##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921656_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3037888 Sequences flagged as poor quality 0 Sequence length 101 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.40999832778562 31.0 31.0 34.0 26.0 34.0 2 30.44997346840963 33.0 31.0 34.0 26.0 34.0 3 30.515366596793562 33.0 31.0 34.0 26.0 34.0 4 33.96152590220574 37.0 35.0 37.0 30.0 37.0 5 33.95941160437778 37.0 35.0 37.0 30.0 37.0 6 34.010780845113445 37.0 35.0 37.0 30.0 37.0 7 33.917578594075884 37.0 35.0 37.0 30.0 37.0 8 33.88803471359049 37.0 35.0 37.0 30.0 37.0 9 35.45798660121769 39.0 37.0 39.0 30.0 39.0 10-11 35.35910244222302 39.0 37.0 39.0 30.0 39.0 12-13 35.250532442275684 39.0 37.0 39.0 29.0 39.0 14-15 36.419736672319715 40.0 37.0 41.0 29.0 41.0 16-17 36.35448377293699 40.0 37.0 41.0 28.0 41.0 18-19 36.31387101828639 40.0 37.0 41.0 28.0 41.0 20-21 36.239339304148146 40.0 37.0 41.0 27.0 41.0 22-23 36.14126360155476 40.0 37.0 41.0 27.0 41.0 24-25 36.03797243348011 40.0 36.5 41.0 27.0 41.0 26-27 35.896417346524956 40.0 36.0 41.0 27.0 41.0 28-29 35.766812502633414 40.0 36.0 41.0 27.0 41.0 30-31 35.626817710198665 40.0 36.0 41.0 26.0 41.0 32-33 35.46594509079993 40.0 36.0 41.0 25.0 41.0 34-35 35.29987906071587 39.5 35.0 41.0 25.0 41.0 36-37 35.27347749489119 39.5 35.0 41.0 24.5 41.0 38-39 35.45479721438052 40.0 35.5 41.0 25.0 41.0 40-41 35.52106545731772 40.0 36.0 41.0 25.0 41.0 42-43 35.36400848220869 40.0 35.0 41.0 24.0 41.0 44-45 35.25157444909095 40.0 35.0 41.0 24.0 41.0 46-47 35.10522408989404 40.0 35.0 41.0 23.5 41.0 48-49 34.94527859486591 40.0 35.0 41.0 23.0 41.0 50-51 33.26298434965344 37.0 32.5 39.5 18.5 40.0 52-53 33.38359758490109 37.5 33.5 39.5 19.0 40.0 54-55 34.29067200634125 39.0 34.0 40.5 21.0 41.0 56-57 34.311024139138766 39.0 34.0 41.0 20.0 41.0 58-59 34.12258351854973 38.5 34.0 41.0 19.5 41.0 60-61 33.871686842964586 38.0 34.0 40.5 18.5 41.0 62-63 33.5803151729096 37.0 34.0 40.0 17.5 41.0 64-65 33.28829996365896 37.0 34.0 40.0 14.5 41.0 66-67 32.95038197589905 36.0 33.0 39.5 13.0 41.0 68-69 32.59121238175996 36.0 33.0 39.0 9.5 41.0 70-71 32.18831224192597 35.0 33.0 39.0 7.0 40.5 72-73 31.836134347283377 35.0 32.5 37.5 4.0 40.0 74-75 31.441791468283228 35.0 32.0 37.0 2.0 39.0 76-77 31.072181726251923 35.0 32.0 36.5 2.0 39.0 78-79 30.73273208228875 35.0 32.0 36.0 2.0 38.5 80-81 30.425041344513033 35.0 31.5 36.0 2.0 37.0 82-83 30.11659465391746 35.0 31.0 35.0 2.0 37.0 84-85 29.86024830408494 35.0 31.0 35.0 2.0 36.5 86-87 29.628630647344472 35.0 31.0 35.0 2.0 36.0 88-89 29.408359689363138 35.0 31.0 35.0 2.0 36.0 90-91 29.188366391387703 35.0 31.0 35.0 2.0 35.5 92-93 28.99962111835591 34.5 30.5 35.0 2.0 35.0 94-95 28.77260665962669 34.0 30.0 35.0 2.0 35.0 96-97 28.544099222881158 34.0 30.0 35.0 2.0 35.0 98-99 28.277737197684708 34.0 30.0 35.0 2.0 35.0 100-101 27.211469613099627 33.5 27.5 35.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 109216.0 3 18342.0 4 12279.0 5 9193.0 6 8431.0 7 8386.0 8 8993.0 9 9400.0 10 10226.0 11 10917.0 12 10678.0 13 10805.0 14 11472.0 15 12121.0 16 11975.0 17 12409.0 18 12145.0 19 11575.0 20 11738.0 21 12315.0 22 13574.0 23 15830.0 24 18276.0 25 21440.0 26 25643.0 27 30501.0 28 36356.0 29 43330.0 30 51604.0 31 63245.0 32 79317.0 33 102076.0 34 142524.0 35 209981.0 36 361746.0 37 665350.0 38 708657.0 39 125810.0 40 12.