##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921563_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6316348 Sequences flagged as poor quality 0 Sequence length 98 %GC 49 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.150863125337615 31.0 28.0 31.0 16.0 34.0 2 28.12290725590167 31.0 28.0 33.0 16.0 34.0 3 28.215255872539004 31.0 28.0 34.0 16.0 34.0 4 31.63917298413577 35.0 32.0 37.0 18.0 37.0 5 31.577003831961125 35.0 32.0 37.0 17.0 37.0 6 31.67173705438649 35.0 32.0 37.0 18.0 37.0 7 31.479946956690796 35.0 32.0 37.0 17.0 37.0 8 31.432567838250836 35.0 32.0 37.0 17.0 37.0 9 32.67221850347701 37.0 32.0 39.0 17.0 39.0 10-11 32.444453187189815 37.0 32.0 39.0 17.0 39.0 12-13 32.254522075097825 37.0 32.0 39.0 15.0 39.0 14-15 32.96364837719518 38.0 32.0 40.0 11.0 41.0 16-17 32.82144896069691 38.0 32.0 40.0 10.5 41.0 18-19 32.646307090742944 38.0 31.0 40.0 10.0 41.0 20-21 32.51909695285947 38.0 31.0 40.0 10.0 41.0 22-23 32.29761398516991 37.0 31.0 40.0 9.5 41.0 24-25 32.39506143423384 38.0 31.0 40.0 8.5 41.0 26-27 32.151885234949056 37.0 30.5 40.0 8.0 41.0 28-29 31.958416714848518 37.0 30.0 40.0 5.0 41.0 30-31 31.705918594098996 37.0 30.0 40.0 2.0 41.0 32-33 31.461440534942028 37.0 30.0 40.0 2.0 41.0 34-35 31.119986105895368 36.5 29.5 40.0 2.0 41.0 36-37 30.815612518499613 36.0 29.0 40.0 2.0 41.0 38-39 30.593378721375075 36.0 28.5 39.0 2.0 41.0 40-41 30.366652771506573 36.0 28.0 39.0 2.0 40.0 42-43 30.112385828013274 35.5 27.5 39.0 2.0 40.0 44-45 29.84609769759361 35.0 27.0 39.0 2.0 40.0 46-47 29.544082751615335 35.0 26.0 39.0 2.0 40.0 48-49 29.251348247436653 35.0 26.0 39.0 2.0 40.0 50-51 28.31171073854702 34.0 25.0 38.0 2.0 39.5 52-53 28.511342709426394 34.0 25.0 38.0 2.0 39.5 54-55 29.08481522867328 35.0 26.0 39.0 2.0 40.0 56-57 29.063768335753508 35.0 26.0 39.0 2.0 40.0 58-59 28.822310376185733 34.5 26.0 39.0 2.0 40.0 60-61 28.47458982627303 34.0 26.0 38.0 2.0 40.0 62-63 28.051362432848855 34.0 24.5 38.0 2.0 40.0 64-65 27.586903381510965 34.0 23.0 37.5 2.0 40.0 66-67 27.23572735384434 33.0 22.5 37.0 2.0 39.5 68-69 26.77627847610676 33.0 21.5 36.0 2.0 39.0 70-71 26.349205981051078 33.0 20.5 36.0 2.0 39.0 72-73 25.87235353403581 32.0 19.0 35.0 2.0 38.5 74-75 25.420977042430216 32.0 18.0 35.0 2.0 37.0 76-77 24.98700419926198 32.0 14.0 35.0 2.0 37.0 78-79 24.58187230975874 31.0 8.5 35.0 2.0 36.0 80-81 24.13287369536954 31.0 6.0 34.5 2.0 36.0 82-83 23.58906744846864 31.0 2.0 34.0 2.0 35.0 84-85 23.164825386441656 30.5 2.0 34.0 2.0 35.0 86-87 22.66019343772699 30.0 2.0 34.0 2.0 35.0 88-89 22.136553828256453 30.0 2.0 34.0 2.0 35.0 90-91 21.536013373550666 29.0 2.0 34.0 2.0 35.0 92-93 20.98873510452559 29.0 2.0 34.0 2.0 35.0 94-95 20.304808173963814 29.0 2.0 34.0 2.0 35.0 96-97 19.65882262978544 27.0 2.0 34.0 2.0 35.0 98 19.177219652875365 27.0 2.0 33.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 387749.0 3 65317.0 4 47655.0 5 38787.0 6 35820.0 7 38028.0 8 42292.0 9 48936.0 10 51181.0 11 53979.0 12 53864.0 13 52602.0 14 52198.0 15 54261.0 16 58573.0 17 61584.0 18 64746.0 19 64668.0 20 66801.0 21 70918.0 22 77694.0 23 86359.0 24 96889.0 25 111835.0 26 127979.0 27 147459.0 28 169600.0 29 194141.0 30 225569.0 31 262386.0 32 308692.0 33 370855.0 34 455514.0 35 561684.0 36 681635.0 37 680523.0 38 325805.0 39 21769.