##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921474_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3865697 Sequences flagged as poor quality 0 Sequence length 98 %GC 50 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.18095650021199 31.0 31.0 34.0 27.0 34.0 2 30.26820053408221 31.0 31.0 34.0 26.0 34.0 3 30.404899814962217 31.0 31.0 34.0 26.0 34.0 4 33.915496998342086 37.0 35.0 37.0 30.0 37.0 5 33.88952729611245 37.0 35.0 37.0 30.0 37.0 6 33.98774089122867 37.0 35.0 37.0 30.0 37.0 7 33.863098427010705 37.0 35.0 37.0 30.0 37.0 8 33.83834506429242 37.0 35.0 37.0 30.0 37.0 9 35.264567554052995 39.0 35.0 39.0 30.0 39.0 10-11 35.129121087348544 39.0 35.0 39.0 29.0 39.0 12-13 34.95448453409566 39.0 35.0 39.0 28.0 39.0 14-15 35.93487940208454 39.5 36.0 41.0 27.0 41.0 16-17 35.77792555909064 39.0 36.0 41.0 27.0 41.0 18-19 35.575368555786966 39.0 36.0 40.5 27.0 41.0 20-21 35.45027235709369 39.0 36.0 40.0 27.0 41.0 22-23 35.48248452995669 39.0 36.0 40.5 27.0 41.0 24-25 35.33319165987402 39.0 35.5 41.0 26.0 41.0 26-27 35.046434575705234 39.0 35.0 40.0 24.5 41.0 28-29 34.79529629456215 39.0 34.5 40.0 24.0 41.0 30-31 34.51855331651704 38.0 34.0 40.0 23.5 41.0 32-33 34.230225622960106 38.0 34.0 40.0 21.5 41.0 34-35 33.79553842424794 38.0 33.0 40.0 17.5 41.0 36-37 33.395326121007415 38.0 33.0 40.0 15.5 41.0 38-39 33.13388607539598 38.0 32.5 40.0 14.0 41.0 40-41 32.84432496908061 38.0 32.0 40.0 9.0 41.0 42-43 32.5315906808009 37.5 31.0 40.0 9.0 41.0 44-45 32.188682920570336 37.0 31.0 40.0 8.0 41.0 46-47 31.87943131600847 37.0 30.5 40.0 7.0 41.0 48-49 31.64683768541611 37.0 30.0 39.0 3.5 40.0 50-51 30.912643049882078 35.5 29.5 38.5 2.0 39.5 52-53 31.458386029737973 36.5 30.5 39.0 2.0 40.0 54-55 31.873805422411536 37.0 31.0 39.5 2.0 40.5 56-57 31.70604705956002 36.5 31.0 39.5 2.0 41.0 58-59 31.357759157016183 36.0 31.0 39.0 2.0 40.5 60-61 30.88370324937521 35.5 30.0 39.0 2.0 40.0 62-63 30.372314746861953 35.0 29.0 38.5 2.0 40.0 64-65 29.80831050648822 35.0 28.5 38.0 2.0 40.0 66-67 29.301526348288547 34.0 28.0 37.5 2.0 40.0 68-69 28.769267094653305 34.0 27.5 37.0 2.0 39.0 70-71 28.23002164939466 34.0 26.0 36.0 2.0 39.0 72-73 27.66197829265977 33.5 26.0 36.0 2.0 38.5 74-75 27.048737911947057 33.0 25.0 35.0 2.0 37.5 76-77 26.44159850086543 32.5 23.5 35.0 2.0 37.0 78-79 25.858731556042805 32.0 21.5 35.0 2.0 36.0 80-81 25.252834223685923 31.5 19.0 34.5 2.0 36.0 82-83 24.599873580365973 31.0 16.5 34.0 2.0 35.0 84-85 23.947049652365408 31.0 8.5 34.0 2.0 35.0 86-87 23.288754783419392 30.0 4.0 34.0 2.0 35.0 88-89 22.59851755065128 30.0 2.0 34.0 2.0 35.0 90-91 21.821625957750957 29.0 2.0 34.0 2.0 35.0 92-93 20.960607750685064 29.0 2.0 34.0 2.0 35.0 94-95 20.01106385213326 27.5 2.0 33.0 2.0 34.0 96-97 19.083392593884106 26.0 2.0 33.0 2.0 34.0 98 18.44559105382548 25.0 2.0 32.0 2.0 34.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 132173.0 3 23574.0 4 17846.0 5 15263.0 6 14485.0 7 15141.0 8 17236.0 9 19831.0 10 22207.0 11 24444.0 12 26540.0 13 29714.0 14 25195.0 15 25850.0 16 28313.0 17 32559.0 18 36191.0 19 35722.0 20 37326.0 21 40776.0 22 44478.0 23 48902.0 24 54590.0 25 61591.0 26 69415.0 27 79068.0 28 90847.0 29 104622.0 30 124533.0 31 149150.0 32 183482.0 33 234083.0 34 309998.0 35 419967.0 36 541269.0 37 522168.0 38 199518.0 39 7630.