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.55152442096902 17.178265070811623 11.416937220348272 25.853273287871094 2 16.58489632504518 18.889970083057232 38.32992175214066 26.195211839756922 3 19.747230131322542 22.305233006267695 28.98437489706458 28.963161965345186 4 13.180585791369099 14.442139769995906 35.8903032057813 36.4869712328537 5 14.178651703157568 36.811596016874795 34.72583076197427 14.283921517993365 6 35.31514632163864 34.630096435034496 16.075347915731854 13.979409327595011 7 30.11181238248967 30.926890840128674 20.357965549947508 18.60333122743415 8 27.480399315992592 34.59363520175519 19.233955160245923 18.6920103220063 9 26.75584612675071 14.75223812792265 18.597291696500143 39.89462404882649 10-11 26.252196706372537 24.647885005507817 27.727932360209145 21.3719859279105 12-13 26.396723183336317 21.98738910897348 27.544781141677117 24.071106566013086 14-15 23.284963908579268 23.761934768208594 24.343362377820263 28.60973894539188 16-17 23.988160384999862 26.959423685551837 25.3190387383721 23.7333771910762 18-19 24.004888748060754 26.279308826494713 26.418086721781677 23.29771570366286 20-21 24.277159853124804 25.63391990675845 26.439823888044288 23.64909635207246 22-23 24.114831590542003 25.516029234768894 26.196516393105227 24.172622781583875 24-25 23.908537292122727 25.708784782316634 26.301891936745776 24.080785988814863 26-27 23.850716297519746 25.836986445470995 26.211288795573495 24.101008461435764 28-29 24.022991835755107 25.960399181830663 26.092217547710906 23.924391434703324 30-31 24.041523409510173 25.827934046756308 25.98268222828822 24.147860315445303 32-33 23.801531195742992 25.925179729170083 25.965145149534536 24.30814392555239 34-35 24.173758751430967 25.873423055303856 26.019453751048278 23.933364442216895 36-37 24.277254383019624 25.623695627843286 26.05574318763867 24.043306801498424 38-39 24.012231346792884 25.817717841237737 26.06255216617066 24.107498645798717 40-41 24.189422751382928 25.639066175244636 26.195397041427814 23.976114031944626 42-43 24.0156548465252 25.62072525391375 26.155594778441007 24.208025121120038 44-45 23.99210686045873 25.743312688071757 26.211512329031855 24.05306812243765 46-47 24.189585073428223 25.74446103575395 26.01149225315938 24.05446163765844 48-49 23.937133391911466 25.858090511133803 25.996949715157225 24.207826381797503 50-51 23.986562530455192 25.944648931102133 26.05444015463116 24.01434838381152 52-53 24.23151755143693 25.74527930678841 26.022199816155915 24.00100332561874 54-55 23.704288818070506 25.700916470496082 26.376029122571232 24.218765588862183 56-57 23.83694860777509 25.849265854806884 26.183096396599193 24.130689140818838 58-59 23.846411383824755 25.665821148080102 26.258217418122687 24.229550049972456 60-61 23.729355039713994 25.768690680117206 26.36317185493498 24.138782425233813 62-63 23.839857519201512 25.748391113090012 26.33798787099221 