##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921570_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8647197 Sequences flagged as poor quality 0 Sequence length 101 %GC 49 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.115161595138865 31.0 30.0 34.0 26.0 34.0 2 30.111504225010716 31.0 30.0 34.0 26.0 34.0 3 30.29492030770202 31.0 30.0 34.0 26.0 34.0 4 33.95410408713945 35.0 35.0 37.0 30.0 37.0 5 33.48314060614093 35.0 35.0 37.0 28.0 37.0 6 33.38206473149623 35.0 33.0 37.0 28.0 37.0 7 33.1900547657235 35.0 33.0 37.0 27.0 37.0 8 33.09094102979266 35.0 33.0 37.0 26.0 37.0 9 34.41193302292061 38.0 34.0 39.0 27.0 39.0 10-11 34.21245404724791 37.0 34.0 39.0 26.5 39.0 12-13 34.04473779191107 37.0 33.0 39.0 26.0 39.0 14-15 34.925866497548284 38.0 34.0 40.0 25.0 41.0 16-17 34.782386535197475 38.0 33.0 40.0 25.0 41.0 18-19 34.65017398123346 38.0 33.5 40.0 25.0 41.0 20-21 34.51290961683884 38.0 33.0 40.0 24.0 41.0 22-23 34.34828858415045 38.0 33.0 40.0 23.5 41.0 24-25 34.209284407421265 38.0 33.0 40.0 23.0 41.0 26-27 34.12990353984071 38.0 33.0 40.0 22.5 41.0 28-29 34.145738035111265 38.0 33.0 40.0 22.5 41.0 30-31 33.99830291827514 38.0 33.0 40.0 21.5 41.0 32-33 33.83944028336582 38.0 33.0 40.0 20.5 41.0 34-35 33.65138159799066 38.0 32.0 40.0 19.0 41.0 36-37 33.49840075344646 38.0 32.0 40.0 18.0 41.0 38-39 33.33154957612276 38.0 32.0 40.0 18.0 41.0 40-41 33.33630423824044 38.0 32.0 40.0 17.5 41.0 42-43 33.142915559805104 38.0 32.0 40.0 15.5 41.0 44-45 32.954287730463406 38.0 31.5 40.0 15.0 41.0 46-47 32.7052103704819 37.0 31.0 40.0 13.0 41.0 48-49 32.4304725565984 37.0 31.0 40.0 9.0 41.0 50-51 32.169063686186405 37.0 31.0 40.0 8.5 41.0 52-53 31.857480233190017 36.5 30.0 40.0 7.5 41.0 54-55 31.549060290866507 36.0 30.0 39.0 6.5 41.0 56-57 31.218513872183088 36.0 29.5 39.0 2.0 40.0 58-59 30.75589043478482 35.0 28.5 39.0 2.0 40.0 60-61 30.411390361524088 35.0 28.0 39.0 2.0 40.0 62-63 30.082535994033673 35.0 28.0 38.0 2.0 40.0 64-65 29.634405808032362 34.0 28.0 38.0 2.0 40.0 66-67 29.219024037500244 34.0 27.5 37.0 2.0 39.5 68-69 28.795764801010087 34.0 26.0 37.0 2.0 39.0 70-71 28.331044961737312 33.5 26.0 36.0 2.0 39.0 72-73 27.858247533854033 33.0 26.0 36.0 2.0 38.5 74-75 27.321008067701012 33.0 25.5 35.0 2.0 37.5 76-77 25.803946180479063 30.5 23.0 34.0 2.0 36.0 78-79 26.683925901075227 32.0 25.0 35.0 2.0 36.0 80-81 26.74053262577457 33.0 25.0 35.0 2.0 36.0 82-83 26.422165356010737 32.5 24.5 35.0 2.0 36.0 84-85 26.00829320761398 32.0 23.5 35.0 2.0 35.0 86-87 25.572787228046266 32.0 21.0 34.5 2.0 35.0 88-89 25.137614709136383 32.0 19.5 34.0 2.0 35.0 90-91 24.721054001660885 31.0 18.0 34.0 2.0 35.0 92-93 24.315446612353114 31.0 14.5 34.0 2.0 35.0 94-95 23.942295231622456 31.0 4.5 34.0 2.0 35.0 96-97 23.41746319645545 31.0 2.0 34.0 2.0 35.0 98-99 22.67061135533283 31.0 2.0 34.0 2.0 35.0 100-101 20.102104416032155 27.5 2.0 32.5 2.0 34.5 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 214831.0 3 97214.0 4 51175.0 5 36488.0 6 31241.0 7 31056.0 8 34977.0 9 40340.0 10 46151.0 11 51784.0 12 57829.0 13 62623.0 14 67974.0 15 71739.0 16 75895.0 17 78257.0 18 78265.0 19 77303.0 20 78486.0 21 81261.0 22 88185.0 23 99514.0 24 114560.0 25 135925.0 26 160848.0 27 191330.0 28 224767.0 29 263774.0 30 311646.0 31 366472.0 32 437737.0 33 530156.0 34 660744.0 35 837601.0 36 1081395.0 37 1182874.0 38 567006.0 39 27774.