##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921564_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8544377 Sequences flagged as poor quality 0 Sequence length 101 %GC 49 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.85691654289131 31.0 30.0 34.0 26.0 34.0 2 29.829045464637154 31.0 30.0 34.0 26.0 34.0 3 30.017434858035877 31.0 30.0 34.0 26.0 34.0 4 33.65391473246089 35.0 35.0 37.0 28.0 37.0 5 33.11490890441749 35.0 33.0 37.0 27.0 37.0 6 32.989294128758594 35.0 33.0 37.0 26.0 37.0 7 32.791801672608784 35.0 33.0 37.0 26.0 37.0 8 32.68097697468171 35.0 33.0 37.0 25.0 37.0 9 33.97114230797634 37.0 33.0 39.0 25.0 39.0 10-11 33.754340778736704 37.0 33.0 39.0 25.0 39.0 12-13 33.570477578412095 37.0 33.0 39.0 23.0 39.0 14-15 34.413476313135526 38.0 33.0 40.0 23.0 41.0 16-17 34.26559987931245 38.0 33.0 40.0 22.0 41.0 18-19 34.135961755900986 38.0 33.0 40.0 20.0 41.0 20-21 33.99180256208264 38.0 33.0 40.0 18.5 41.0 22-23 33.81729329124873 38.0 32.5 40.0 18.0 41.0 24-25 33.66035861947571 38.0 32.0 40.0 18.0 41.0 26-27 33.567006289633525 38.0 32.0 40.0 18.0 41.0 28-29 33.57130765648566 38.0 32.0 40.0 17.5 41.0 30-31 33.41357216564765 38.0 32.0 40.0 16.5 41.0 32-33 33.24074645816775 38.0 32.0 40.0 16.0 41.0 34-35 33.03594568685347 38.0 31.5 40.0 15.0 41.0 36-37 32.862581321025516 38.0 31.0 40.0 14.5 41.0 38-39 32.68311949484439 37.5 31.0 40.0 9.0 41.0 40-41 32.69287280980228 38.0 31.0 40.0 9.0 41.0 42-43 32.49178916145671 37.0 31.0 40.0 9.0 41.0 44-45 32.286391915993406 37.0 31.0 40.0 8.0 41.0 46-47 32.01486977927121 37.0 30.0 40.0 6.5 41.0 48-49 31.72513045714158 37.0 30.0 40.0 2.0 41.0 50-51 31.456889250088096 36.0 30.0 40.0 2.0 41.0 52-53 31.136445933975057 36.0 29.0 39.0 2.0 41.0 54-55 30.82021667583254 35.5 29.0 39.0 2.0 40.5 56-57 30.47855074746819 35.0 28.0 39.0 2.0 40.0 58-59 30.007906895962105 35.0 28.0 39.0 2.0 40.0 60-61 29.657027715420327 34.5 28.0 38.0 2.0 40.0 62-63 29.323330712116285 34.0 27.0 38.0 2.0 40.0 64-65 28.88211855586428 34.0 26.0 37.5 2.0 40.0 66-67 28.469792297320215 34.0 26.0 37.0 2.0 39.0 68-69 28.051713659170233 33.5 26.0 36.0 2.0 39.0 70-71 27.60276313884558 33.0 25.5 36.0 2.0 39.0 72-73 27.147061628952 33.0 24.5 35.0 2.0 38.0 74-75 26.635348077454914 32.0 23.5 35.0 2.0 37.0 76-77 25.14578107918225 30.5 21.0 34.0 2.0 35.5 78-79 26.028900117586105 32.0 23.0 35.0 2.0 36.0 80-81 26.101550469975752 32.0 23.0 35.0 2.0 36.0 82-83 25.806050692753843 32.0 22.0 35.0 2.0 35.5 84-85 25.41331117529107 32.0 20.0 35.0 2.0 35.0 86-87 25.004380717283425 32.0 18.5 34.0 2.0 35.0 88-89 24.589470888281262 31.0 17.0 34.0 2.0 35.0 90-91 24.196371602048927 31.0 11.0 34.0 2.0 35.0 92-93 23.813338994756435 31.0 6.5 34.0 2.0 35.0 94-95 23.45800249684676 31.0 2.0 34.0 2.0 35.0 96-97 22.963263910288603 31.0 2.0 34.0 2.0 35.0 98-99 22.24619811368342 31.0 2.0 34.0 2.0 35.0 100-101 19.706033687418053 26.5 2.0 32.5 2.0 34.5 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 271678.0 3 119555.0 4 60895.0 5 42784.0 6 36663.0 7 36273.0 8 40628.0 9 45794.0 10 51606.0 11 57171.0 12 62838.0 13 67226.0 14 71569.0 15 75528.0 16 78934.0 17 80984.0 18 79315.0 19 76914.0 20 77633.0 21 80760.0 22 86560.0 23 98801.0 24 113517.0 25 134193.0 26 159482.0 27 187806.0 28 221244.0 29 258670.0 30 303886.0 31 357908.0 32 427053.0 33 518149.0 34 648139.0 35 821400.0 36 1054358.0 37 1113823.0 38 501887.0 39 22753.