##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921567_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8718444 Sequences flagged as poor quality 0 Sequence length 98 %GC 49 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.060435669484143 31.0 28.0 31.0 16.0 34.0 2 28.03170370767995 31.0 28.0 33.0 16.0 34.0 3 28.130150058886656 31.0 28.0 34.0 16.0 34.0 4 31.53432149131198 35.0 32.0 37.0 17.0 37.0 5 31.461205462809648 35.0 32.0 37.0 17.0 37.0 6 31.552192226044006 35.0 32.0 37.0 17.0 37.0 7 31.355540277599992 35.0 32.0 37.0 17.0 37.0 8 31.30266134645127 35.0 32.0 37.0 17.0 37.0 9 32.5337959388166 37.0 32.0 39.0 17.0 39.0 10-11 32.30947018757017 37.0 32.0 39.0 15.0 39.0 12-13 32.11039062704308 37.0 32.0 39.0 11.0 39.0 14-15 32.816292792613 38.0 32.0 40.0 10.0 41.0 16-17 32.66814640318846 38.0 31.5 40.0 10.0 41.0 18-19 32.48466308896404 38.0 31.0 40.0 10.0 41.0 20-21 32.3448745555973 37.0 31.0 40.0 10.0 41.0 22-23 32.11662172745504 37.0 30.5 40.0 8.0 41.0 24-25 32.2292144102778 37.0 31.0 40.0 8.0 41.0 26-27 31.984240593849087 37.0 30.0 40.0 4.5 41.0 28-29 31.791209704392205 37.0 30.0 40.0 2.0 41.0 30-31 31.545899761471198 37.0 30.0 40.0 2.0 41.0 32-33 31.302156611890837 37.0 30.0 40.0 2.0 41.0 34-35 30.954895908031297 36.5 29.5 40.0 2.0 41.0 36-37 30.65322739929281 36.0 28.5 39.5 2.0 41.0 38-39 30.433266130974747 36.0 28.0 39.0 2.0 41.0 40-41 30.207992446817343 36.0 27.5 39.0 2.0 40.0 42-43 29.956089068186937 35.0 27.0 39.0 2.0 40.0 44-45 29.687097147151487 35.0 26.5 39.0 2.0 40.0 46-47 29.398203567058527 35.0 26.0 39.0 2.0 40.0 48-49 29.107436946317485 35.0 25.5 39.0 2.0 40.0 50-51 28.192333976108582 34.0 23.5 38.0 2.0 39.5 52-53 28.39908543313463 34.0 25.0 38.0 2.0 39.5 54-55 28.96391454713708 35.0 26.0 39.0 2.0 40.0 56-57 28.93639036965771 35.0 26.0 39.0 2.0 40.0 58-59 28.687369615495612 34.5 26.0 39.0 2.0 40.0 60-61 28.338266438369047 34.0 25.0 38.0 2.0 40.0 62-63 27.913261070438715 34.0 23.5 38.0 2.0 40.0 64-65 27.440764372633467 34.0 22.5 37.5 2.0 40.0 66-67 27.08183467141614 33.0 22.0 37.0 2.0 39.5 68-69 26.620545535418934 33.0 20.5 36.0 2.0 39.0 70-71 26.19160947756274 32.5 19.5 36.0 2.0 39.0 72-73 25.70789478030713 32.0 18.0 35.0 2.0 38.5 74-75 25.250700813126745 32.0 15.0 35.0 2.0 37.5 76-77 24.807568013283102 31.5 9.5 35.0 2.0 37.0 78-79 24.39520538297889 31.0 7.0 35.0 2.0 36.0 80-81 23.941226152281303 31.0 2.0 34.5 2.0 36.0 82-83 23.391784933183033 31.0 2.0 34.0 2.0 35.0 84-85 22.96287026675861 30.0 2.0 34.0 2.0 35.0 86-87 22.450899610068035 30.0 2.0 34.0 2.0 35.0 88-89 21.923448725483585 29.5 2.0 34.0 2.0 35.0 90-91 21.32052365077989 29.0 2.0 34.0 2.0 35.0 92-93 20.763045160352007 29.0 2.0 34.0 2.0 35.0 94-95 20.076691895939227 28.5 2.0 34.0 2.0 35.0 96-97 19.423507222160282 27.0 2.0 33.5 2.0 35.0 98 18.935810220264074 26.0 2.0 33.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 559350.0 3 93724.0 4 67640.0 5 55077.0 6 50475.0 7 52502.0 8 60181.0 9 67970.0 10 72133.0 11 75592.0 12 76658.0 13 74494.0 14 72913.0 15 75964.0 16 80766.0 17 85078.0 18 89343.0 19 90615.0 20 94437.0 21 100622.0 22 109005.0 23 121117.0 24 136602.0 25 155088.0 26 176274.0 27 203339.0 28 233217.0 29 267317.0 30 308682.0 31 359287.0 32 421780.0 33 505596.0 34 617044.0 35 760963.0 36 925197.0 37 931269.0 38 458969.0 39 32163.