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.745507475631484 18.511600769277756 13.63710910955277 25.105782645537992 2 16.018485527738065 20.14723383773956 38.20269157739786 25.631589057124522 3 19.749608948290046 23.59206928860391 28.66851373983283 27.989808023273216 4 14.465041606519272 15.963840894662473 34.81599436325261 34.75512313556565 5 15.094960917087691 36.699723270172555 33.467862166662925 14.737453646076823 6 34.65793799634183 34.19463545646084 16.703711421360932 14.443715125836402 7 30.313910308164278 31.075994925148727 19.98203004241549 18.62806472427151 8 27.44314778951406 34.623447014783366 19.136616139475848 18.796789056226725 9 27.162734492299336 15.964352782788401 18.66988154447966 38.2030311804326 10-11 26.315578934620298 25.060845941815057 26.9258561184081 21.69771900515655 12-13 26.81697077565009 22.01484119284696 27.132386926684067 24.03580110481889 14-15 24.08986418544554 23.687341129505178 24.228920551872175 27.99387413317711 16-17 24.427736529723536 26.762843676618704 24.91591619150428 23.893503602153483 18-19 24.486761977849195 26.276488225057314 26.036611243167346 23.200138553926145 20-21 25.01547550947113 25.350695292945897 25.951573167977372 23.682256029605604 22-23 24.863728844082072 25.019201943335617 25.784473094219056 24.332596118363252 24-25 24.612719610681953 25.242428343703494 25.734289381329845 24.410562664284704 26-27 24.44790405817859 25.462586101697642 25.80782305300261 24.28168678712116 28-29 24.54078569312736 25.642710339751908 25.639911257527014 24.176592709593717 30-31 24.89936640818749 25.41187690100535 25.480341579576205 24.208415111230956 32-33 24.659633653189296 25.463856700518683 25.43889717659485 24.43761246969717 34-35 24.752438076763532 25.451005660929958 25.65050136549884 24.14605489680767 36-37 24.7719011509377 25.387720901800968 25.60396493867716 24.23641300858417 38-39 24.780977168641275 25.460841621475794 25.53691105908833 24.221270150794602 40-41 24.834433773075475 25.279554491792318 25.56482155410257 24.32119018102964 42-43 24.6097774120281 25.287439357720633 25.484700102647306 24.61808312760396 44-45 24.488425654838583 25.26577981346299 25.682395515709334 24.56339901598909 46-47 24.582161822848818 25.154342668457915 25.63742210567479 24.62607340301848 48-49 24.46493027919258 25.291478394514737 25.650266402264094 24.59332492402859 50-51 24.431551270510965 25.30581641501845 25.70939814066488 24.553234173805706 52-53 24.533225667704812 25.273494328298206 25.591414028506026 24.60186597549096 54-55 24.249042043004675 25.134609013189934 25.792587643110902 24.82376130069449 56-57 24.349905884870164 25.229343102416347 25.64178422624641 24.778966786467084 58-59 24.45109281238975 25.144495216685144 25.76046225978832 24.643949711136784 