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.673827249372025 16.598734043977093 12.666655404483476 25.060783302167405 2 16.58306140703226 18.329946332514794 38.322948026187746 26.7640442342652 3 20.824439138340484 21.74622587178641 26.87717663502417 30.552158354848935 4 14.175650307213719 14.030785301883194 33.74192494714123 38.051639443761864 5 16.156179429753582 35.00990895564578 32.12603528913546 16.707876325465186 6 36.128340861732006 32.09391299845981 16.31489846368896 15.462847676119228 7 32.31815491494991 29.346998214552368 18.748830556387304 19.58601631411042 8 28.61676292531774 33.06232396206507 18.485904287110724 19.835008825506463 9 27.13352336965549 16.525812462194967 18.49563259690378 37.84503157124577 10-11 27.29569835373214 24.530233278954057 25.389646652841368 22.78442171447244 12-13 27.301698383757504 21.516715746609087 26.235802335787007 24.945783533846402 14-15 24.248732801146254 23.15888292716435 23.690108417087753 28.90227585460165 16-17 24.94517026131218 26.23442264938436 24.20680248383826 24.6136046054652 18-19 24.917093359509725 25.45170773120195 25.649169510027413 23.98202939926091 20-21 25.35086355509718 24.702037018362383 25.662105079063473 24.28499434747696 22-23 25.130482586180914 24.330082360173368 25.574094895202208 24.96534015844351 24-25 24.853891811146145 24.579556722646384 25.667564894583233 24.89898657162424 26-27 24.85686712238416 24.806509929364005 25.64328077759791 24.693342170653924 28-29 24.846119978712405 24.843103675268654 25.618539624971216 24.692236721047728 30-31 24.975242642807114 24.843186148925145 25.477986529305824 24.703584678961914 32-33 24.84462036338832 24.849226504668508 25.38127463832734 24.924878493615836 34-35 25.00495394197434 24.84868726381124 25.537577370445003 24.608781423769415 36-37 25.05029800076916 24.81647850874025 25.458603629368902 24.674619861121684 38-39 24.984777610020384 24.879167198360914 25.39997390633258 24.736081285286122 40-41 25.126328630947402 24.789157453164854 25.43381750691297 24.650696408974774 42-43 25.077118051410647 24.74245652690101 25.345031922621096 24.835393499067248 44-45 24.9583425862025 24.912810668874528 25.347821202843523 24.781025542079448 46-47 25.079705898106454 24.81302720166905 25.38103085428186 24.72623604594263 48-49 25.113589404379837 24.913793204303378 25.154419584239317 24.818197807077468 50-51 24.89361940018113 25.187402768846823 25.107823709697257 24.811154121274797 52-53 24.97476068681119 25.041757580023816 25.185614183511635 24.79786754965336 54-55 24.99008818652316 24.962863218534935 25.26055582120025 24.786492773741656 56-57 24.88347809263321 25.1167624469139 25.274686411192864 24.72507304926003 58-59 24.971908578737875 24.99200544929375 25.279406297366087 24.756679674602285 60-61 25.044183657364155 24.935937922123916 25.263717345241492 24.756161075270438 62-63 24.84592917156268 25.108269238195707 25.249672302461867 24.796129287779745 64-65 24.93634408048392 24.941012853170218 25.27321098547908 24.849432080866784 66-67 24.930200890571985 25.013492825095135 25.245300145601533 24.811006138731347 68-69 24.93051899563526 25.019610708740704 25.279656573029786 24.770213722594253 70-71 24.829841091449804 24.892779159507132 25.340610219853083 24.93676952918998 72-73 24.975244343944905 24.96504453289478 25.135842642772342 24.923868480387974 74-75 24.816169664717734 25.12788522008391 25.176198208223393 