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.7217616167551 18.629513918260496 13.423753757724432 25.224970707259963 2 16.317234129533375 20.356533893577026 37.46435813869168 25.86187383819792 3 19.976091856519773 23.630896558891592 28.203896624782942 28.189114959805693 4 14.590666268059357 15.824893557099678 34.57154435438843 35.012895820452535 5 15.394319351583032 36.490345547845706 33.01342237727759 15.101912723293665 6 34.66816038263623 33.73900875105576 16.74065145589857 14.852179410409436 7 30.50827434942887 30.81299636281386 19.845652516584735 18.83307677117253 8 27.629162618347763 33.66110211093971 19.454682212680126 19.25505305803241 9 27.40005891052092 15.744727168599615 18.79499865143179 38.06021526944768 10-11 26.54937396507689 24.793481153978046 26.636787489695074 22.020357391249988 12-13 26.9702132375406 21.915357498317753 26.747485534560546 24.3669437295811 14-15 24.48126114225985 23.482922861888618 24.06804291634226 27.967773079509268 16-17 24.605382659868884 26.44253137657672 24.768292152311446 24.18379381124295 18-19 24.58170844477448 25.915265880473402 26.01293781217918 23.490087862572935 20-21 25.201629075102915 25.024617043811837 25.864904567604803 23.90884931348044 22-23 25.113682104280127 24.71052022348193 25.562325611549547 24.613472060688395 24-25 24.81491306664793 24.925247272535618 25.601031839450002 24.658807821366455 26-27 24.529165079047623 25.144566033750188 25.75729135758349 24.568977529618707 28-29 24.5931119749477 25.308278300429087 25.59848868657091 24.500121038052303 30-31 25.028344775731053 25.087671390844733 25.351231415067087 24.532752418357124 32-33 24.81990275038299 25.117777340280757 25.310623374131197 24.751696535205056 34-35 25.01388948896165 25.119010527442292 25.468656824068386 24.398443159527673 36-37 25.01726765845283 24.946838910645056 25.468887393792706 24.56700603710941 38-39 24.977116380620448 25.089274800598147 25.383173298252533 24.550435520528872 40-41 24.996758860193413 24.915044092085477 25.50039833096079 24.58779871676032 42-43 24.830916002360894 24.8671851864383 25.34356651932847 24.95833229187234 44-45 24.616593447884732 24.942185841091245 25.532805643055216 24.908415067968804 46-47 24.763620641978754 24.798390920485172 25.45409164227869 24.983896795257383 48-49 24.585763937613457 24.90672483536768 25.49379747512477 25.01371375189409 50-51 24.552623856385463 25.00322779676738 25.52606063997114 24.918087706876022 52-53 24.65624433974714 24.93032420757923 25.42457858457321 24.988852868100416 54-55 24.319328885912547 24.799837385983192 25.641703214436173 25.23913051366809 56-57 24.450820110585678 24.8545050044941 25.47412213444708 25.22055275047314 58-59 24.446930880434774 24.754462007507765 25.611018333066472 25.187588778990992 60-61 24.684742292614317 24.796060335233726 25.533099688564697 24.986097683587257 62-63 24.446686633726383 24.811249833567192 25.54191546237594 25.20014807033048 