##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921571_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6178948 Sequences flagged as poor quality 0 Sequence length 98 %GC 49 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.000344557034627 31.0 28.0 31.0 16.0 34.0 2 27.982196969451756 31.0 28.0 33.0 16.0 34.0 3 28.069375078087727 31.0 28.0 33.0 16.0 34.0 4 31.47629159526832 35.0 32.0 37.0 17.0 37.0 5 31.396388996961942 35.0 32.0 37.0 17.0 37.0 6 31.49056748818731 35.0 32.0 37.0 17.0 37.0 7 31.286939135917635 35.0 32.0 37.0 17.0 37.0 8 31.230864056470455 35.0 32.0 37.0 17.0 37.0 9 32.434229904508015 37.0 32.0 39.0 17.0 39.0 10-11 32.201467628470084 37.0 32.0 39.0 13.0 39.0 12-13 31.98365304255676 37.0 32.0 39.0 10.5 39.0 14-15 32.65248995460068 38.0 31.0 40.0 10.0 41.0 16-17 32.492265350023985 37.5 31.0 40.0 10.0 41.0 18-19 32.303036050797 37.0 31.0 40.0 10.0 41.0 20-21 32.17042205242705 37.0 31.0 40.0 8.5 41.0 22-23 31.942341074888475 37.0 30.0 40.0 8.0 41.0 24-25 32.03851351395092 37.0 30.5 40.0 5.0 41.0 26-27 31.778502262844743 37.0 30.0 40.0 2.0 41.0 28-29 31.569620508215962 37.0 30.0 40.0 2.0 41.0 30-31 31.301571885699637 37.0 30.0 40.0 2.0 41.0 32-33 31.0465105063192 36.0 29.5 40.0 2.0 41.0 34-35 30.698557667098022 36.0 28.5 39.5 2.0 41.0 36-37 30.392831595281265 36.0 28.0 39.0 2.0 41.0 38-39 30.164596384368345 35.5 27.0 39.0 2.0 40.0 40-41 29.92164887938853 35.0 27.0 39.0 2.0 40.0 42-43 29.659193441990446 35.0 26.5 39.0 2.0 40.0 44-45 29.387971382830862 35.0 26.0 39.0 2.0 40.0 46-47 29.074476027310798 35.0 25.0 39.0 2.0 40.0 48-49 28.77341798312593 34.5 24.0 39.0 2.0 40.0 50-51 27.860239073059038 33.5 23.5 37.5 2.0 39.5 52-53 28.06777779971607 33.5 24.0 38.0 2.0 39.5 54-55 28.624341392741936 34.5 24.5 38.5 2.0 40.0 56-57 28.591555390982414 34.5 25.0 39.0 2.0 40.0 58-59 28.325340899454083 34.0 24.0 38.5 2.0 40.0 60-61 27.955156605946513 34.0 23.0 38.0 2.0 40.0 62-63 27.505630408283093 34.0 22.5 38.0 2.0 40.0 64-65 27.030114996921807 33.0 21.5 37.0 2.0 40.0 66-67 26.67130561707268 33.0 20.5 36.5 2.0 39.0 68-69 26.200025716351718 32.5 19.0 36.0 2.0 39.0 70-71 25.761005756967045 32.0 18.0 35.5 2.0 39.0 72-73 25.272471867379366 32.0 13.5 35.0 2.0 38.0 74-75 24.813055312975607 31.5 9.5 35.0 2.0 37.0 76-77 24.379318453561996 31.0 7.0 35.0 2.0 36.5 78-79 23.971435266974247 31.0 2.0 34.5 2.0 36.0 80-81 23.524937578370945 31.0 2.0 34.0 2.0 35.5 82-83 22.976928758746634 30.0 2.0 34.0 2.0 35.0 84-85 22.55549277967706 30.0 2.0 34.0 2.0 35.0 86-87 22.056464789799172 29.5 2.0 34.0 2.0 35.0 88-89 21.534980873766862 29.0 2.0 34.0 2.0 35.0 90-91 20.929322758501932 29.0 2.0 34.0 2.0 35.0 92-93 20.362898587267605 29.0 2.0 34.0 2.0 35.0 94-95 19.666763015322353 27.0 2.0 33.5 2.0 35.0 96-97 19.01683053490659 26.5 2.0 33.0 2.0 35.0 98 18.53911135034637 25.0 2.0 33.