##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921568_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5097491 Sequences flagged as poor quality 0 Sequence length 101 %GC 49 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.992216366836157 31.0 30.0 34.0 26.0 34.0 2 29.987789875450492 31.0 30.0 34.0 26.0 34.0 3 30.16498057573814 31.0 30.0 34.0 26.0 34.0 4 33.81309510894673 35.0 35.0 37.0 30.0 37.0 5 33.31623361375233 35.0 33.0 37.0 27.0 37.0 6 33.206672655233724 35.0 33.0 37.0 27.0 37.0 7 33.011953920075584 35.0 33.0 37.0 26.0 37.0 8 32.90697403879673 35.0 33.0 37.0 26.0 37.0 9 34.21358958750491 37.0 34.0 39.0 26.0 39.0 10-11 34.00730751658021 37.0 33.0 39.0 25.0 39.0 12-13 33.82891926636064 37.0 33.0 39.0 25.0 39.0 14-15 34.68421523451439 38.0 33.0 40.0 25.0 41.0 16-17 34.53657907390126 38.0 33.0 40.0 24.0 41.0 18-19 34.41379003906039 38.0 33.0 40.0 23.5 41.0 20-21 34.2841414531188 38.0 33.0 40.0 22.5 41.0 22-23 34.109291316061174 38.0 33.0 40.0 21.5 41.0 24-25 33.952051999699464 38.0 33.0 40.0 20.0 41.0 26-27 33.85750470182292 38.0 32.5 40.0 19.5 41.0 28-29 33.86136689598864 38.0 33.0 40.0 19.0 41.0 30-31 33.69940211763003 38.0 32.0 40.0 18.5 41.0 32-33 33.53113904467904 38.0 32.0 40.0 18.0 41.0 34-35 33.32132906168937 38.0 32.0 40.0 16.5 41.0 36-37 33.14991384977433 38.0 32.0 40.0 16.0 41.0 38-39 32.96846389723886 38.0 31.0 40.0 15.0 41.0 40-41 32.97896533804572 38.0 32.0 40.0 15.0 41.0 42-43 32.77710455987073 37.5 31.0 40.0 12.5 41.0 44-45 32.56803533346111 37.0 31.0 40.0 9.0 41.0 46-47 32.29066848769325 37.0 31.0 40.0 8.5 41.0 48-49 31.990903662213434 37.0 30.0 40.0 7.5 41.0 50-51 31.71863040072067 36.5 30.0 40.0 4.0 41.0 52-53 31.39534949644835 36.0 30.0 39.0 2.0 41.0 54-55 31.070813661073654 36.0 29.0 39.0 2.0 40.5 56-57 30.723219619220515 35.0 29.0 39.0 2.0 40.0 58-59 30.24586732963334 35.0 28.0 39.0 2.0 40.0 60-61 29.88582186805234 35.0 28.0 38.0 2.0 40.0 62-63 29.542548579291264 34.0 27.5 38.0 2.0 40.0 64-65 29.087965432405866 34.0 26.5 37.5 2.0 40.0 66-67 28.671493485716795 34.0 26.0 37.0 2.0 39.0 68-69 28.23733430819201 34.0 26.0 36.0 2.0 39.0 70-71 27.785916542079228 33.0 26.0 36.0 2.0 39.0 72-73 27.32848258094031 33.0 25.0 35.0 2.0 38.0 74-75 26.816128463983553 32.5 24.0 35.0 2.0 37.0 76-77 25.3226380389882 30.5 21.5 34.0 2.0 35.5 78-79 26.21581215150748 32.0 23.5 35.0 2.0 36.0 80-81 26.28738314594376 32.0 24.0 35.0 2.0 36.0 82-83 25.991442064341065 32.0 23.0 35.0 2.0 35.5 84-85 25.59956221599999 32.0 20.5 35.0 2.0 35.0 86-87 25.190270370266468 32.0 20.0 34.0 2.0 35.0 88-89 24.771698763175845 31.5 18.5 34.0 2.0 35.0 90-91 24.368942093276868 31.0 15.0 34.0 2.0 35.0 92-93 23.98291178934892 31.0 8.5 34.0 2.0 35.0 94-95 23.628080265369768 31.0 2.0 34.0 2.0 35.0 96-97 23.126336368225076 31.0 2.0 34.0 2.0 35.0 98-99 22.39759167794509 31.0 2.0 34.0 2.0 35.0 100-101 19.808902654266582 26.5 2.0 32.5 2.0 34.5 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 141154.0 3 63108.0 4 33090.0 5 23651.0 6 20554.0 7 20616.0 8 23066.0 9 26537.0 10 29954.0 11 32962.0 12 36337.0 13 39424.0 14 42446.0 15 45367.0 16 47835.0 17 49549.0 18 48011.0 19 46449.0 20 47005.0 21 48574.0 22 52558.0 23 58986.0 24 68220.0 25 80702.0 26 94743.0 27 112794.0 28 132389.0 29 155637.0 30 182614.0 31 216113.0 32 257460.0 33 313931.0 34 393413.0 35 499384.0 36 639883.0 37 671066.0 38 289027.0 39 12882.