37.0 41.0 30.0 41.0 24-25 36.603296581154105 40.0 37.0 41.0 30.0 41.0 26-27 36.474607483502155 40.0 37.0 41.0 29.5 41.0 28-29 36.34993388100058 40.0 37.0 41.0 29.0 41.0 30-31 36.19029477858027 40.0 36.0 41.0 28.5 41.0 32-33 36.13744659102662 40.0 36.0 41.0 28.5 41.0 34-35 36.266035620309715 40.0 37.0 41.0 29.0 41.0 36-37 36.26142122604571 40.0 37.0 41.0 29.0 41.0 38-39 36.15631837725372 40.0 36.5 41.0 28.0 41.0 40-41 36.07381721202809 40.0 36.0 41.0 28.0 41.0 42-43 35.94997471426787 40.0 36.0 41.0 27.5 41.0 44-45 35.82025118503783 40.0 36.0 41.0 27.0 41.0 46-47 35.668104114086 40.0 35.5 41.0 26.5 41.0 48-49 35.524978475226696 40.0 35.0 41.0 26.0 41.0 50-51 35.36966766555942 39.5 35.0 41.0 26.0 41.0 52-53 35.1951494376695 39.0 35.0 41.0 25.5 41.0 54-55 34.985710874946776 39.0 35.0 41.0 24.0 41.0 56-57 34.760989891079944 39.0 35.0 41.0 24.0 41.0 58-59 34.523172375488755 38.5 34.5 40.0 23.5 41.0 60-61 34.249835961751046 38.0 34.0 40.0 23.0 41.0 62-63 33.948159380032806 37.5 34.0 40.0 22.5 41.0 64-65 33.61770474727028 37.0 34.0 40.0 22.0 41.0 66-67 33.269664106080526 36.5 33.5 39.0 21.0 41.0 68-69 32.90691139986917 36.0 33.0 39.0 20.0 41.0 70-71 32.508841443348544 35.0 33.0 39.0 18.5 40.0 72-73 32.147024443545995 35.0 33.0 37.5 18.0 40.0 74-75 31.741138408657726 35.0 32.5 37.0 14.5 39.0 76-77 29.034769560679713 33.0 28.5 34.5 7.5 36.5 78-79 30.593742906227206 34.5 31.0 36.0 8.0 37.5 80-81 30.769864746518092 35.0 32.0 36.0 7.0 37.0 82-83 30.587876314152894 35.0 32.0 35.0 6.0 37.0 84-85 30.378943969772635 35.0 32.0 35.0 2.0 36.5 86-87 30.16129543540486 35.0 31.0 35.0 2.0 36.0 88-89 29.88299623501157 34.5 31.0 35.0 2.0 36.0 90-91 29.675534190473762 34.0 31.0 35.0 2.0 35.0 92-93 29.512175936310847 34.0 31.0 35.0 2.0 35.0 94-95 29.394856183620757 34.0 31.0 35.0 2.0 35.0 96-97 29.180036427572663 34.0 31.0 35.0 2.0 35.0 98-99 28.960782266004557 34.0 31.0 35.0 2.0 35.0 100-101 27.832805903630803 33.0 28.0 34.5 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 69084.0 3 22787.0 4 11897.0 5 8335.0 6 7334.0 7 7036.0 8 7353.0 9 7822.0 10 8643.0 11 9391.0 12 10056.0 13 10609.0 14 11195.0 15 12051.0 16 12799.0 17 13463.0 18 12797.0 19 11711.0 20 11322.0 21 11479.0 22 12085.0 23 13580.0 24 15977.0 25 19058.0 26 22651.0 27 27351.0 28 32749.0 29 39604.0 30 47946.0 31 59629.0 32 75916.0 33 98840.0 34 139623.0 35 209295.0 36 364127.0 37 698013.0 38 734726.0 39 89627.0 40 3.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.34672493430093 19.33368668792624 12.400392008356746 26.91919636941608 2 15.455613910193556 20.91938776880818 36.6513317841744 26.973666536823863 3 17.8656934610537 24.01033566391763 29.229080238080286 28.894890636948382 4 12.816940193500507 16.30495303532509 35.20335687443959 35.6747498967348 5 13.76321939612811 37.25372440510618 34.9652733693531 14.017782829412607 6 34.470197118774976 35.70170254205984 16.217065717451895 13.611034621713289 7 29.056899277492942 31.61149698250214 20.85901642867409 18.47258731133083 8 26.757576653042147 35.148578021762525 19.541068998819327 18.55277632637601 9 26.386954308379817 14.796082155459233 18.92088017182209 39.89608336433886 10-11 25.64146711666343 25.139504148001723 28.19312480556767 21.02590392976718 12-13 26.042607434062543 22.46857700478634 27.733365301585366 23.75545025956575 14-15 22.993487017270848 24.29759473494298 24.73469279471587 27.974225453070307 