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 400326.0 3 69363.0 4 50622.0 5 40875.0 6 37509.0 7 39234.0 8 45028.0 9 50913.0 10 53635.0 11 55604.0 12 56529.0 13 55655.0 14 54307.0 15 56372.0 16 60201.0 17 64071.0 18 66784.0 19 67213.0 20 69937.0 21 74511.0 22 80068.0 23 88881.0 24 99756.0 25 113447.0 26 128922.0 27 148021.0 28 168912.0 29 193622.0 30 223347.0 31 259781.0 32 303408.0 33 364517.0 34 443437.0 35 534071.0 36 638753.0 37 622573.0 38 281205.0 39 17538.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.015948976257135 17.16694971001714 13.24344313554699 24.573658178178736 2 16.265136579647503 18.73949315651425 39.42973058727482 25.56563967656342 3 20.478078456086017 22.947176047917388 27.683381998181527 28.891363497815064 4 14.194917863311849 14.627849020160678 34.669395374160246 36.50783774236723 5 15.3942649687304 36.83052940956299 32.5360207620362 15.239184859670404 6 35.2123161414993 32.622895478430806 16.858030353197755 15.306758026872142 7 31.101151448392695 30.90220103365498 19.105747916921647 18.890899601030675 8 28.321819977284594 34.01402385521837 18.694157363640823 18.96999880385621 9 28.255167005617167 15.870037234649509 18.271943234356552 37.602852525376775 10-11 27.181167267289965 24.74108083709306 25.797748419246986 22.280003476369988 12-13 27.29921092131257 21.59061003807013 26.466959009147384 24.643220031469923 14-15 24.789887641449678 23.179275080699767 23.71957729806485 28.311259979785707 16-17 24.94498575047383 26.23466558465704 24.454982025535934 24.365366639333192 18-19 25.042146447490026 25.86428552461398 25.729264692643426 23.364303335252565 20-21 25.48742497743107 24.855049374654662 25.731645702491164 23.925879945423112 22-23 25.48746914048709 24.242154509726866 25.49265272062228 24.777723629163763 24-25 25.11613892588114 24.695439483299396 25.307224606407065 24.881196984412405 26-27 24.749754599443367 24.89648068755725 25.548228609254853 24.805536103744526 28-29 24.72035910150109 25.38832871524181 25.272027324630642 24.619284858626465 30-31 25.51278477898619 24.987290610891222 25.08970261730009 24.410221992822496 32-33 25.20524123918799 24.99807376414974 24.99336338908734 24.80332160757493 34-35 25.271916061272726 25.173268387238334 25.314119446372086 24.240696105116857 36-37 25.218011634488107 25.049379857533598 25.407547774469048 24.325060733509247 38-39 25.35361027178681 25.061699977793932 25.10068846920644 24.484001281212816 40-41 25.32296376559143 24.893676911122153 25.11655696273238 24.66680236055403 42-43 24.95530919027144 24.88308309483218 25.02859051075084 25.133017204145542 44-45 24.705953772138837 24.89631839717141 25.373771965156845 25.02395586553291 46-47 24.96139909922574 24.66544803828534 25.208319873879915 25.164832988609 48-49 24.760790120787608 24.969811416612515 25.218534990797952 25.050863471801925 50-51 24.854025448368812 24.950848099058092 25.418323763743967 24.776802688829125 52-53 24.924022498596557 24.90872550552746 25.369177987984227 24.798074007891753 54-55 24.232837866252304 24.66329265193823 25.835446151747853 25.268423330061612 56-57 24.670210740114033 24.761788879352093 25.3437427097486 25.224257670785278 58-59 24.864778048689235 24.76041811819543 25.590768995288748 24.78403483782658 60-61 