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.627108228198466 18.886676558242797 13.595922232153129 24.890292981405608 2 16.326188707346418 20.261928858726776 37.50882542019201 25.9030570137348 3 19.89450880404403 23.722846178911293 28.317051127349615 28.065593889695062 4 14.530599559840518 15.810464196183126 34.35929955114877 35.299636692827576 5 15.144001641853771 36.88902850052524 32.91781430963463 15.049155547986354 6 34.60450876212789 33.6851211242546 16.632008303082134 15.078361810535371 7 30.67271964727179 31.08365312178022 19.561898831278405 18.681728399669588 8 27.86033455781733 33.58274245775294 19.280603045760678 19.27631993866905 9 27.533000845457945 15.71078857365058 18.731518495497273 38.02469208539419 10-11 26.5761227155329 24.81919688890198 26.380225672450873 22.22445472311424 12-13 26.948300296844863 22.05242672025943 26.62673390633997 24.372539076555736 14-15 24.44192349246821 23.644249070666287 23.902215650987294 28.011611785878216 16-17 24.519608817978018 26.667672455975534 24.708503510168697 24.104215215877755 18-19 24.550965976415437 25.935666490008057 26.138959682670222 23.374407850906284 20-21 25.155553802154763 25.06043835150753 25.84491510170739 23.939092744630326 22-23 25.104459699048085 24.69912710810299 25.66383261396476 24.532580578884165 24-25 24.715166181812865 25.081876440659716 25.617841363531202 24.58511601399622 26-27 24.498114894755403 25.214325347437782 25.868111132199566 24.419448625607245 28-29 24.49401962998404 25.301971455037297 25.83684859153893 24.367160323439727 30-31 24.900890795609172 25.111756641719786 25.561010491976482 24.426342070694563 32-33 24.678630345710577 25.224608451243775 25.376996797587847 24.719764405457802 34-35 24.86014340446707 25.20555919234331 25.723103910195032 24.211193492994585 36-37 24.86705026941221 25.064716037351324 25.539810543077007 24.528423150159455 38-39 24.83369485417133 25.13623019689721 25.50026954611652 24.529805402814937 40-41 24.767501215803353 24.98872493843478 25.632588101717197 24.611185744044672 42-43 24.718494224473446 24.84436014136073 25.488191583074936 24.948954051090887 44-45 24.372923258038405 24.969690726706396 25.746096681627545 24.911289333627646 46-47 24.73009528126665 24.86339682474271 25.510722699233607 24.89578519475703 48-49 24.412458648612223 25.05938729224747 25.401439262724594 25.126714796415712 50-51 24.37758311310029 25.047322430886197 25.568680972895226 25.00641348311829 52-53 24.552634488243832 25.052046849079883 25.53249741200397 24.862821250672322 54-55 24.230675353632307 24.843859078403618 25.691950717702788 25.23351485026129 56-57 24.403617543784613 24.93249379676704 25.444771852282322 25.219116807166024 58-59 24.344775582221974 24.876186694387062 25.635100188058303 25.143937535332668 60-61 24.640966363427108 24.989035455657028 25.43007995924624 24.93991822166963 62-63 24.323723263095708 24.89400787664359 25.564943069638623 25.217325790622073 64-65 24.09906549262427 24.683398703428526 25.658000260754427 25.559535543192773 66-67 24.185738203343423 24.92342580141969 25.393642268231353 25.497193727005534 68-69 24.12922974894178 24.752622394526284 25.401802406343123 