24.073763496716264 64-65 23.611869003818132 25.667999623348624 26.315628904727816 24.40450246810543 66-67 23.64323898066867 25.70522912494911 26.266879482224297 24.38465241215793 68-69 23.892331016314554 25.562751281989556 26.348929375064518 24.195988326631383 70-71 23.746811131952526 25.477126549585417 26.259470971077924 24.51659134738414 72-73 23.72647110670785 25.603637615095693 26.258432078266637 24.411459199929816 74-75 23.70228360619946 25.811293300362053 26.213419327773774 24.27300376566471 76-77 23.873520693350457 25.56511323700681 26.22106951824042 24.340296551402314 78-79 23.768786092848913 25.624290017296865 26.219422092220903 24.387501797633327 80-81 23.8810160079408 25.74780640047133 26.132855319579885 24.23832227200799 82-83 23.829027896302694 25.79006866949675 26.157793709139142 24.223109725061416 84-85 23.807617729148618 25.741580125552034 26.171824169103868 24.27897797619548 86-87 23.86141862379006 25.81840729995904 26.102018567275653 24.21815550897525 88-89 23.73012613379386 25.70823457223869 26.093349234075752 24.468290059891697 90-91 23.770019382242566 25.72008742628562 26.127576394902885 24.382316796568933 92-93 23.914886962907417 25.548080249020245 26.297163256153134 24.239869531919204 94-95 23.79291278237509 25.437569425680746 26.365692010112436 24.403825781831724 96-97 23.91509299344312 25.248887349945452 26.340397094696215 24.49562256191521 98-99 23.818633286689387 25.329890599790144 26.268900407555822 24.582575705964647 100-101 24.04737242279117 25.196660617347312 26.318267443262677 24.43769951659884 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 31.0 1 26.5 2 46.0 3 74.0 4 65.0 5 82.0 6 134.0 7 215.5 8 355.0 9 429.5 10 412.0 11 396.0 12 421.5 13 475.5 14 555.0 15 659.5 16 738.0 17 834.0 18 944.5 19 1022.5 20 1126.0 21 1275.0 22 1404.5 23 1657.0 24 1957.0 25 2347.0 26 2945.0 27 3991.5 28 5769.5 29 8261.5 30 11818.5 31 17143.5 32 25023.0 33 30512.0 34 34504.0 35 40812.0 36 49013.0 37 57593.0 38 65616.0 39 73719.5 40 81724.0 41 89241.5 42 95643.0 43 102995.0 44 110352.0 45 118513.5 46 124327.0 47 127770.0 48 131531.5 49 133412.5 50 133503.5 51 133407.0 52 132845.5 53 131455.5 54 128977.0 55 122180.5 56 112445.5 57 102202.5 58 92830.0 59 81385.0 60 67156.0 61 55726.0 62 46284.0 63 35358.5 64 25289.5 65 18634.0 66 14189.5 67 10910.5 68 8317.5 69 6380.5 70 4930.5 71 3608.5 72 2559.5 73 1851.5 74 1420.0 75 1123.0 76 828.0 77 544.0 78 353.0 79 257.5 80 178.5 81 122.5 82 114.5 83 98.0 84 79.0 85 72.5 86 64.0 87 51.5 88 37.5 89 30.5 90 34.5 91 28.0 92 18.5 93 15.5 94 14.5 95 12.0 96 10.5 97 15.5 98 13.0 99 9.5 100 10.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.05010059620367835 2 0.07077285271873092 3 0.06596688225504034 4 0.06678982240293257 5 0.06188509912149493 6 0.00984236416879095 7 0.01280494870120294 8 0.016261297322350265 9 0.006353097941727937 10-11 0.012706195883455874 12-13 0.02212063117534287 14-15 0.040307608443760926 16-17 0.026202414308888276 18-19 0.009891740577664484 20-21 0.020260786441106453 22-23 0.03597894326584785 24-25 0.03291760591568879 26-27 0.020984973771251605 28-29 0.012344102218383298 30-31 0.012261808203594076 