25.304820492209227 24.628706864408308 25.653870858669098 24.41260178471337 62-63 24.92685801579901 24.655481714443077 25.7169058848709 24.70075438488701 64-65 24.542102746726 24.4372974170856 25.910570880986572 25.11002895520183 66-67 24.768947596186244 24.723626168861696 25.437856788511642 25.069569446440415 68-69 24.41255104145218 24.68648733275963 25.646684678567595 25.254276947220593 70-71 24.4706918891409 24.401492588664038 25.756007226328453 25.37180829586661 72-73 24.306590609141978 24.892988834686356 25.408136880827463 25.392283675344203 74-75 24.18790635508589 24.785345221377355 25.738301058016884 25.288447365519872 76-77 24.206484768309057 24.25189837897423 25.724814774042137 25.816802078674577 78-79 24.12034221928174 24.33445846041888 25.97036430671227 25.574835013587116 80-81 24.4718435684307 24.5533957482378 25.581254988510256 25.393505694821243 82-83 24.38360300845379 24.46532413504844 25.789566598134396 25.361506258363377 84-85 24.278382070176445 24.55671838643789 25.524486700294176 25.640412843091493 86-87 23.984103923975685 24.739036930901197 25.688781153468977 25.588077991654146 88-89 23.82486620570086 24.279213868277395 25.938637223144447 25.957282702877304 90-91 24.196576205620417 23.921844200140864 26.080662582368895 25.800917011869817 92-93 24.429689563447177 23.934875944136085 25.89441055861966 25.74102393379707 94-95 24.241019226801686 24.0614958448304 25.818477100100267 25.879007828267646 96-97 23.831858459490032 23.897345308210465 26.101514837695728 26.16928139460378 98 23.751733089950307 23.66297941385255 25.904228780042594 26.68105871615455 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 169.0 1 164.5 2 207.5 3 298.5 4 337.0 5 370.0 6 559.0 7 1105.0 8 1699.5 9 1914.0 10 1854.0 11 1817.5 12 2011.5 13 2320.5 14 2600.0 15 2841.5 16 3026.0 17 3104.5 18 3118.5 19 3030.0 20 2894.5 21 2835.5 22 2832.5 23 2904.5 24 3111.0 25 3590.0 26 4356.0 27 5419.0 28 6876.0 29 9546.5 30 13912.0 31 20178.5 32 29258.5 33 39393.5 34 50898.5 35 65512.0 36 81348.5 37 95970.0 38 110731.0 39 124447.5 40 137314.0 41 152574.0 42 170682.5 43 190721.0 44 209839.5 45 230400.5 46 253284.0 47 276188.0 48 294618.0 49 307752.5 50 313890.0 51 314836.5 52 316414.5 53 316528.0 54 312227.5 55 302827.0 56 285681.5 57 261091.0 58 233254.5 59 201513.5 60 169208.0 61 137728.5 62 109028.5 63 83312.5 64 59687.5 65 42483.5 66 30990.0 67 22411.5 68 15660.0 69 10645.5 70 7206.5 71 4869.5 72 3262.5 73 2163.0 74 1436.5 75 952.5 76 577.0 77 351.5 78 203.0 79 114.5 80 79.0 81 57.0 82 47.0 83 35.0 84 25.5 85 26.5 86 19.5 87 14.5 88 11.5 89 13.0 90 16.0 91 12.5 92 9.5 93 11.5 94 12.5 95 10.0 96 7.5 97 8.0 98 9.0 99 3.