16-17 23.543451163277997 27.320729867788867 25.647069608631938 23.4887493603012 18-19 23.541867170284743 26.74788224524651 26.764168791753164 22.94608179271558 20-21 23.920140552734644 26.020422726050107 26.76079607596752 23.29864064524773 22-23 23.734105538902675 25.969609768554918 26.404000586306715 23.892284106235685 24-25 23.588909939938468 26.111101410166604 26.51251903157411 23.787469618320817 26-27 23.46222732128978 26.288560695647732 26.468268686533218 23.780943296529266 28-29 23.58490074983121 26.46667249870584 26.356221960246874 23.592204791216076 30-31 23.828419660423567 26.23614849365603 26.18971651809554 23.74571532782486 32-33 23.585099718013186 26.264604147975152 26.12481136370086 24.0254847703108 34-35 23.922984529974276 26.213674724276082 26.305558909231287 23.557781836518355 36-37 23.94578988417008 26.018504915026995 26.316286121817445 23.719419078985478 38-39 23.678744941174575 26.255035319433006 26.325821937404214 23.740397801988202 40-41 23.920724092156327 26.021331476066816 26.375915802425435 23.682028629351414 42-43 23.72185704465092 26.067073938635165 26.182078846787405 24.02899016992651 44-45 23.68376644583568 26.10141658138186 26.316191576407494 23.89862539637497 46-47 23.77909039453445 26.125060299346693 26.137015227253606 23.958834078865248 48-49 23.569484462130124 26.22219035546675 26.223399351810045 23.98492583059308 50-51 23.634827157413504 26.259309046057215 26.280784033489564 23.825079763039717 52-53 23.834058479712834 26.07434187362288 26.17355593505433 23.91804371160996 54-55 23.319154180572134 26.040785856622538 26.439832684430293 24.20022727837504 56-57 23.40729775420134 26.125787426563384 26.296974414807483 24.169940404427788 58-59 23.463627767419624 26.007216394956146 26.36239387370486 24.16676196391937 60-61 23.373354102961454 26.069420640548362 26.492257313460804 24.064967943029384 62-63 23.4375983997751 26.051734581789095 26.38763940125579 24.123027617180014 64-65 23.209215787022238 25.942236218790114 26.33024177449218 24.518306219695464 66-67 23.213982714135426 26.035678513696542 26.203560996966253 24.546777775201775 68-69 23.36264930610092 25.92147933253317 26.26142814786942 24.45444321349649 70-71 23.233582311856058 25.730894523262158 26.22868355567339 24.806839609208392 72-73 23.245788988294038 25.90784338457699 26.153880778431475 24.692486848697502 74-75 23.21362892978459 25.966044229295836 26.055038229296507 24.765288611623063 76-77 23.275900655692354 25.702699400914664 26.161041246054424 24.86035869733856 78-79 23.16314848549976 25.717609983735613 26.244358338098607 24.87488319266602 80-81 23.265558961317904 25.814330769938998 26.02879635161536 24.891313917127743 82-83 23.229187904812353 25.813420279992517 26.088700237240236 24.868691577954895 84-85 23.15665835863065 25.747122690883106 26.082809454463234 25.01340949602301 86-87 23.1117703966029 25.788059539998837 26.038651872058296 25.06151819133997 88-89 23.00595175450044 25.62324190021697 26.05236769365093 25.31843865163166 90-91 22.93684133595449 25.649179081178495 26.08869540441059 25.325284178456425 92-93 23.068612968003148 25.4364344895545 26.171488239845537 25.323464302596822 94-95 22.90406678696057 25.28453941237335 26.263295885055175 25.548097915610906 96-97 22.881530686919636 25.1289403765996 26.274248632847463 25.715280303633303 98-99 22.689186670673905 25.1628052230649 26.218785101806784 