32-33 0.008624412749910463 34-35 0.005612451808624939 36-37 9.216929656392862E-4 38-39 0.003933653906924811 40-41 0.0012344102218383298 42-43 0.21378339161944085 44-45 0.18547425053194852 46-47 0.19241986538015884 48-49 0.19882233973076033 50-51 0.1899181273305665 52-53 0.19655102492257778 54-55 0.1934073935576295 56-57 0.19620539006046303 58-59 0.20468167358375292 60-61 0.20859886868771987 62-63 0.19423033370552173 64-65 0.19442783934101587 66-67 0.1922881949564961 68-69 0.18720242484252217 70-71 0.17986179872332356 72-73 0.19064231466071166 74-75 0.18940790443887331 76-77 0.184256299113068 78-79 0.20158741862767818 80-81 0.21248314618577116 82-83 0.2110347715254809 84-85 0.20529064929319316 86-87 0.22392201424147304 88-89 0.2166965997429793 90-91 0.22262176880780332 92-93 0.21885270293045697 94-95 0.22281927444329744 96-97 0.2287279847051636 98-99 0.2228357332462553 100-101 0.22938633682347737 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 3037888.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 59.74580351221703 #Duplication Level Percentage of deduplicated Percentage of total 1 78.76467539411026 47.05858819800067 2 11.687792974684893 13.965931651139885 3 3.889139496768897 6.970792926166713 4 1.7656900346454012 4.219702794936152 5 1.0102842604880748 3.0180122459303007 6 0.6166298527642249 2.2104627613811223 7 0.42405827278735864 1.7734991570578562 8 0.3110040979450202 1.4864951781853981 9 0.22881879003343844 1.2303866222316953 >10 1.2223319350429902 12.759467661004456 >50 0.060251551142966056 2.438760877349171 >100 0.017444118179449034 1.716051410133168 >500 0.0011606955754445297 0.48648353983634235 >1k 7.185258316057148E-4 0.6653649766470993 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 3.2917605915688795E-5 2 0.0 0.0 0.0 0.0 3.2917605915688795E-5 3 0.0 0.0 0.0 0.0 3.2917605915688795E-5 4 0.0 0.0 0.0 3.2917605915688795E-5 3.2917605915688795E-5 5 0.0 0.0 0.0 3.2917605915688795E-5 3.2917605915688795E-5 6 0.0 0.0 0.0 3.2917605915688795E-5 9.875281774706638E-5 7 0.0 0.0 0.0 3.2917605915688795E-5 9.875281774706638E-5 8 0.0 0.0 0.0 3.2917605915688795E-5 1.3167042366275518E-4 9 0.0 0.0 0.0 6.583521183137759E-5 1.3167042366275518E-4 10-11 0.0 0.0 0.0 6.583521183137759E-5 1.3167042366275518E-4 12-13 0.0 0.0 0.0 6.583521183137759E-5 1.9750563549413277E-4 14-15 0.0 0.0 0.0 6.583521183137759E-5 2.7979965028335473E-4 16-17 0.0 0.0 0.0 6.583521183137759E-5 3.9501127098826554E-4 18-19 0.0 0.0 0.0 6.583521183137759E-5 4.608464828196431E-4 20-21 0.0 0.0 0.0 1.1521162070491077E-4 4.7730528577748753E-4 22-23 1.6458802957844397E-5 0.0 0.0 1.3167042366275518E-4 6.254345123980871E-4 24-25 3.2917605915688795E-5 0.0 0.0 2.797996502833548E-4 7.241873301451535E-4 26-27 3.2917605915688795E-5 0.0 0.0 6.58352118313776E-4 7.241873301451535E-4 28-29 3.2917605915688795E-5 0.0 0.0 0.004526170813407209 7.241873301451535E-4 30-31 3.2917605915688795E-5 0.0 0.0 0.01818697726841806 7.241873301451535E-4 32-33 3.2917605915688795E-5 0.0 0.0 0.045344002148861313 7.241873301451535E-4 34-35 4.937640887353319E-5 0.0 0.0 0.07872245454736976 7.571049360608423E-4 36-37 6.583521183137759E-5 