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.45159964528555 17.41200743985608 12.956335947107908 25.18005696775046 2 16.369833256166476 19.509900613317942 38.6351773040649 25.485088826450685 3 19.796060842118315 23.33411713333421 28.36379820706939 28.50602381747808 4 14.112380657028856 15.333025116207684 35.05121572947415 35.503378497289305 5 15.256037383622074 36.30815329187524 33.13103688818603 15.304772436316652 6 34.291030012313605 33.50730880728464 17.145340771971483 15.056320408430274 7 30.15616662651673 30.878770471122692 20.245340667071808 18.719722235288767 8 27.34867325355553 33.45570666123653 19.741221976719032 19.454398108488906 9 27.634919840726475 15.653811246808736 18.767460522040714 37.94380839042408 10-11 26.37358470521805 24.58916286870651 26.881618031165637 22.155634394909804 12-13 27.020614036962677 21.943253410142184 26.76544216149016 24.270690391404983 14-15 24.436308505921843 23.36604598137944 24.197075495598202 28.00057001710051 16-17 24.57830218889171 26.263613034947298 24.855453348253427 24.302631427907567 18-19 24.561091013031145 25.778937770119235 26.127761800778813 23.532209416070806 20-21 25.27303407423725 25.023611434122735 25.815683031899113 23.88767145974091 22-23 25.13610926395609 24.641236360547474 25.609880754433757 24.61277362106268 24-25 24.75413623110608 24.90343697505887 25.617016260360977 24.725410533474072 26-27 24.594554123625578 25.0869616199454 25.697261691409846 24.62122256501918 28-29 24.68055698195885 25.34616430644468 25.466489348888103 24.506789362708368 30-31 25.090651594207586 25.06537871644996 25.29961630384242 24.544353385500038 32-33 24.744643764145493 25.061463249327687 25.3102299661003 24.883663020426518 34-35 25.000921254939833 25.10995495381018 25.428661511874655 24.460462279375324 36-37 25.011582859339725 24.97366231091797 25.416521847800748 24.59823298194155 38-39 25.00529090521408 25.03800987895251 25.32927788660702 24.627421329226387 40-41 25.06326005543028 24.882807672822274 25.348962420654235 24.70496985109321 42-43 24.839640750789947 24.841118514850297 25.257395116688937 25.06184561767082 44-45 24.719198766340504 24.90620497268742 25.435195343321453 24.939400917650623 46-47 24.860894065639634 24.767084347241966 25.349770674997824 25.022250912120576 48-49 24.72819369626706 24.89700623840665 25.298567524063653 25.076232541262637 50-51 24.707652241066054 24.92809017628124 25.440528345668547 24.923729236984165 52-53 24.65719392470815 24.892905139329415 25.48842583946142 24.961475096501008 54-55 24.30094556533078 24.67452313494301 25.784011884427994 25.240519415298223 56-57 24.48241008645474 24.78603211548188 25.58060880443503 25.150948993628354 58-59 24.561464267779527 24.72501608908276 25.65455281722977 25.05896682590794 60-61 24.75219028532217 24.57863729243667 25.718548475121633 24.95062394711952 62-63 24.497224469031448 24.633788631945002 