60-61 24.584995467419706 25.15342320140892 25.742840833814316 24.51874049735706 62-63 24.411004979178774 25.135452619153515 25.704708981946727 24.748833419720988 64-65 24.26729123294009 24.99386421466574 25.774543141337038 24.964301411057136 66-67 24.297739190322208 25.108263978740847 25.598960786142396 24.995036044794546 68-69 24.13096296148845 25.112348429222532 25.638258455694523 25.118430153594502 70-71 24.137471302449452 24.96424301975391 25.652671894365714 25.245613783430926 72-73 24.146372605335667 25.135296795566735 25.480685816556843 25.23764478254076 74-75 23.926776828887196 25.152863068081437 25.594939277648898 25.325420825382473 76-77 23.935684949975624 24.920465410173684 25.689391513892467 25.454458125958222 78-79 23.87881563300184 24.958063703590803 25.76139932664679 25.40172133676057 80-81 23.92861942845669 25.096005553644556 25.58217499393351 25.393200023965246 82-83 23.800694262767376 25.058568445625372 25.684408834582772 25.45632845702448 84-85 23.836153899496267 25.05883204148355 25.518094716911882 25.5869193421083 86-87 23.576615003954416 25.12338612546455 25.66397816688352 25.636020703697515 88-89 23.52897440707416 24.93508090016818 25.694846218638013 25.841098474119654 90-91 23.63582956247314 24.831109279113736 25.690541278880414 25.84251987953271 92-93 23.676689396497224 24.80995708172424 25.62905665665826 25.884296865120277 94-95 23.5348053232181 24.848858422405392 25.615838973519793 26.00049728085671 96-97 23.30206826618815 24.76285491674233 25.748113936038802 26.186962881030716 98-99 23.143052211422372 24.768478750433758 25.66384709955207 26.424621938591798 100-101 23.461508726073475 24.605879764075752 25.6768302248756 26.25578128497517 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 160.0 1 157.0 2 203.0 3 285.5 4 286.0 5 264.5 6 439.0 7 1016.0 8 1477.0 9 1476.5 10 1241.0 11 1018.5 12 990.0 13 1066.5 14 1224.5 15 1345.5 16 1454.0 17 1574.5 18 1738.0 19 1960.5 20 2139.5 21 2346.0 22 2637.0 23 3011.0 24 3462.0 25 3948.0 26 4774.5 27 6122.0 28 7812.0 29 10505.0 30 15094.0 31 22052.5 32 32992.0 33 47672.0 34 65254.5 35 85303.5 36 108974.5 37 134482.5 38 159283.5 39 183698.0 40 208994.5 41 233061.5 42 256192.0 43 281955.5 44 307474.0 45 331031.5 46 354269.5 47 376807.5 48 396007.0 49 409713.5 50 414661.0 51 416655.0 52 417252.0 53 412453.0 54 402781.5 55 385340.5 56 359327.5 57 325054.5 58 288789.5 59 251737.5 60 211785.5 61 173300.5 62 137931.0 63 105252.0 64 76549.5 65 54760.5 66 39657.0 67 29152.0 68 21185.5 69 15109.5 70 10693.0 71 7435.5 72 4915.0 73 3283.0 74 2285.5 75 1479.5 76 896.0 77 481.5 78 273.5 79 158.5 80 82.0 81 45.0 82 26.5 83 14.5 84 5.5 85 4.0 86 4.0 87 3.0 88 2.0 89 2.0 90 1.5 91 1.0 92 0.5 93 0.5 94 0.0 95 0.5 96 0.5 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.2239338365946792 2 0.0 3 3.469332316587676E-5 4 0.012443338575494463 5 0.014097053646401257 6 0.10404527617446441 7 0.13499172043842647 8 0.1514941778243285 9 0.10916832356195887 10-11 0.11818858758508681 12-13 0.09406516354374718 14-15 0.11624576148779774 16-17 0.07072812149416742 18-19 