1.6458802957844397E-5 0.0 0.1358345008110898 7.735637390186866E-4 38-39 6.583521183137759E-5 4.937640887353319E-5 0.0 0.23228308614405796 8.229401478922198E-4 40-41 6.583521183137759E-5 6.583521183137759E-5 0.0 0.3358254155518571 8.229401478922198E-4 42-43 6.583521183137759E-5 9.875281774706638E-5 0.0 0.4448649851475762 8.558577538079087E-4 44-45 6.583521183137759E-5 9.875281774706638E-5 0.0 0.5744451408346851 9.216929656392862E-4 46-47 6.583521183137759E-5 9.875281774706638E-5 0.0 0.7296845703330735 0.0010039869804285082 48-49 6.583521183137759E-5 9.875281774706638E-5 0.0 0.8918366970737566 0.0011521162070491078 50-51 6.583521183137759E-5 9.875281774706638E-5 0.0 1.0696082278214338 0.0011685750100069521 52-53 6.583521183137759E-5 9.875281774706638E-5 0.0 1.2451578201698021 0.0012837866307118628 54-55 6.583521183137759E-5 9.875281774706638E-5 0.0 1.4466464859797332 0.0013496218425432405 56-57 6.583521183137759E-5 9.875281774706638E-5 0.0 1.675374470684897 0.0013496218425432405 58-59 6.583521183137759E-5 9.875281774706638E-5 0.0 1.9158046642930877 0.0013989982514167737 60-61 9.875281774706638E-5 9.875281774706638E-5 0.0 2.1774173373080243 0.001448374660290307 62-63 9.875281774706638E-5 9.875281774706638E-5 0.0 2.4445107917079234 0.0015471274780373733 64-65 9.875281774706638E-5 9.875281774706638E-5 0.0 2.7310256335980787 0.0015635862809952176 66-67 9.875281774706638E-5 9.875281774706638E-5 0.0 3.058654565276929 0.001612962689868751 68-69 9.875281774706638E-5 9.875281774706638E-5 0.0 3.420764689152464 0.0016458802957844396 70-71 1.1521162070491077E-4 9.875281774706638E-5 0.0 3.8014897191733206 0.0018104683253628837 72-73 1.3167042366275518E-4 9.875281774706638E-5 0.0 4.199858585964986 0.0020408915667727056 74-75 1.3167042366275518E-4 9.875281774706638E-5 0.0 4.598424958392146 0.002073809172688394 76-77 1.3167042366275518E-4 9.875281774706638E-5 0.0 5.037907914972507 0.002106726778604083 78-79 1.3167042366275518E-4 9.875281774706638E-5 0.0 5.5323303558261525 0.0021561031874776163 80-81 1.3167042366275518E-4 1.1521162070491077E-4 0.0 6.050930778224872 0.0022383972022668383 82-83 1.3167042366275518E-4 1.3167042366275518E-4 0.0 6.585660827522279 0.0024359028377609706 84-85 1.3167042366275518E-4 1.3167042366275518E-4 0.0 7.133113531506099 0.0024359028377609706 86-87 1.3167042366275518E-4 1.3167042366275518E-4 0.0 7.722766606273832 0.0024688204436766597 88-89 1.3167042366275518E-4 1.3167042366275518E-4 0.0 8.36232277160975 0.0025017380495923483 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 2000 0.0 38.919308 1 GTATCAA 3285 0.0 37.998955 1 TCAACGC 3525 0.0 34.069824 4 CAACGCA 3555 0.0 33.647125 5 ATCAACG 3695 0.0 32.501266 3 AACGCAG 3790 0.0 31.670414 6 TATCAAC 4095 0.0 29.90562 2 GTACATG 6705 0.0 26.474274 1 ACGCAGA 4730 0.0 25.079315 7 TACATGG 6835 0.0 24.792295 2 ACATGGG 7030 0.0 24.104996 3 CGCAGAG 5100 0.0 23.074898 8 TATACCG 230 3.6616257E-9 22.701359 5 CATGGGG 5770 0.0 21.636568 4 GAGTACA 5180 0.0 20.249475 1 GCAGAGT 6130 0.0 18.191978 9 TCTATAC 815 0.0 18.05503 3 CCTATAC 790 0.0 18.025543 3 TAGTCCG 135 0.0094394665 17.581045 4 GTATAAT 1045 0.0 17.259115 1 >>END_MODULE