64-65 24.2789256289039 24.591152840510876 25.60752416778964 25.52239736279558 66-67 24.266645119491674 24.741274345599706 25.423131185115118 25.568949349793503 68-69 24.149500468855816 24.670793644175095 25.4457585473364 25.73394733963269 70-71 24.087881365308146 24.45478934357664 25.58297327815967 25.874356012955545 72-73 24.01107208153189 24.610977675150945 25.384713028373323 25.993237214943843 74-75 23.733644951461397 24.654635763624928 25.519791741983 26.091927542930677 76-77 23.686224741159347 24.319977299536326 25.759788695187858 26.23400926411647 78-79 23.546209352178348 24.284707211994004 25.83003117260035 26.339052263227302 80-81 23.538506928741615 24.457633537814548 25.65918430425185 26.34467522919199 82-83 23.39917168370179 24.329062569442613 25.791441667972244 26.480324078883356 84-85 23.351457317210222 24.251879359495927 25.65864210364643 26.73802121964742 86-87 23.034976621792435 24.34217244803289 25.89475767481599 26.728093255358687 88-89 22.926167179257927 24.129516650575678 25.913304863982432 27.03101130618396 90-91 22.942191311532454 23.947683292442264 25.980496690082454 27.129628705942828 92-93 22.978423976199988 23.826214648566086 25.9548985361715 27.24046283906243 94-95 22.678893827650608 23.873007684041177 26.016472925148538 27.431625563159674 96-97 22.462243546411433 23.6951098451223 26.176104846158427 27.666541762307844 98-99 22.21912062120504 23.60629704594741 26.192283228373398 27.98229910447415 100-101 22.37235474575936 23.442488371573138 26.28922183729671 27.89593504537079 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 235.0 1 199.0 2 237.0 3 311.0 4 298.0 5 332.0 6 552.0 7 1138.0 8 1669.5 9 1686.0 10 1397.5 11 1169.5 12 1188.0 13 1285.0 14 1380.5 15 1461.0 16 1568.5 17 1741.5 18 1916.0 19 2093.0 20 2307.0 21 2517.0 22 2801.5 23 3230.5 24 3643.5 25 4169.0 26 4913.0 27 5836.5 28 6952.5 29 8822.0 30 11913.0 31 17316.0 32 27355.0 33 41559.5 34 59064.0 35 79780.0 36 105185.0 37 131734.0 38 153328.5 39 173931.0 40 194872.0 41 214109.0 42 232948.5 43 256357.5 44 281332.5 45 302687.0 46 325886.5 47 349533.0 48 371459.5 49 390107.5 50 401099.5 51 407252.0 52 409414.5 53 410105.0 54 407510.5 55 393933.5 56 369023.0 57 338395.0 58 308189.5 59 275027.0 60 237462.0 61 197319.5 62 158446.5 63 122214.5 64 88850.5 65 63247.0 66 45969.5 67 34283.5 68 25137.0 69 18174.5 70 13176.0 71 9526.0 72 7014.5 73 5351.0 74 3949.5 75 2690.0 76 1795.0 77 1061.5 78 573.0 79 337.5 80 196.5 81 112.0 82 64.5 83 35.0 84 17.5 85 8.5 86 6.5 87 6.0 88 3.5 89 1.5 90 1.0 91 1.0 92 1.0 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.24500323429080903 2 0.0 3 9.362882747331959E-5 4 0.015202980860980268 5 0.017309629479129958 6 0.1060814615272711 7 0.13672149531791494 8 0.1528256536433259 9 0.11000216867771634 10-11 0.11971030772635619 12-13 0.09560673645369346 14-15 0.11873890864132047 16-17 0.07256819309353976 18-19 0.07738422590669863 20-21 0.0533918388666605 22-23 0.08032768217039112 24-25 0.07287833858454514 26-27 0.05073512088710505 28-29 0.018831097925571402 30-31 0.03135980540184498 32-33 0.0394001809611163 34-35 0.0438416984643819 36-37 0.036521094516311726 38-39 