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.70136295734499 17.261169521961673 12.740206505341655 25.29726101535168 2 16.3233155974497 18.89722235592069 38.8626182566146 25.916843790015008 3 20.50879922624473 22.317027153227322 27.776964124795605 29.39720949573234 4 14.032649020900376 14.69083038339392 34.90580352122779 36.370717074477916 5 15.41671146051847 35.95175219765528 33.181137607631584 15.450398734194662 6 35.1147158975696 33.20562449815488 16.696711866628 14.982947737647509 7 30.927081046800236 30.297360509385165 19.614429275028495 19.161129168786104 8 27.547089465884035 33.89282898384401 19.156203392490394 19.40387815778156 9 27.09551355047544 16.13248359595972 18.692111526711102 38.07989132685374 10-11 26.584804892849483 24.712817279705668 26.503768205941235 22.198609621503614 12-13 27.005405223114288 21.74174201386945 26.717100656766384 24.53575210624988 14-15 24.16824579010986 23.403670525658544 23.996124298227368 28.431959386004223 16-17 24.56579270211245 26.44034039388225 24.683173462794382 24.310693441210912 18-19 24.566854983019624 25.909901475610813 25.902350306975663 23.620893234393897 20-21 25.080778428314687 25.113599015324983 25.806534207439086 23.999088348921248 22-23 24.911995815158317 24.76525998133768 25.616098183954612 24.706646019549392 24-25 24.607487603844632 25.024920875359808 25.691327581290725 24.67626393950483 26-27 24.530476507437466 25.19742688670121 25.733882482140054 24.538214123721268 28-29 24.547337152410577 25.339445464472593 25.604869036423615 24.508348346693214 30-31 24.873541850448337 25.200418524285755 25.412332461283377 24.513707163982527 32-33 24.617520095001748 25.245503598876194 25.392650305381615 24.74432600074044 34-35 24.815355176576926 25.18612065864944 25.524055279896896 24.47446888487674 36-37 24.852085353326938 25.05843930890517 25.509850465518834 24.579624872249052 38-39 24.784820621477056 25.1807430779063 25.48758370134095 24.54685259927569 40-41 24.878388717508265 25.06462205146147 25.45749280430715 24.59949642672311 42-43 24.735632400911364 24.943816848798082 25.417848157105148 24.902702593185406 44-45 24.622379680038385 25.047881792154726 25.525304162534923 24.804434365271966 46-47 24.802350090402257 24.906064064745237 25.483618705509635 24.80796713934287 48-49 24.663306193112746 25.03511555214976 25.43986516364584 24.86171309109165 50-51 24.5600097279741 25.163622924525736 25.54591665352166 24.730450693978504 52-53 24.609079514120996 25.10115953894811 25.5568798216962 24.732881125234698 54-55 24.36044781893444 24.917838148521362 25.82073771579 24.9009763167542 56-57 24.475567705092946 24.98788816370402 25.727347642826853 24.809196488376177 58-59 24.519256803708096 24.894284749962665 25.751625486523793 24.834832959805446 60-61 24.59111571991155 24.898319203630592 25.791274288430106 24.719290788027752 62-63 24.383614354986932 24.934224035846032 25.83167545751387 24.850486151653165 64-65 24.335201658657983 24.791149556839482 25.83602488033023 25.037623904172314 66-67 24.336982928095217 24.85433047405389 25.75159936655786 