25.929223004454414 100-101 22.694167381082146 25.129241201776114 26.177072955000387 25.999518462141353 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 37.0 1 29.0 2 46.0 3 74.5 4 72.5 5 79.5 6 136.5 7 263.5 8 372.5 9 382.0 10 338.0 11 303.0 12 295.5 13 326.5 14 375.0 15 427.0 16 469.0 17 511.5 18 594.5 19 680.0 20 778.5 21 937.5 22 1140.0 23 1432.5 24 1802.5 25 2322.0 26 3142.0 27 4403.0 28 6310.0 29 9147.5 30 13169.5 31 18591.0 32 26482.0 33 32671.0 34 37593.0 35 44391.5 36 52879.5 37 61690.0 38 69149.5 39 76626.5 40 84134.5 41 91289.0 42 97344.5 43 103465.0 44 109866.0 45 116730.5 46 122108.0 47 125868.5 48 129005.5 49 130531.5 50 130720.5 51 130170.5 52 128881.5 53 127186.0 54 123869.5 55 116950.0 56 107863.0 57 96846.5 58 86247.5 59 75075.0 60 61935.0 61 50770.5 62 41449.0 63 31569.0 64 22367.5 65 16091.0 66 12084.5 67 9362.0 68 7305.0 69 5528.5 70 4170.5 71 3041.0 72 2174.0 73 1648.5 74 1261.5 75 931.5 76 636.5 77 390.0 78 232.0 79 144.5 80 91.0 81 57.5 82 34.5 83 20.5 84 16.0 85 11.5 86 8.0 87 6.0 88 5.0 89 3.0 90 3.5 91 2.5 92 2.5 93 2.5 94 0.5 95 0.0 96 0.5 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.15305759236847724 2 1.34319958199629E-4 3 0.01051053672912097 4 0.006514517972682007 5 0.02384179258043415 6 0.002149119331194064 7 0.0 8 0.0 9 0.0 10-11 0.04533298589237479 12-13 3.1900990072411886E-4 14-15 0.004785148510861783 16-17 0.0 18-19 0.0015446795192957336 20-21 2.3505992684935074E-4 22-23 1.6789994774953625E-5 24-25 6.044398118983306E-4 26-27 0.002602449190117812 28-29 0.0053895883227601145 30-31 0.016454194879454553 32-33 0.011501146420843234 34-35 0.010157946838846943 36-37 0.0035762688870651224 38-39 0.0 40-41 0.0037273788400397053 42-43 0.008898697230725422 44-45 0.006598467946556775 46-47 0.0037777488243645654 48-49 0.009654246995598335 50-51 0.0027199791535424873 52-53 0.0019980093782194816 54-55 0.003962438766889056 56-57 0.0075890776382790395 58-59 0.01472482541763433 60-61 0.0073372277166547355 62-63 0.021239343390316336 64-65 0.040379937433763474 66-67 0.05960448145108537 68-69 0.049916654465937134 70-71 0.06731108905278908 72-73 0.03282443978503434 74-75 0.02676325167127608 76-77 0.22166151101893775 78-79 0.08208628445474828 80-81 0.06588393949691804 82-83 0.027300531504074597 84-85 0.05132701402703324 86-87 0.0676636789430631 88-89 0.29118887938202076 90-91 0.29520168813323466 92-93 0.050873684168109494 94-95 0.008630057314326164 96-97 0.014271495558710582 98-99 6.380198014482377E-4 100-101 1.6789994774953627E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 2977964.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 65.18043252417267 #Duplication Level Percentage of deduplicated Percentage of total 1 81.02857735485348 52.81477718807732 2 11.06307453793091 14.42191966858997 3 3.4143047814351264 6.676375872698771 4 1.47802035408405 3.853520238349169 5 0.7823389812869841 2.5496596590403127 6 0.5176415536914555 2.024406021725629 7 0.3353195903048643 1.52993931509296 8 0.24491093286262774 1.2770720427107751 9 0.18391779728203836 1.0789057418162729 >10 0.9032698425168973 10.193422379878669 >50 0.037337755103711075 1.624332434715012 >100 0.009943852410572421 1.126021871021764 >500 8.262561463539914E-4 0.4002154157078657 >1k 5.164100909971943E-4 0.4294321505755457 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10-11 0.0 0.0 0.0 0.0 0.0 12-13 