25.77603095973363 25.09295593928992 64-65 24.34348670224684 24.4904511634958 25.881008126784316 25.285054007473047 66-67 24.394754177258505 24.683409052058565 25.612521400569793 25.309315370113133 68-69 24.289805360181376 24.63311403055834 25.677180066060924 25.39990054319936 70-71 24.288343806279862 24.48005817188837 25.734881904665546 25.49671611716623 72-73 24.27626341890651 24.690152739007306 25.619100971477415 25.41448287060877 74-75 24.164181519460364 24.695395132451292 25.722762212339678 25.41766113574866 76-77 24.16918860762579 24.40913855017103 25.74327356921451 25.67839927298867 78-79 24.16229921264344 24.449318080076583 25.8703981342662 25.51798457301378 80-81 24.269786988835808 24.591694661370926 25.67841291721028 25.460105432582985 82-83 24.220480140991224 24.56186584697043 25.77005125906971 25.447602752968635 84-85 24.21232859038705 24.58288259927695 25.663985353144593 25.540803457191412 86-87 24.078002776796854 24.617205978369945 25.81389776662204 25.490893478211163 88-89 24.054061952214045 24.330467289957117 25.915491928760847 25.699978829067994 90-91 24.23380438963026 24.25106526771511 25.873603687063294 25.641526655591335 92-93 24.28362421402434 24.304733609197697 25.838987314277613 25.572654862500354 94-95 24.266244865913478 24.200746753123013 25.903435661463448 25.629572719500064 96-97 24.144006517166716 24.10741891455191 25.932082674642682 25.816491893638695 98 24.14305040185008 24.07033611026021 25.86529451193688 25.921318975952833 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 322.0 1 284.0 2 362.5 3 506.5 4 519.5 5 594.5 6 850.5 7 1458.0 8 2117.5 9 2332.0 10 2224.0 11 2240.0 12 2486.0 13 2781.0 14 3069.5 15 3346.0 16 3521.0 17 3539.0 18 3510.0 19 3482.5 20 3416.5 21 3397.0 22 3532.0 23 3808.5 24 4170.5 25 4634.0 26 5394.0 27 6402.5 28 7864.0 29 10284.0 30 14367.0 31 20505.5 32 29302.0 33 40197.5 34 53133.5 35 68705.0 36 86040.0 37 104406.0 38 121712.5 39 137272.0 40 153189.5 41 169619.5 42 189014.5 43 210437.5 44 230291.5 45 250043.5 46 268802.0 47 285442.0 48 297712.0 49 304007.5 50 305925.0 51 306256.5 52 307359.5 53 307272.5 54 301834.0 55 288954.5 56 268181.5 57 243998.5 58 220111.0 59 194477.5 60 166755.0 61 138904.5 62 112809.0 63 87061.0 64 64592.0 65 47926.0 66 35538.0 67 26822.0 68 20031.0 69 14807.0 70 10661.5 71 7574.0 72 5521.0 73 3967.5 74 2831.5 75 1972.5 76 1318.0 77 832.5 78 512.0 79 312.5 80 192.5 81 109.0 82 66.5 83 50.0 84 40.0 85 30.0 86 21.5 87 17.0 88 19.0 89 19.5 90 14.5 91 15.5 92 13.5 93 11.0 94 11.5 95 13.5 96 10.5 97 4.5 98 3.5 99 2.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.30796276582607546 2 0.15306313078380102 3 0.14988091219799796 4 0.1441655842901626 5 0.1388935505136829 6 0.047590791387681616 7 0.039817312155695034 8 0.015420302997871555 9 0.010639059152535612 10-11 0.0020344034242571816 12-13 0.006475260704445037 14-15 0.011842286080500948 16-17 0.0076072439327282155 18-19 0.05192082513503055 20-21 0.10093649051635532 22-23 0.10043778461858023 24-25 0.07798810325206908 26-27 0.08736060774358854 28-29 0.1072138520550166 30-31 0.08287225466361259 32-33 