25.05708723129303 68-69 24.27927053773659 24.862850017046632 25.779385524797956 25.078493920418826 70-71 24.278584517580644 24.67288963593518 25.86861248521255 25.179913361271623 72-73 24.2848140827832 24.780252772446694 25.761022797520067 25.173910347250033 74-75 24.19753778049618 24.888224856049582 25.821549393043984 25.09268797041025 76-77 24.25507017499055 24.680686019461394 25.837542038156624 25.226701767391436 78-79 24.152392665281113 24.67363124037558 25.92019636255283 25.25377973179047 80-81 24.22865823058564 24.793904993289154 25.80387650203166 25.17356027409355 82-83 24.273204619585524 24.69781537292835 25.86119073821066 25.167789269275463 84-85 24.209772271905223 24.72427402100065 25.789198137902737 25.276755569191394 86-87 24.129151669295158 24.77872334551528 25.942801204160958 25.1493237810286 88-89 24.04916295918041 24.54854887380862 25.98742672570416 25.414861441306808 90-91 24.20887112587617 24.509437314716568 25.96844935076633 25.31324220864093 92-93 24.274331670351497 24.4939607607758 25.96458477322277 25.267122795649932 94-95 24.260068637117197 24.422756782315876 25.997849769157938 25.319324811408993 96-97 24.171677611796063 24.350745738503587 26.04672165260381 25.430854997096542 98 24.18129613003545 24.30118417776886 25.95154594722947 25.565973744966218 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 129.0 1 142.5 2 235.0 3 376.0 4 432.5 5 503.5 6 803.5 7 1332.0 8 1888.0 9 2144.0 10 2184.0 11 2411.0 12 2789.5 13 3129.0 14 3451.5 15 3701.0 16 3808.0 17 3880.0 18 3818.5 19 3628.0 20 3499.0 21 3419.5 22 3453.0 23 3694.5 24 4169.0 25 4966.5 26 6101.0 27 7696.0 28 10329.5 29 14548.0 30 21138.0 31 30999.0 32 44610.5 33 60796.5 34 80128.0 35 103044.0 36 127419.0 37 151878.5 38 176640.0 39 199456.0 40 221685.5 41 245354.0 42 271146.0 43 298923.5 44 324536.0 45 348121.5 46 371431.0 47 393413.0 48 408356.0 49 415723.5 50 418329.0 51 419432.5 52 420145.5 53 417990.5 54 409901.0 55 393290.0 56 367614.5 57 335968.0 58 302637.5 59 264877.0 60 225094.5 61 186597.0 62 150242.0 63 115520.5 64 84693.0 65 61984.5 66 45886.0 67 34376.0 68 24977.5 69 17930.0 70 12730.5 71 8927.0 72 6417.0 73 4462.0 74 3190.0 75 2257.0 76 1500.0 77 898.0 78 506.5 79 290.5 80 157.5 81 111.0 82 83.0 83 64.5 84 59.0 85 36.0 86 25.5 87 20.5 88 17.5 89 20.5 90 18.5 91 15.0 92 17.0 93 17.0 94 11.0 95 7.5 96 8.0 97 9.0 98 7.5 99 4.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.30688962388242674 2 0.15045115848653728 3 0.1473772154756055 4 0.14145872818590108 5 0.13640048614179318 6 0.0499056941812094 7 0.03976627021977775 8 0.015679403343073606 9 0.010632631235573687 10-11 0.0019556241916562174 12-13 0.006652563232613527 14-15 0.012100783121391845 16-17 0.007581628097857829 18-19 0.05231438086887981 20-21 0.1029025362782625 22-23 0.10225448485991309 24-25 0.07882140436986232 26-27 0.08890347864825421 28-29 0.10935437562023682 30-31 0.08442446840284804 32-33 0.022630184927493944 34-35 0.3263139615279974 36-37 0.42440485939922307 38-39 0.39335000603318665 40-41 0.3889283454708202 42-43 0.36332171199356217 44-45 0.34548022559988917 46-47 0.35107181969626694 48-49 0.3439375191261193 50-51 0.3452278869945142 52-53 0.3944396500109423 