0.0 0.0 0.0 0.0 3.357998954990725E-5 14-15 0.0 0.0 0.0 3.357998954990725E-5 1.34319958199629E-4 16-17 0.0 0.0 0.0 3.357998954990725E-5 2.3505992684935077E-4 18-19 0.0 0.0 0.0 3.357998954990725E-5 2.3505992684935077E-4 20-21 0.0 0.0 0.0 3.357998954990725E-5 2.68639916399258E-4 22-23 0.0 0.0 0.0 5.0369984324860876E-5 3.0221990594916524E-4 24-25 0.0 0.0 0.0 2.014799372994435E-4 3.3579989549907253E-4 26-27 0.0 0.0 0.0 5.876498171233769E-4 3.6937988504897977E-4 28-29 0.0 0.0 0.0 0.0057085982234842325 3.6937988504897977E-4 30-31 0.0 0.0 0.0 0.02325414276331077 3.6937988504897977E-4 32-33 0.0 0.0 0.0 0.06187113074570411 3.6937988504897977E-4 34-35 0.0 0.0 0.0 0.1108979154885687 4.02959874598887E-4 36-37 0.0 1.6789994774953625E-5 0.0 0.1878632515369561 4.02959874598887E-4 38-39 0.0 3.357998954990725E-5 0.0 0.3100272535195187 4.365398641487943E-4 40-41 0.0 3.357998954990725E-5 0.0 0.4462444811287175 4.7011985369870154E-4 42-43 0.0 3.357998954990725E-5 0.0 0.5918808958066653 4.7011985369870154E-4 44-45 0.0 3.357998954990725E-5 0.0 0.7644316721088636 4.7011985369870154E-4 46-47 0.0 3.357998954990725E-5 0.0 0.9668686391104795 4.8690984847365516E-4 48-49 0.0 3.357998954990725E-5 0.0 1.1728818749991605 5.036998432486088E-4 50-51 0.0 3.357998954990725E-5 0.0 1.3914708169742818 5.036998432486088E-4 52-53 0.0 3.357998954990725E-5 0.0 1.6143076276274662 6.044398118983305E-4 54-55 0.0 3.357998954990725E-5 0.0 1.8711777576894817 6.715997909981451E-4 56-57 0.0 3.357998954990725E-5 0.0 2.171617924192502 6.715997909981451E-4 58-59 0.0 3.357998954990725E-5 0.0 2.482132087560494 6.715997909981451E-4 60-61 0.0 3.357998954990725E-5 0.0 2.8091676057870414 7.219697753230059E-4 62-63 0.0 5.0369984324860876E-5 0.0 3.1436075117093427 7.387597700979595E-4 64-65 0.0 1.0073996864972175E-4 0.0 3.5082861982213354 7.387597700979595E-4 66-67 0.0 1.0073996864972175E-4 0.0 3.9318809763986406 7.555497648729132E-4 68-69 0.0 1.0073996864972175E-4 0.0 4.380711116722701 7.723397596478668E-4 70-71 0.0 1.0073996864972175E-4 0.0 4.8467174217015385 7.723397596478668E-4 72-73 0.0 1.0073996864972175E-4 0.0 5.327985831930809 8.562897335226349E-4 74-75 0.0 1.0073996864972175E-4 0.0 5.828344466219202 9.234497126224495E-4 76-77 0.0 1.0073996864972175E-4 0.0 6.387518452204258 9.402397073974031E-4 78-79 0.0 1.0073996864972175E-4 0.0 7.004769030115877 9.402397073974031E-4 80-81 0.0 1.1752996342467538E-4 0.0 7.639968112441924 9.402397073974031E-4 82-83 0.0 1.34319958199629E-4 0.0 8.29638974816351 9.402397073974031E-4 84-85 0.0 1.34319958199629E-4 0.0 8.973714927379916 9.738196969473103E-4 86-87 0.0 1.34319958199629E-4 0.0 9.701057501030906 9.90609691722264E-4 88-89 0.0 1.34319958199629E-4 0.0 10.475848599915917 0.0010409796760471248 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 3085 0.0 40.683865 1 GGTATCA 1885 0.0 39.84916 1 TCAACGC 3670 0.0 32.852016 4 CAACGCA 3810 0.0 31.665602 5 ATCAACG 4100 0.0 29.985933 3 AACGCAG 4150 0.0 29.063496 6 TATCAAC 4265 0.0 28.38068 2 GTACATG 5805 0.0 25.060667 1 ACGCAGA 5060 0.0 23.365078 7 TACATGG 6065 0.0 23.088348 2 CGCAGAG 5420 0.0 21.725552 8 ACATGGG 6590 0.0 21.104927 3 CATGGGG 5365 0.0 19.110779 4 AGAGTAC 5215 0.0 18.02724 10-11 GCAGAGT 6565 0.0 17.213161 9 GAGTACA 4695 0.0 17.112936 1 GTATAGA 800 0.0 16.639545 1 TAAGGTG 1430 0.0 16.275677 5 GTAAGGT 1150 0.0 16.0976 4 GTATATA 860 0.0 16.031456 1 >>END_MODULE