0.03900811024607177 40-41 0.02173944337896139 42-43 0.03148854503962079 44-45 0.01740325830660328 46-47 0.0304176653253947 48-49 3.979225167616082E-4 50-51 0.016361637600962597 52-53 0.008186670602198381 54-55 0.016946817772670843 56-57 0.01118864488306169 58-59 0.00806378276613965 60-61 0.03083899504902464 62-63 0.013336256113230957 64-65 0.014506616456647452 66-67 0.058219575283253534 68-69 0.07690437816589787 70-71 0.033495713028580086 72-73 0.05500693614057526 74-75 0.04692559796928436 76-77 0.22752975436360076 78-79 0.08088945513523103 80-81 0.016098306523693887 82-83 0.0105507984958997 84-85 0.024636085228917217 86-87 0.17883106047404043 88-89 0.3848671471307972 90-91 0.27821806083696915 92-93 0.27945279099927356 94-95 0.002048130600978866 96-97 0.005927875139404546 98-99 0.004710700382251391 100-101 0.005196399924769237 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 8544377.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.596737425849966 #Duplication Level Percentage of deduplicated Percentage of total 1 70.92958220096743 30.922983709408186 2 13.268821300195476 11.569546363502948 3 5.646857640897411 7.385537095540771 4 3.015153516482809 5.258034246269169 5 1.7413484850265806 3.795855633430273 6 1.0940940170969284 2.8619357749540915 7 0.7769794821529015 2.371163932808505 8 0.5756271460335639 2.0076372432653344 9 0.4180135732879123 1.6401625195566958 >10 2.2433964291178503 18.077018840080978 >50 0.19033925885264075 5.733807485095296 >100 0.09664746033088446 7.357223992209809 >500 0.0029230520329366332 0.8172223959220002 >1k 2.1643752480177592E-4 0.20187076795594455 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.3407206868329898E-5 2 0.0 0.0 0.0 0.0 2.3407206868329898E-5 3 0.0 0.0 0.0 0.0 2.3407206868329898E-5 4 0.0 0.0 0.0 0.0 2.3407206868329898E-5 5 0.0 0.0 0.0 0.0 2.3407206868329898E-5 6 0.0 0.0 0.0 0.0 2.3407206868329898E-5 7 0.0 0.0 0.0 0.0 2.3407206868329898E-5 8 0.0 0.0 0.0 0.0 2.3407206868329898E-5 9 0.0 0.0 0.0 0.0 2.3407206868329898E-5 10-11 0.0 0.0 0.0 0.0 2.3407206868329898E-5 12-13 0.0 0.0 0.0 1.1703603434164949E-5 7.607342232207216E-5 14-15 0.0 0.0 0.0 3.511081030249484E-5 1.0533243090748454E-4 16-17 0.0 0.0 0.0 3.511081030249484E-5 1.1703603434164949E-4 18-19 5.8518017170824746E-6 0.0 0.0 4.0962612019577316E-5 1.1703603434164949E-4 20-21 1.1703603434164949E-5 5.8518017170824746E-6 0.0 9.948062919040205E-5 1.2873963777581442E-4 22-23 1.1703603434164949E-5 1.1703603434164949E-5 0.0 3.3940449959078353E-4 1.2873963777581442E-4 24-25 1.1703603434164949E-5 1.1703603434164949E-5 0.0 7.958450335232164E-4 1.2873963777581442E-4 26-27 1.1703603434164949E-5 1.1703603434164949E-5 0.0 0.0019427981700713814 1.4629504292706187E-4 28-29 1.1703603434164949E-5 1.1703603434164949E-5 0.0 0.005594322441530845 1.5214684464414434E-4 30-31 1.1703603434164949E-5 1.1703603434164949E-5 0.0 0.021253743836443545 1.5214684464414434E-4 32-33 1.1703603434164949E-5 1.1703603434164949E-5 0.0 0.05824883429183895 1.638504480783093E-4 34-35 1.1703603434164949E-5 1.1703603434164949E-5 0.0 0.10886106734288527 1.7555405151247424E-4 36-37 1.1703603434164949E-5 2.3407206868329898E-5 