25.71634545018881 70-71 23.950676252391286 24.6129417486788 25.601002307469727 25.835379691460187 72-73 24.10432061641663 24.66006089422494 25.352726814500297 25.882891674858126 74-75 23.76088442170027 24.80006382570323 25.493245898138735 25.94580585445777 76-77 23.69670678523809 24.465270042155517 25.814431380274883 26.023591792331512 78-79 23.591396587039828 24.423609694536157 25.795111659700552 26.189882058723455 80-81 23.7069094065498 24.677399354563264 25.490827012908735 26.1248642259782 82-83 23.630384883152082 24.523304300176466 25.602627904693133 26.24368291197832 84-85 23.50652594680975 24.453787003519437 25.552266441037684 26.487420608633133 86-87 23.288515872970642 24.580853309614458 25.753440163914938 26.377190653499966 88-89 23.25168936465553 24.291641481231462 25.730684490159984 26.725984663953025 90-91 23.23385076700318 24.185920063987997 25.822366625366005 26.75786254364282 92-93 23.24731518912028 24.202735372854853 25.760256664605368 26.7896927734195 94-95 22.993947107916625 24.107829131647165 25.87142498976929 27.026798770666915 96-97 22.832512262117085 24.026618127628037 25.964161129152597 27.176708481102285 98-99 22.654184936682203 23.948340124068533 25.901201693810805 27.496273245438456 100-101 22.905151068624612 23.702129362619434 26.024223243382266 27.368496325373687 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 241.0 1 182.0 2 196.5 3 288.0 4 256.5 5 256.0 6 472.0 7 979.5 8 1373.5 9 1393.5 10 1204.5 11 991.0 12 977.0 13 1034.0 14 1097.5 15 1229.5 16 1332.0 17 1365.0 18 1474.0 19 1606.5 20 1731.5 21 1900.5 22 2092.5 23 2293.0 24 2516.5 25 2880.0 26 3484.0 27 4400.5 28 5376.5 29 6683.5 30 9225.5 31 13143.5 32 19985.0 33 29232.5 34 39246.5 35 50081.5 36 64278.5 37 79229.5 38 90166.0 39 101311.5 40 112105.5 41 121468.5 42 132136.0 43 148618.0 44 165662.0 45 179704.0 46 193327.5 47 206644.5 48 221142.5 49 232461.5 50 237665.0 51 238640.5 52 240850.0 53 245141.5 54 246080.5 55 239719.0 56 224674.5 57 203545.0 58 184256.5 59 165337.0 60 142964.5 61 118314.0 62 93810.5 63 71881.5 64 52689.0 65 37782.5 66 27040.5 67 19314.0 68 13888.5 69 9975.5 70 7047.0 71 4913.0 72 3505.0 73 2655.5 74 1983.0 75 1413.0 76 938.5 77 533.5 78 259.5 79 132.5 80 70.0 81 45.5 82 29.5 83 15.0 84 7.5 85 4.0 86 4.0 87 4.5 88 1.5 89 0.5 90 0.5 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.24239375802723337 2 0.0 3 7.846997670030216E-5 4 0.013771480910903031 5 0.015949022764336414 6 0.10605217351045838 7 0.1350860648895702 8 0.15160399498498378 9 0.10938714752022122 10-11 0.11850928231163134 12-13 0.09344793350297234 14-15 0.11652791539994872 16-17 0.07155481000358804 18-19 0.07577257125122927 20-21 0.05159400968044867 22-23 0.07885251783671614 24-25 0.07233950977059106 26-27 0.05002461014644263 28-29 0.01765574475756799 30-31 0.03132913819759564 32-33 0.03839143610062283 34-35 0.04281518103710237 36-37 0.03468372970153356 38-39 0.03703782900254263 40-41 0.020922057537718065 42-43 0.031231050726720264 44-45 0.01698874995561542 46-47 0.02993629611116528 48-49 3.9234988350151084E-4 50-51 0.015821509052198424 52-53 0.007856806417117754 54-55 0.015949022764336414 56-57 0.010828856784641698 58-59 0.00787642391129283 60-61 0.029818591146114824 62-63 0.012751371213799101 64-65 0.014546371930818515 