Basic Statistics
Measure | Value |
---|---|
Filename | SRR2921628_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1587857 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTACATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC | 1649 | 0.10385066161499429 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 3685 | 0.0 | 41.848724 | 1 |
GGTATCA | 2530 | 0.0 | 38.1254 | 1 |
GTACATG | 9215 | 0.0 | 35.666763 | 1 |
TCAACGC | 4385 | 0.0 | 35.158215 | 4 |
TACATGG | 9340 | 0.0 | 34.479485 | 2 |
CAACGCA | 4450 | 0.0 | 34.24338 | 5 |
AACGCAG | 4630 | 0.0 | 33.035458 | 6 |
ACATGGG | 9685 | 0.0 | 32.75852 | 3 |
TATCAAC | 4680 | 0.0 | 32.6887 | 2 |
CATGGGG | 8295 | 0.0 | 32.57888 | 4 |
ATCAACG | 4715 | 0.0 | 32.19253 | 3 |
ATGGGGG | 5285 | 0.0 | 31.761484 | 5 |
ACGCAGA | 5620 | 0.0 | 27.204897 | 7 |
TGGGGGG | 4340 | 0.0 | 26.329323 | 6 |
CGCAGAG | 5850 | 0.0 | 26.135303 | 8 |
TACGTCT | 325 | 2.3646862E-11 | 23.806099 | 6 |
CTACGTC | 480 | 0.0 | 23.561832 | 5 |
CTCTACG | 480 | 0.0 | 23.561832 | 3 |
TCTACGT | 380 | 0.0 | 23.496563 | 4 |
GCAGAGT | 6585 | 0.0 | 22.585037 | 9 |