0.0 0.18953985761630135 1.7555405151247424E-4 38-39 1.1703603434164949E-5 2.3407206868329898E-5 0.0 0.31892904538271194 1.814058532295567E-4 40-41 1.1703603434164949E-5 2.3407206868329898E-5 0.0 0.47068381931181175 1.8725765494663919E-4 42-43 1.1703603434164949E-5 2.3407206868329898E-5 0.0 0.6305082278087683 1.8725765494663919E-4 44-45 1.1703603434164949E-5 2.3407206868329898E-5 0.0 0.8216924417075697 1.8725765494663919E-4 46-47 1.1703603434164949E-5 2.3407206868329898E-5 0.0 1.042796917785814 1.8725765494663919E-4 48-49 1.7555405151247424E-5 2.3407206868329898E-5 0.0 1.278571860768784 1.8725765494663919E-4 50-51 2.3407206868329898E-5 2.3407206868329898E-5 0.0 1.5274314323911504 1.8725765494663919E-4 52-53 2.3407206868329898E-5 2.3407206868329898E-5 0.0 1.7866252858458842 2.1066486181496908E-4 54-55 2.3407206868329898E-5 2.3407206868329898E-5 0.0 2.0804032874485756 2.3407206868329898E-4 56-57 2.3407206868329898E-5 2.925900858541237E-5 0.0 2.414459240269946 2.3407206868329898E-4 58-59 2.3407206868329898E-5 3.511081030249484E-5 0.0 2.776258585032004 2.3407206868329898E-4 60-61 2.3407206868329898E-5 3.511081030249484E-5 0.0 3.1643266677020456 2.5747927555162884E-4 62-63 2.3407206868329898E-5 3.511081030249484E-5 0.0 3.5677849888880138 2.8088648241995874E-4 64-65 2.3407206868329898E-5 3.511081030249484E-5 0.0 4.007021225772224 2.8088648241995874E-4 66-67 2.3407206868329898E-5 3.511081030249484E-5 0.0 4.499438636661281 2.8088648241995874E-4 68-69 2.3407206868329898E-5 3.511081030249484E-5 0.0 5.040039782888794 2.8088648241995874E-4 70-71 2.3407206868329898E-5 3.511081030249484E-5 0.0 5.628099041041846 2.867382841370412E-4 72-73 2.3407206868329898E-5 3.511081030249484E-5 0.0 6.233678593535842 3.0429368928828863E-4 74-75 2.3407206868329898E-5 3.511081030249484E-5 0.0 6.878096554026116 3.1599729272245363E-4 76-77 2.3407206868329898E-5 3.511081030249484E-5 0.0 7.574724289436199 3.1599729272245363E-4 78-79 2.3407206868329898E-5 3.511081030249484E-5 0.0 8.333568380702303 3.218490944395361E-4 80-81 2.3407206868329898E-5 3.511081030249484E-5 0.0 9.136862757811365 3.277008961566186E-4 82-83 2.3407206868329898E-5 3.511081030249484E-5 0.0 9.962598794505439 3.277008961566186E-4 84-85 2.3407206868329898E-5 3.511081030249484E-5 0.0 10.8095007980102 3.277008961566186E-4 86-87 2.3407206868329898E-5 3.511081030249484E-5 0.0 11.705792008007137 3.335526978737011E-4 88-89 2.3407206868329898E-5 4.0962612019577316E-5 0.0 12.65281833889118 3.3940449959078353E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 15225 0.0 39.83039 1 GGTATCA 8960 0.0 38.35585 1 TCAACGC 20085 0.0 29.413328 4 TATCAAC 20410 0.0 29.036669 2 CAACGCA 20680 0.0 28.589684 5 ATCAACG 21250 0.0 28.046612 3 AACGCAG 22210 0.0 26.487562 6 GTACATG 32395 0.0 25.272774 1 TACATGG 33230 0.0 24.179384 2 ACATGGG 35415 0.0 22.340012 3 ACGCAGA 26635 0.0 21.427475 7 CGCAGAG 27795 0.0 20.259897 8 CATGGGG 26865 0.0 20.116434 4 GTATAGG 2140 0.0 18.906347 1 GAGTACA 25930 0.0 18.57721 1 AGTACAT 24440 0.0 18.108812 2 GCAGAGT 30135 0.0 17.550518 9 GTATATA 1845 0.0 17.027466 1 AGAGTAC 24445 0.0 16.798637 10-11 ATGGGGG 14190 0.0 15.494912 5 >>END_MODULE