54-55 0.38020545868047095 56-57 0.36352243588420136 58-59 0.3428536101166676 60-61 0.3523220427865339 62-63 0.3512094589355624 64-65 0.3686953772943888 66-67 0.3916581903835134 68-69 0.34994776590868737 70-71 0.3236758761081679 72-73 0.30685521407260286 74-75 0.2917206327184071 76-77 0.2953049879083928 78-79 0.30233605904906885 80-81 0.2916403431621514 82-83 0.30241061363702054 84-85 0.2943759230431485 86-87 0.28966177909727925 88-89 0.3150791586205062 90-91 0.2964921263473161 92-93 0.28587096504835036 94-95 0.3022787093660291 96-97 0.3007589427654751 98 0.30014530115694954 >>END_MODULE >>Sequence Length Distribution pass #Length Count 98 8718444.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 54.06033565469364 #Duplication Level Percentage of deduplicated Percentage of total 1 77.17992329772785 41.72372559278677 2 11.693843462663708 12.6434620537009 3 4.303201275390597 6.978975160119644 4 2.066187340941387 4.467951247070811 5 1.1934418613725457 3.2258933805081087 6 0.7543638975792792 2.4468699305351254 7 0.4999870107221054 1.8920625935836748 8 0.3638370451053999 1.5735322225607857 9 0.27853127904453573 1.3551744991930865 >10 1.5033553420319665 15.161488901404018 >50 0.11874144116802629 4.359073331568514 >100 0.04396650410185451 3.8815669766659484 >500 5.133832264808989E-4 0.1670621276884718 >1k 1.0685892425223235E-4 0.12316198261416204 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.293987321590871E-5 2 0.0 0.0 0.0 0.0 2.293987321590871E-5 3 0.0 1.1469936607954356E-5 0.0 0.0 2.293987321590871E-5 4 0.0 1.1469936607954356E-5 0.0 1.1469936607954356E-5 2.293987321590871E-5 5 0.0 4.587974643181742E-5 0.0 1.1469936607954356E-5 3.440980982386307E-5 6 0.0 4.587974643181742E-5 0.0 1.1469936607954356E-5 5.734968303977178E-5 7 0.0 4.587974643181742E-5 0.0 1.1469936607954356E-5 5.734968303977178E-5 8 0.0 4.587974643181742E-5 0.0 1.1469936607954356E-5 6.881961964772613E-5 9 0.0 4.587974643181742E-5 0.0 2.293987321590871E-5 8.028955625568049E-5 10-11 0.0 4.587974643181742E-5 0.0 3.440980982386307E-5 8.602452455965768E-5 12-13 0.0 5.734968303977178E-5 0.0 4.0144778127840245E-5 9.749446116761202E-5 14-15 0.0 5.734968303977178E-5 0.0 5.734968303977178E-5 2.0645885894317838E-4 16-17 0.0 6.881961964772613E-5 0.0 6.881961964772613E-5 2.9248338350283605E-4 18-19 0.0 6.881961964772613E-5 0.0 8.602452455965768E-5 3.4409809823863065E-4 20-21 0.0 9.175949286363485E-5 0.0 9.749446116761202E-5 3.6130300315056216E-4 22-23 0.0 9.175949286363485E-5 0.0 1.7778401742329252E-4 4.014477812784024E-4 24-25 0.0 9.175949286363485E-5 0.0 4.4159255940624267E-4 4.7600236923010575E-4 26-27 0.0 1.032294294715892E-4 0.0 9.003900237244168E-4 4.817373375340829E-4 28-29 0.0 1.032294294715892E-4 0.0 0.0032804018698749456 4.817373375340829E-4 30-31 0.0 1.032294294715892E-4 0.0 0.0133682111165708 4.874723058380601E-4 32-33 0.0 1.032294294715892E-4 0.0 0.03670379714545394 5.333520522698775E-4 34-35 0.0 1.2043433438352073E-4 0.0 0.06732852788869206 5.734968303977178E-4 36-37 0.0 1.319042709914751E-4 0.0 0.11928734072272529 5.734968303977178E-4 38-39 0.0 1.3763923929545227E-4 0.0 0.20553552904623806 6.136416085255579E-4 40-41 0.0 1.5484414420738378E-4 