0.022093462868100367 34-35 0.3259478420125047 36-37 0.4255940299679498 38-39 0.39408056680854187 40-41 0.3904233902248578 42-43 0.3650289692714841 44-45 0.34679058215285163 46-47 0.3518488848302848 48-49 0.34500948966079764 50-51 0.34565068295793705 52-53 0.3952125500368251 54-55 0.3812408689324907 56-57 0.3640869692423533 58-59 0.343663775333468 60-61 0.3531312714245637 62-63 0.35205469996269995 64-65 0.369359003018833 66-67 0.39186409615176365 68-69 0.35080397723494655 70-71 0.32492668231706046 72-73 0.308651454923003 74-75 0.2944581267529908 76-77 0.297394950373222 78-79 0.30398895057713726 80-81 0.2941494040543681 82-83 0.3042660094092346 84-85 0.29685666464229016 86-87 0.29200417709727206 88-89 0.3163061946555193 90-91 0.29874858066718296 92-93 0.2882124290808549 94-95 0.30428975730912866 96-97 0.3029123791152736 98 0.30237409338434174 >>END_MODULE >>Sequence Length Distribution pass #Length Count 98 6316348.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 55.765695480836165 #Duplication Level Percentage of deduplicated Percentage of total 1 78.78897488441937 43.937219806517795 2 11.022890610157337 12.293983221692047 3 3.843851664646346 6.430651842125198 4 1.9169082248190514 4.275908813198778 5 1.0440996057100693 2.9112470331844413 6 0.6816001745170377 2.2805944663081146 7 0.4788718493142695 1.8693235206243088 8 0.3269551036192023 1.4586302995466938 9 0.25861317822573915 1.2979569369841002 >10 1.4909150751752278 15.42404810795945 >50 0.10747083049394686 4.079831054155073 >100 0.03816181745324878 3.3509484747756724 >500 6.011108075230174E-4 0.2323018424999069 >1k 8.587064150106553E-5 0.15735458042859465 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 9.499159957621081E-5 2 0.0 0.0 0.0 0.0 9.499159957621081E-5 3 0.0 0.0 0.0 0.0 9.499159957621081E-5 4 0.0 0.0 0.0 1.58319332627018E-5 1.108235328389126E-4 5 0.0 3.16638665254036E-5 0.0 1.58319332627018E-5 1.266554661016144E-4 6 0.0 3.16638665254036E-5 0.0 1.58319332627018E-5 2.216470656778252E-4 7 0.0 3.16638665254036E-5 0.0 1.58319332627018E-5 2.216470656778252E-4 8 0.0 3.16638665254036E-5 0.0 1.58319332627018E-5 2.216470656778252E-4 9 0.0 3.16638665254036E-5 0.0 3.16638665254036E-5 2.3747899894052704E-4 10-11 0.0 3.16638665254036E-5 0.0 7.12436996821581E-5 2.3747899894052704E-4 12-13 0.0 6.332773305080722E-5 0.0 9.499159957621081E-5 3.5621849841079055E-4 14-15 0.0 8.707563294485991E-5 0.0 1.0290756620756171E-4 4.432941313556504E-4 16-17 0.0 9.499159957621081E-5 0.0 1.424873993643162E-4 4.907899311437559E-4 18-19 0.0 1.108235328389126E-4 0.0 2.0581513241512342E-4 6.016134639826684E-4 20-21 0.0 1.266554661016144E-4 0.0 2.3747899894052704E-4 6.807731302961775E-4 22-23 0.0 1.266554661016144E-4 0.0 4.3537816472429957E-4 7.599327966096865E-4 24-25 0.0 1.266554661016144E-4 0.0 9.103361626053536E-4 8.390924629231955E-4 26-27 0.0 1.4248739936431623E-4 0.0 0.0020185714909944797 8.945042293426518E-4 28-29 0.0 1.4248739936431623E-4 0.0 0.006435680871288282 9.182521292367045E-4 30-31 0.0 1.4248739936431623E-4 0.0 0.024586992356975895 9.578319623934591E-4 32-33 0.0 