0.0753770267983949 20-21 0.05214406471831277 22-23 0.0785861591912385 24-25 0.07098832141791149 26-27 0.049640363229842 28-29 0.017416048229270134 30-31 0.02999237787690046 32-33 0.03702934025904579 34-35 0.04223912095445495 36-37 0.03501712751542494 38-39 0.03609262053356712 40-41 0.02069456726844549 42-43 0.029460413588357014 44-45 0.01687830172019904 46-47 0.029518235793633475 48-49 3.4115101113112146E-4 50-51 0.01577967981994628 52-53 0.0077944332712669775 54-55 0.015305537736679295 56-57 0.010084192600214845 58-59 0.007291380085361765 60-61 0.029633880204186395 62-63 0.012634151852906787 64-65 0.013842635943184824 66-67 0.05660793896565557 68-69 0.07581069333796836 70-71 0.03158248852200314 72-73 0.05346819321914373 74-75 0.04630402198539018 76-77 0.20011108802077712 78-79 0.07415697826706157 80-81 0.015531044337257495 82-83 0.010442690272928904 84-85 0.023539419768047378 86-87 0.16698474661789248 88-89 0.3773361471931309 90-91 0.27689319440739 92-93 0.2769394521716112 94-95 0.0019890838615102676 96-97 0.0056203183528720346 98-99 0.004862847463750392 100-101 0.005071007402745653 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 8647197.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 51.18894259781 #Duplication Level Percentage of deduplicated Percentage of total 1 73.31642198659117 37.5299011654843 2 13.42835403254259 13.74766487509786 3 5.130667627533782 7.879003520228064 4 2.5891994390492625 5.301535258390982 5 1.431978067162113 3.6650721540642155 6 0.8981670287683841 2.758573228732222 7 0.6110649564755214 2.1895838286391114 8 0.4245554594741013 1.7386036035685295 9 0.3199077498262161 1.4738165498203863 >10 1.6909868956230394 15.732536536756445 >50 0.1133954020954626 3.9605493726538024 >100 0.044551946540962256 3.680516817303518 >500 6.132406003442014E-4 0.1942807320805642 >1k 1.3616771708551724E-4 0.14836235717984964 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.1564441055292252E-5 2 0.0 0.0 0.0 0.0 1.1564441055292252E-5 3 0.0 0.0 0.0 0.0 1.1564441055292252E-5 4 0.0 0.0 0.0 0.0 2.3128882110584504E-5 5 0.0 0.0 0.0 0.0 2.3128882110584504E-5 6 0.0 0.0 0.0 0.0 3.469332316587676E-5 7 0.0 0.0 0.0 0.0 3.469332316587676E-5 8 0.0 0.0 0.0 0.0 3.469332316587676E-5 9 0.0 0.0 0.0 1.1564441055292252E-5 3.469332316587676E-5 10-11 0.0 0.0 0.0 5.203998474881513E-5 3.469332316587676E-5 12-13 0.0 0.0 0.0 7.516886685939963E-5 5.7822205276461265E-5 14-15 0.0 0.0 0.0 8.67333079146919E-5 1.2142663108056866E-4 16-17 0.0 0.0 0.0 1.098621900252764E-4 1.6768439530173766E-4 18-19 0.0 0.0 0.0 1.2720885160821477E-4 1.8503105688467603E-4 20-21 0.0 0.0 0.0 1.8503105688467606E-4 1.8503105688467603E-4 22-23 0.0 0.0 0.0 3.353687906034753E-4 2.0815993899526053E-4 24-25 0.0 0.0 0.0 5.608753911816743E-4 2.370710416334912E-4 26-27 0.0 0.0 0.0 0.0011159685618357023 2.833288058546602E-4 28-29 0.0 0.0 0.0 0.00410537657462875 3.0645768796524466E-4 30-31 0.0 0.0 0.0 0.01562934208622748 3.353687906034753E-4 32-33 0.0 5.782220527646126E-6 0.0 0.040677921411990496 3.816265548246443E-4 34-35 0.0 1.1564441055292252E-5 0.0 