66-67 0.057332126726658265 68-69 0.076733828465808 70-71 0.03235905664178711 72-73 0.05404619645233312 74-75 0.046395373724053654 76-77 0.2244731770983019 78-79 0.07894079656050398 80-81 0.015438967915784451 82-83 0.00985779082297546 84-85 0.023913725399417086 86-87 0.17651821258732975 88-89 0.3790982661862473 90-91 0.27538057448262293 92-93 0.27710691397002957 94-95 0.0018244269582820252 96-97 0.005649838322421757 98-99 0.0044629799248296865 100-101 0.004668963613667979 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 5097491.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.513428260344085 #Duplication Level Percentage of deduplicated Percentage of total 1 70.9560691290774 27.327614780387382 2 11.866024668180813 9.1400257958691 3 5.364523943974351 6.1981862420146285 4 3.1132764135034487 4.7961179122434565 5 1.8668448414741035 3.5949297437653156 6 1.2755835647915301 2.9476257667603543 7 0.9095148530610134 2.4519974531557915 8 0.6745334061651562 2.078287515803783 9 0.5080266864152215 1.7609264407433662 >10 3.059157784408863 22.122762804598374 >50 0.267770436031928 7.114913754389181 >100 0.13373671991113717 8.989270740146269 >500 0.004320359549424 1.0447623742168566 >1k 6.171934556586112E-4 0.43257867590595833 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.961749417507554E-5 2 0.0 0.0 0.0 0.0 1.961749417507554E-5 3 0.0 0.0 0.0 0.0 1.961749417507554E-5 4 0.0 0.0 0.0 0.0 1.961749417507554E-5 5 0.0 1.961749417507554E-5 0.0 0.0 1.961749417507554E-5 6 0.0 1.961749417507554E-5 0.0 0.0 1.1770496505045326E-4 7 0.0 1.961749417507554E-5 0.0 0.0 1.1770496505045326E-4 8 0.0 1.961749417507554E-5 0.0 0.0 1.373224592255288E-4 9 0.0 1.961749417507554E-5 0.0 1.961749417507554E-5 1.373224592255288E-4 10-11 0.0 1.961749417507554E-5 0.0 1.961749417507554E-5 1.5693995340060432E-4 12-13 9.80874708753777E-6 3.923498835015108E-5 0.0 3.923498835015108E-5 1.5693995340060432E-4 14-15 1.961749417507554E-5 3.923498835015108E-5 0.0 5.885248252522662E-5 2.4521867718844427E-4 16-17 1.961749417507554E-5 3.923498835015108E-5 0.0 1.1770496505045326E-4 2.9426241262613313E-4 18-19 1.961749417507554E-5 3.923498835015108E-5 0.0 1.1770496505045326E-4 3.5311489515135974E-4 20-21 1.961749417507554E-5 3.923498835015108E-5 0.0 1.5693995340060432E-4 3.82541136413973E-4 22-23 1.961749417507554E-5 3.923498835015108E-5 0.0 3.1387990680120865E-4 4.315848718516619E-4 24-25 1.961749417507554E-5 3.923498835015108E-5 0.0 8.337435024407106E-4 4.5120236602673745E-4 26-27 1.961749417507554E-5 3.923498835015108E-5 0.0 0.0021088806238206206 4.904373543768885E-4 28-29 1.961749417507554E-5 3.923498835015108E-5 0.0 0.007415412798178555 4.904373543768885E-4 30-31 1.961749417507554E-5 3.923498835015108E-5 0.0 0.02694462824946626 5.100548485519641E-4 32-33 1.961749417507554E-5 3.923498835015108E-5 0.0 0.07062297903027195 5.296723427270396E-4 34-35 1.961749417507554E-5 4.9043735437688855E-5 0.0 0.12984819394482502 6.081423194273418E-4 36-37 1.961749417507554E-5 6.86612296127644E-5 0.0 0.22482629199345325 6.179510665148796E-4 38-39 1.961749417507554E-5 7.846997670030216E-5 0.0 0.37387020398858967 6.375685606899551E-4 40-41 1.961749417507554E-5 7.846997670030216E-5 0.0 0.535479121002862 6.473773077774929E-4 42-43 1.961749417507554E-5 