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.26169503287614654 2 0.12898635819560222 3 0.12667204838105128 4 0.12183303695062656 5 0.1181269044504016 6 0.043097951301742626 7 0.03288585694522757 8 0.012316012369743199 9 0.009111583395749568 10-11 0.0014403746398254202 12-13 0.005664394650998843 14-15 0.010462946119630721 16-17 0.005203151086560366 18-19 0.046350932229887676 20-21 0.09126148981994993 22-23 0.09076787828607717 24-25 0.06847443933821744 26-27 0.0786298897482225 28-29 0.09326830392487524 30-31 0.0708696690763541 32-33 0.01773764724998495 34-35 0.27706981835742917 36-37 0.36152594260382187 38-39 0.3353402553314901 40-41 0.3314237310299423 42-43 0.30951061572293537 44-45 0.2935693907765529 46-47 0.29891819772556755 48-49 0.2928087434948473 50-51 0.29454042985958123 52-53 0.3378406809702882 54-55 0.3255084846158278 56-57 0.31042501085945373 58-59 0.29225848801446463 60-61 0.29971121297670733 62-63 0.29937944129000604 64-65 0.31450337500817294 66-67 0.33521887544611156 68-69 0.29764775492527207 70-71 0.2757103636411894 72-73 0.26147654908246515 74-75 0.24904724881970197 76-77 0.25242970162558415 78-79 0.257980808383563 80-81 0.24938711249876191 82-83 0.25756811677327596 84-85 0.2515153064890658 86-87 0.24742885034798803 88-89 0.26859750235800656 90-91 0.2535868565328597 92-93 0.24457237704541293 94-95 0.25833685604734014 96-97 0.25697740133110036 98 0.25607919017929914 >>END_MODULE >>Sequence Length Distribution pass #Length Count 98 6178948.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 45.31710747846046 #Duplication Level Percentage of deduplicated Percentage of total 1 74.99932244406119 33.98752356009233 2 10.730236210131013 9.725265352075505 3 4.76922045151031 6.483818273686932 4 2.563599988374843 4.646997448198508 5 1.5710633894163522 3.5598024236827603 6 1.0433137555274954 2.836797695579743 7 0.7344860418794104 2.3299348030894773 8 0.5316841965209196 1.9275511902669924 9 0.4017058213534546 1.6383731292897965 >10 2.385561359945833 19.851414739031036 >50 0.18469605117619642 5.758147441234813 >100 0.082947345681887 6.383257482621425 >500 0.0018024596275343688 0.530704223181937 >1k 3.6048479349253963E-4 0.3404122379687288 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 1.6183984717139553E-5 0.0 4 0.0 0.0 0.0 1.6183984717139553E-5 0.0 5 0.0 0.0 0.0 1.6183984717139553E-5 0.0 6 0.0 0.0 0.0 1.6183984717139553E-5 0.0 7 0.0 0.0 0.0 1.6183984717139553E-5 0.0 8 0.0 0.0 0.0 1.6183984717139553E-5 0.0 9 0.0 0.0 0.0 3.2367969434279106E-5 0.0 10-11 0.0 0.0 0.0 4.045996179284888E-5 0.0 12-13 0.0 0.0 0.0 6.473593886855821E-5 0.0 14-15 0.0 0.0 0.0 7.282793122712799E-5 0.0 16-17 0.0 0.0 0.0 1.4565586245425598E-4 0.0 18-19 0.0 0.0 0.0 2.670357478328026E-4 0.0 20-21 0.0 0.0 0.0 2.9131172490851195E-4 0.0 22-23 0.0 0.0 0.0 3.9650762556991904E-4 0.0 24-25 0.0 0.0 0.0 6.635433734027217E-4 0.0 26-27 0.0 0.0 8.091992358569776E-6 0.0010276830295383615 0.0 28-29 0.0 0.0 1.6183984717139553E-5 0.003123509050407934 0.0 30-31 0.0 0.0 1.6183984717139553E-5 0.010624785966802115 0.0 32-33 0.0 0.0 1.6183984717139553E-5 0.02699488650818877 0.0 34-35 0.0 0.0 1.6183984717139553E-5 0.0486733340367972 0.0 36-37 0.0 0.0 1.6183984717139553E-5 0.08641438639716664 0.0 38-39 0.0 0.0 1.6183984717139553E-5 0.15181386863912755 0.0 40-41 8.091992358569776E-6 1.6183984717139553E-5 1.6183984717139553E-5 0.22705321358910935 0.0 42-43 1.6183984717139553E-5 