Basic Statistics
Measure | Value |
---|---|
Filename | SRR2921519_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1715541 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2301 | 0.1341267856611996 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1869 | 0.10894522485909693 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2095 | 0.0 | 71.85785 | 1 |
GTATCAA | 4075 | 0.0 | 60.45197 | 1 |
TCAACGC | 5480 | 0.0 | 44.62193 | 4 |
CAACGCA | 5610 | 0.0 | 43.692684 | 5 |
AACGCAG | 5860 | 0.0 | 41.82988 | 6 |
ATCAACG | 5950 | 0.0 | 41.19596 | 3 |
TATCAAC | 6145 | 0.0 | 40.176796 | 2 |
GTACATG | 9640 | 0.0 | 36.97324 | 1 |
ACGCAGA | 6995 | 0.0 | 34.87149 | 7 |
TACATGG | 10040 | 0.0 | 34.6634 | 2 |
ACATGGG | 10075 | 0.0 | 34.013535 | 3 |
CGCAGAG | 7440 | 0.0 | 32.621075 | 8 |
CATGGGG | 8775 | 0.0 | 30.375116 | 4 |
GCAGAGT | 7960 | 0.0 | 29.819214 | 9 |
GTATAGG | 525 | 0.0 | 29.468077 | 1 |
AGAGTAC | 7470 | 0.0 | 26.400105 | 10-11 |
CAGAGTA | 7840 | 0.0 | 24.850662 | 10-11 |
CATGGGT | 1745 | 0.0 | 24.548452 | 4 |
ATGGGGG | 4880 | 0.0 | 24.504768 | 5 |
ATGGGGA | 3205 | 0.0 | 23.94617 | 5 |