7.846997670030216E-5 2.942624126261331E-5 0.7034539148769463 6.86612296127644E-4 44-45 1.961749417507554E-5 7.846997670030216E-5 3.923498835015108E-5 0.9021398958821114 7.356560315653328E-4 46-47 2.942624126261331E-5 7.846997670030216E-5 3.923498835015108E-5 1.136676847492227 7.74891019915484E-4 48-49 3.923498835015108E-5 7.846997670030216E-5 3.923498835015108E-5 1.3815424097855198 9.024047320534749E-4 50-51 3.923498835015108E-5 7.846997670030216E-5 3.923498835015108E-5 1.6432397820810276 9.024047320534749E-4 52-53 3.923498835015108E-5 7.846997670030216E-5 3.923498835015108E-5 1.9101848340683683 9.710659616662394E-4 54-55 3.923498835015108E-5 9.808747087537771E-5 3.923498835015108E-5 2.2118724682397675 0.0010593446854540792 56-57 3.923498835015108E-5 9.808747087537771E-5 3.923498835015108E-5 2.55278528201423 0.0010789621796291548 58-59 3.923498835015108E-5 9.808747087537771E-5 3.923498835015108E-5 2.92617485739553 0.0010887709267166927 60-61 3.923498835015108E-5 1.0789621796291548E-4 3.923498835015108E-5 3.3230661907985715 0.0011181971679793058 62-63 3.923498835015108E-5 1.1770496505045326E-4 3.923498835015108E-5 3.7274808332177534 0.0011378146621543815 64-65 3.923498835015108E-5 1.2751371213799104E-4 3.923498835015108E-5 4.171748415053601 0.0011378146621543815 66-67 3.923498835015108E-5 1.373224592255288E-4 3.923498835015108E-5 4.668836099955842 0.0011378146621543815 68-69 3.923498835015108E-5 1.373224592255288E-4 5.885248252522663E-5 5.217763013215718 0.0011476234092419192 70-71 3.923498835015108E-5 1.373224592255288E-4 5.885248252522663E-5 5.812800846534108 0.0012162846388546835 72-73 3.923498835015108E-5 1.373224592255288E-4 5.885248252522663E-5 6.425013796002778 0.0013928420864303636 74-75 3.923498835015108E-5 1.373224592255288E-4 5.885248252522663E-5 7.057746644378577 0.001412459580605439 76-77 3.923498835015108E-5 1.373224592255288E-4 5.885248252522663E-5 7.748458996788813 0.001412459580605439 78-79 3.923498835015108E-5 1.373224592255288E-4 5.885248252522663E-5 8.508587852337552 0.001412459580605439 80-81 3.923498835015108E-5 1.373224592255288E-4 5.885248252522663E-5 9.315180742839958 0.0014320770747805146 82-83 5.885248252522663E-5 1.373224592255288E-4 5.885248252522663E-5 10.139537274317895 0.0014811208102182036 84-85 5.885248252522663E-5 1.373224592255288E-4 5.885248252522663E-5 10.978449986473738 0.0014909295573057413 86-87 5.885248252522663E-5 1.373224592255288E-4 5.885248252522663E-5 11.853566784129683 0.001500738304393279 88-89 5.885248252522663E-5 1.373224592255288E-4 5.885248252522663E-5 12.787320271874929 0.0015105470514808167 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5880 0.0 44.9328 1 GTATCAA 10860 0.0 43.39635 1 TCAACGC 14370 0.0 32.22616 4 TATCAAC 14820 0.0 31.214354 2 CAACGCA 14905 0.0 30.97292 5 ATCAACG 15535 0.0 29.901178 3 AACGCAG 15510 0.0 29.576954 6 GTACATG 22640 0.0 25.253084 1 ACGCAGA 18160 0.0 24.424131 7 TACATGG 24510 0.0 23.175625 2 CGCAGAG 19155 0.0 22.733747 8 ACATGGG 25235 0.0 22.228352 3 GCAGAGT 20220 0.0 20.170214 9 GTATAGG 1385 0.0 19.935452 1 CATGGGG 18280 0.0 19.616947 4 GAGTACA 18080 0.0 19.220837 1 AGTACAT 17370 0.0 18.675167 2 AGAGTAC 17945 0.0 17.699625 10-11 GTGGTAT 3635 0.0 17.548832 1 CATATAG 870 0.0 17.469938 3 >>END_MODULE