1.5831933262701802E-4 0.0 0.06590042220599625 0.0010765714618637225 34-35 0.0 1.7415126588971982E-4 0.0 0.12182672645649037 0.0011398991949145298 36-37 0.0 1.820672325210707E-4 0.0 0.20762788877370278 0.0011557311281772315 38-39 0.0 2.1373109904647433E-4 0.0 0.3445741114960733 0.0011715630614399333 40-41 0.0 2.453949655718779E-4 0.0 0.4990700322401489 0.0011794790280712842 42-43 0.0 2.8497479872863245E-4 0.0 0.6578089110986285 0.001203226927965337 44-45 0.0 2.9289076535998337E-4 0.0 0.8476812867182112 0.0012586386943847934 46-47 0.0 3.008067319913342E-4 0.0 1.0687663187652106 0.0013536302939610042 48-49 7.9159666313509E-6 3.008067319913342E-4 0.0 1.303166006686142 0.0014961176933253203 50-51 1.58319332627018E-5 3.0872269862268514E-4 0.0 1.5566510901552606 0.0015673613930074783 52-53 1.58319332627018E-5 3.245546318853869E-4 0.0 1.8148620057032956 0.0016702689592150402 54-55 1.58319332627018E-5 3.7996639830484324E-4 0.0 2.1013408380918848 0.0017969244253166544 56-57 1.58319332627018E-5 3.7996639830484324E-4 0.0 2.4282227641668888 0.0018048403919480053 58-59 1.58319332627018E-5 4.037142981988959E-4 0.0 2.7820031448552234 0.001820672325210707 60-61 1.58319332627018E-5 4.1163026483024683E-4 0.0 3.1628244675562525 0.0018681681249988126 62-63 1.58319332627018E-5 4.2746219809294866E-4 0.0 3.5616941941767615 0.0019473277913123217 64-65 1.58319332627018E-5 4.3537816472429957E-4 0.0 3.99167366965848 0.0019869076244690763 66-67 3.16638665254036E-5 4.432941313556504E-4 0.0 4.468175281032647 0.0020344034242571816 68-69 3.16638665254036E-5 4.432941313556504E-4 0.0 5.0007694319565665 0.0020581513241512343 70-71 3.16638665254036E-5 4.74957997881054E-4 0.0 5.578239197713615 0.002153142923727445 72-73 3.16638665254036E-5 5.066218644064576E-4 0.0 6.183019048348824 0.002414369822562025 74-75 3.16638665254036E-5 5.066218644064576E-4 0.0 6.809749874452769 0.0024460336890874284 76-77 3.16638665254036E-5 5.145378310378085E-4 0.0 7.484981828107001 0.002477697555612832 78-79 3.16638665254036E-5 5.382857309318613E-4 0.0 8.220573027325283 0.0025014454555068845 80-81 3.16638665254036E-5 5.382857309318613E-4 0.0 8.999678295116102 0.0025014454555068845 82-83 5.54117664194563E-5 5.382857309318613E-4 0.0 9.808769244506477 0.002564773188557692 84-85 6.33277330508072E-5 5.382857309318613E-4 0.0 10.640183219797262 0.002564773188557692 86 6.33277330508072E-5 5.382857309318613E-4 0.0 11.282310600999185 0.002564773188557692 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 11505 0.0 45.640224 1 GGTATCA 5915 0.0 42.94702 1 TCAACGC 14940 0.0 34.872833 4 TATCAAC 15160 0.0 34.24662 2 CAACGCA 15200 0.0 34.154335 5 ATCAACG 15355 0.0 33.781254 3 AACGCAG 16185 0.0 32.03813 6 ACGCAGA 18930 0.0 26.877966 7 GTACATG 22510 0.0 25.310102 1 CGCAGAG 19910 0.0 25.113392 8 TACATGG 23125 0.0 24.139767 2 ACATGGG 24110 0.0 22.82923 3 GCAGAGT 21485 0.0 21.838957 9 CATGGGG 18485 0.0 20.405556 4 GTATATA 1200 0.0 18.791592 1 AGAGTAC 18225 0.0 18.661531 10-11 GAGTACA 17665 0.0 17.376444 1 CAGAGTA 19640 0.0 17.281998 10-11 AGTACAT 16900 0.0 17.154623 2 ATGGGGG 10595 0.0 16.99793 5 >>END_MODULE