0.0 0.30687241897751477 6.48051418349421E-4 42-43 1.1469936607954356E-5 1.7778401742329252E-4 0.0 0.4127456688372375 6.652563232613526E-4 44-45 1.1469936607954356E-5 1.835189857272697E-4 0.0 0.5415358520396529 6.939311647812384E-4 46-47 1.1469936607954356E-5 1.9498892233522404E-4 0.0 0.692566242324892 7.398109112130559E-4 48-49 1.1469936607954356E-5 2.007238906392012E-4 0.0 0.8553991973797159 7.914256259488505E-4 50-51 1.1469936607954356E-5 2.1792879555113277E-4 1.1469936607954356E-5 1.0336592171722385 7.914256259488505E-4 52-53 1.1469936607954356E-5 2.2939873215908712E-4 1.1469936607954356E-5 1.2210779813462127 8.430403406846451E-4 54-55 1.1469936607954356E-5 2.4086866876704146E-4 1.1469936607954356E-5 1.4337592808992063 8.946550554204397E-4 56-57 1.1469936607954356E-5 2.4086866876704146E-4 1.1469936607954356E-5 1.6798754456643867 9.003900237244168E-4 58-59 1.7204904911931534E-5 2.6380854198295014E-4 1.1469936607954356E-5 1.948713554849925 9.175949286363485E-4 60-61 4.587974643181742E-5 2.7527847859090454E-4 1.1469936607954356E-5 2.2375494985114317 9.290648652443028E-4 62-63 4.587974643181742E-5 2.7527847859090454E-4 1.1469936607954356E-5 2.5415372284320457 9.405348018522572E-4 64-65 4.587974643181742E-5 3.0968828841476757E-4 1.1469936607954356E-5 2.8717968481531795 9.577397067641886E-4 66-67 4.587974643181742E-5 3.2115822502272196E-4 1.1469936607954356E-5 3.2479247443695227 9.806795799800973E-4 68-69 4.587974643181742E-5 3.2115822502272196E-4 1.1469936607954356E-5 3.6584337755682093 9.864145482840745E-4 70-71 4.587974643181742E-5 3.326281616306763E-4 1.1469936607954356E-5 4.10861731749381 0.0010150893898039604 72-73 4.587974643181742E-5 3.498330665426078E-4 1.1469936607954356E-5 4.573080930496314 0.0011699335340113442 74-75 4.587974643181742E-5 3.55568034846585E-4 1.7204904911931534E-5 5.061195552784419 0.0011699335340113442 76-77 4.587974643181742E-5 3.55568034846585E-4 2.293987321590871E-5 5.592786969784976 0.0011756685023153214 78-79 4.587974643181742E-5 3.55568034846585E-4 2.293987321590871E-5 6.175408134754321 0.0011814034706192987 80-81 4.587974643181742E-5 3.9571281297442524E-4 2.293987321590871E-5 6.7967231308706 0.0012043433438352073 82-83 4.587974643181742E-5 4.014477812784024E-4 2.293987321590871E-5 7.436080337271192 0.0012616930268749792 84-85 4.587974643181742E-5 4.129177178863568E-4 2.293987321590871E-5 8.09575080140447 0.0012616930268749792 86 4.587974643181742E-5 4.2438765449431115E-4 2.293987321590871E-5 8.60988497488772 0.0012616930268749792 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 13145 0.0 39.560234 1 GGTATCA 7790 0.0 34.617935 1 TCAACGC 16450 0.0 31.363937 4 CAACGCA 17020 0.0 30.096054 5 TATCAAC 17230 0.0 29.704626 2 ATCAACG 17415 0.0 29.415287 3 AACGCAG 18350 0.0 27.833609 6 GTACATG 27825 0.0 26.544884 1 TACATGG 29035 0.0 24.747944 2 ACATGGG 30415 0.0 22.914978 3 ACGCAGA 21990 0.0 22.637072 7 CGCAGAG 22990 0.0 21.211319 8 GAGTACA 21740 0.0 20.427197 1 CATGGGG 22425 0.0 20.32338 4 AGTACAT 20240 0.0 19.63495 2 GCAGAGT 25215 0.0 18.118568 9 AGAGTAC 20190 0.0 16.914654 10-11 GTATTAG 2015 0.0 16.215275 1 GTATAGG 2175 0.0 16.080343 1 GTATACG 535 0.0 15.483164 1 >>END_MODULE