0.07441139597027799 4.0475543693522885E-4 36-37 0.0 1.734666158293838E-5 0.0 0.12942344207030326 4.0475543693522885E-4 38-39 0.0 2.3128882110584504E-5 0.0 0.21997879775376922 4.278843190458133E-4 40-41 0.0 2.8911102638230632E-5 0.0 0.32263634100159855 4.278843190458133E-4 42-43 0.0 3.469332316587676E-5 0.0 0.43252744212951316 4.3366653957345946E-4 44-45 0.0 3.469332316587676E-5 0.0 0.5652004921363536 4.452309806287517E-4 46-47 0.0 3.469332316587676E-5 0.0 0.7201697844977974 4.741420832669823E-4 48-49 0.0 3.469332316587676E-5 0.0 0.8853620427521196 4.857065243222746E-4 50-51 0.0 3.469332316587676E-5 0.0 1.0628819951713833 4.857065243222746E-4 52-53 1.1564441055292252E-5 3.469332316587676E-5 0.0 1.2470804123000783 5.261820680157975E-4 54-55 1.1564441055292252E-5 3.469332316587676E-5 0.0 1.4577035772401161 5.782220527646126E-4 56-57 1.1564441055292252E-5 3.469332316587676E-5 0.0 1.7011524081156009 5.897864938199049E-4 58-59 1.1564441055292252E-5 3.469332316587676E-5 0.0 1.9664580325855883 5.95568714347551E-4 60-61 1.1564441055292252E-5 3.469332316587676E-5 0.0 2.2511745713668834 6.013509348751972E-4 62-63 1.1564441055292252E-5 3.469332316587676E-5 0.0 2.5488779774532717 6.244798169857816E-4 64-65 1.1564441055292252E-5 3.469332316587676E-5 0.0 2.8744805975855527 6.244798169857816E-4 66-67 1.1564441055292252E-5 3.469332316587676E-5 0.0 3.2442015603437735 6.360442580410739E-4 68-69 1.1564441055292252E-5 4.047554369352288E-5 0.0 3.650194392471919 6.360442580410739E-4 70-71 1.1564441055292252E-5 4.625776422116901E-5 0.0 4.087544206521489 6.4182647856872E-4 72-73 1.1564441055292252E-5 4.625776422116901E-5 0.0 4.544079428281789 7.632531096492887E-4 74-75 1.1564441055292252E-5 4.625776422116901E-5 0.0 5.03261924066261 7.80599771232227E-4 76-77 1.1564441055292252E-5 4.625776422116901E-5 0.0 5.56582092439897 7.863819917598732E-4 78-79 1.1564441055292252E-5 4.625776422116901E-5 0.0 6.146222874302506 7.863819917598732E-4 80-81 1.1564441055292252E-5 4.625776422116901E-5 0.0 6.757137601930429 8.326397559810421E-4 82-83 1.1564441055292252E-5 4.625776422116901E-5 0.0 7.3920138514249185 9.13590843368088E-4 84-85 1.1564441055292252E-5 4.625776422116901E-5 0.0 8.053332195392333 9.13590843368088E-4 86-87 1.1564441055292252E-5 5.7822205276461265E-5 0.0 8.749667666875173 9.193730638957341E-4 88-89 1.1564441055292252E-5 5.7822205276461265E-5 0.0 9.497239394453487 9.251552844233802E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 13545 0.0 39.31367 1 GGTATCA 8510 0.0 36.906845 1 TCAACGC 16800 0.0 30.731358 4 CAACGCA 17260 0.0 29.884983 5 TATCAAC 17525 0.0 29.783173 2 ATCAACG 17950 0.0 28.92126 3 AACGCAG 19010 0.0 27.205357 6 GTACATG 28375 0.0 24.971888 1 TACATGG 29525 0.0 23.469114 2 ACGCAGA 22560 0.0 22.229694 7 ACATGGG 30990 0.0 21.533579 3 CGCAGAG 23540 0.0 20.981085 8 CATGGGG 23830 0.0 19.692207 4 AGTACAT 21530 0.0 19.125216 2 GAGTACA 23195 0.0 18.91599 1 GCAGAGT 26925 0.0 17.229475 9 AGAGTAC 21615 0.0 16.419464 10-11 GTAAGTA 3735 0.0 16.403269 2 GTGGTAT 5175 0.0 16.368246 1 ATGGGGG 13880 0.0 16.117416 5 >>END_MODULE