1.6183984717139553E-5 2.427597707570933E-5 0.30094119581520995 0.0 44-45 1.6183984717139553E-5 1.6183984717139553E-5 3.2367969434279106E-5 0.3909079668577887 0.0 46-47 1.6183984717139553E-5 1.6183984717139553E-5 3.2367969434279106E-5 0.4993325724702652 0.0 48-49 1.6183984717139553E-5 1.6183984717139553E-5 3.2367969434279106E-5 0.6190293234382294 0.0 50-51 1.6183984717139553E-5 1.6183984717139553E-5 3.2367969434279106E-5 0.7522477936373635 0.0 52-53 1.6183984717139553E-5 1.6183984717139553E-5 3.2367969434279106E-5 0.8932831284548761 0.0 54-55 1.6183984717139553E-5 1.6183984717139553E-5 3.2367969434279106E-5 1.0525659060409636 0.0 56-57 1.6183984717139553E-5 1.6183984717139553E-5 3.2367969434279106E-5 1.2353316454516206 0.0 58-59 1.6183984717139553E-5 1.6183984717139553E-5 3.2367969434279106E-5 1.439209392925786 1.6183984717139553E-5 60-61 1.6183984717139553E-5 1.6183984717139553E-5 3.2367969434279106E-5 1.664385264287707 1.6183984717139553E-5 62-63 1.6183984717139553E-5 2.427597707570933E-5 3.2367969434279106E-5 1.9038030422007113 1.6183984717139553E-5 64-65 2.427597707570933E-5 4.045996179284888E-5 3.2367969434279106E-5 2.155488280529307 1.6183984717139553E-5 66-67 4.045996179284888E-5 6.473593886855821E-5 3.2367969434279106E-5 2.4439111641658093 1.6183984717139553E-5 68-69 5.6643946509988435E-5 6.473593886855821E-5 3.2367969434279106E-5 2.7721304662217583 1.6183984717139553E-5 70-71 6.473593886855821E-5 6.473593886855821E-5 3.2367969434279106E-5 3.13925606753771 3.2367969434279106E-5 72-73 6.473593886855821E-5 6.473593886855821E-5 3.2367969434279106E-5 3.512102707451171 3.2367969434279106E-5 74-75 6.473593886855821E-5 6.473593886855821E-5 3.2367969434279106E-5 3.89406902275274 3.2367969434279106E-5 76-77 6.473593886855821E-5 6.473593886855821E-5 3.2367969434279106E-5 4.308629883274628 3.2367969434279106E-5 78-79 6.473593886855821E-5 7.282793122712799E-5 3.2367969434279106E-5 4.77986705827594 3.2367969434279106E-5 80-81 6.473593886855821E-5 8.091992358569776E-5 3.2367969434279106E-5 5.288303122149596 3.2367969434279106E-5 82-83 6.473593886855821E-5 8.091992358569776E-5 3.2367969434279106E-5 5.820076491985367 3.2367969434279106E-5 84-85 6.473593886855821E-5 8.091992358569776E-5 4.855195415141866E-5 6.3521330815536885 3.2367969434279106E-5 86 6.473593886855821E-5 8.091992358569776E-5 4.855195415141866E-5 6.76662111414435 3.2367969434279106E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 13540 0.0 39.047493 1 GGTATCA 8035 0.0 37.166412 1 TATCAAC 17580 0.0 29.561716 2 TCAACGC 17415 0.0 29.419163 4 CAACGCA 17825 0.0 28.71577 5 ATCAACG 18315 0.0 28.199526 3 AACGCAG 18810 0.0 27.332472 6 GTACATG 29305 0.0 26.771608 1 TACATGG 30395 0.0 25.33715 2 ACATGGG 31590 0.0 23.723936 3 ACGCAGA 22185 0.0 22.529123 7 CATGGGG 25115 0.0 21.918081 4 CGCAGAG 23195 0.0 21.347483 8 GTATATG 1725 0.0 20.272919 1 ATGGGGG 16495 0.0 19.276075 5 GTAAGTA 4040 0.0 19.107939 2 GCAGAGT 25170 0.0 18.412918 9 TGTAAGT 4170 0.0 18.096708 1 ATATGTA 2560 0.0 17.974295 1 GAGTACA 23285 0.0 17.804934 1 >>END_MODULE