FastQCFastQC Report
Mon 15 Aug 2016
SRR2921564_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2921564_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8544377
Sequences flagged as poor quality0
Sequence length101
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATCAA152250.039.830391
GGTATCA89600.038.355851
TCAACGC200850.029.4133284
TATCAAC204100.029.0366692
CAACGCA206800.028.5896845
ATCAACG212500.028.0466123
AACGCAG222100.026.4875626
GTACATG323950.025.2727741
TACATGG332300.024.1793842
ACATGGG354150.022.3400123
ACGCAGA266350.021.4274757
CGCAGAG277950.020.2598978
CATGGGG268650.020.1164344
GTATAGG21400.018.9063471
GAGTACA259300.018.577211
AGTACAT244400.018.1088122
GCAGAGT301350.017.5505189
GTATATA18450.017.0274661
AGAGTAC244450.016.79863710-11
ATGGGGG141900.015.4949125
Produced by FastQC (version 0.11.5)