24.879746906974958 76-77 25.00754553860854 24.941958144900585 25.090556207863706 24.959940108627173 78-79 24.97259355283955 24.865929921084504 25.265054577740635 24.896421948335306 80-81 24.910543760642476 25.07771841671518 25.183456256766135 24.828281565876207 82-83 25.07433924998051 24.968229423841574 25.074378232282545 24.88305309389537 84-85 25.015068167871863 24.988932690494117 25.016302198861368 24.97969694277266 86-87 25.035670768935 24.945636501095063 25.193552242218292 24.82514048775165 88-89 24.919111554395197 24.803429480386995 25.185961240333242 25.091497724884558 90-91 24.972003591854723 24.91489351751289 25.149803518479448 24.963299372152942 92-93 25.013637039745852 24.92882043341039 25.20858922404302 24.84895330280074 94-95 25.119527771758083 24.781627957857626 25.14855223285673 24.950292037527564 96-97 25.080524037300435 24.738512049082605 25.14557205162113 25.035391861995837 98 25.00921047640377 24.84129141012004 25.07112462385142 25.078373489624767 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 395.0 1 295.5 2 319.0 3 449.0 4 394.5 5 344.5 6 553.5 7 1095.0 8 1616.5 9 1646.5 10 1413.0 11 1366.0 12 1482.0 13 1715.0 14 2069.5 15 2391.5 16 2609.0 17 2801.5 18 2889.0 19 2878.0 20 2787.0 21 2607.0 22 2502.5 23 2557.0 24 2780.5 25 3213.0 26 3797.0 27 4887.0 28 6586.5 29 8775.0 30 11884.5 31 15934.0 32 20867.0 33 26263.0 34 32288.0 35 39491.0 36 48094.0 37 57940.5 38 68207.0 39 78815.5 40 89525.5 41 100931.5 42 112571.0 43 123791.0 44 135182.0 45 146687.0 46 158017.5 47 168497.5 48 175266.5 49 177831.5 50 178608.0 51 178636.0 52 180233.5 53 181438.0 54 178953.0 55 172740.5 56 162249.5 57 150556.5 58 138466.0 59 124522.0 60 110151.5 61 94150.5 62 77104.0 63 60084.5 64 45183.0 65 34859.5 66 27065.0 67 20931.5 68 16427.5 69 12912.5 70 10028.0 71 7786.0 72 6208.0 73 4882.0 74 3839.0 75 3008.0 76 2202.5 77 1463.5 78 922.5 79 587.0 80 354.0 81 225.5 82 143.5 83 82.0 84 46.5 85 29.0 86 23.0 87 15.5 88 11.5 89 11.0 90 10.5 91 6.0 92 3.5 93 6.0 94 7.5 95 10.0 96 7.0 97 5.0 98 4.5 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.465944433823965 2 0.04927959951336072 3 0.057479931820833344 4 0.05432396796748426 5 0.06531810434185607 6 0.06588721257770591 7 0.04345917437398741 8 0.01973770836151928 9 0.01218408995842147 10-11 0.014499325736083297 12-13 0.010463830972784468 14-15 0.014939091191058173 16-17 0.014227705896245878 18-19 0.05599248984077128 20-21 0.08439616452091304 22-23 0.10034412940279593 24-25 0.0703754070740671 26-27 0.08509461553763784 28-29 0.08675020313283736 30-31 0.05688495502880851 32-33 0.033396306021915324 34-35 0.3939263734327858 36-37 0.6168227877146087 38-39 0.5652926238140237 40-41 0.5601965182475502 42-43 0.5333578912159954 44-45 0.5184834714153748 46-47 0.5091707911923774 48-49 0.49868109166341806 50-51 0.5131286802871513 52-53 0.5944982237355902 54-55 0.5639086560586616 56-57 0.5219110551085613 58-59 0.4999615851940802 60-61 0.5126630462760015 62-63 0.5252998359674853 64-65 0.5433302196214551 66-67 0.5687848788976477 68-69 0.5231010086926109 70-71 0.4724633099800631 72-73 0.4549373631715057 74-75 0.4355100774840863 76-77 0.45002233749825715 78-79 0.4436457384011215 80-81 0.44047684026968487 82-83 0.46038269424634165 84-85 0.4274261536794012 86-87 0.4295991123981005 88-89 0.45659295076670525 90-91 0.43948090085694763 92-93 0.4347081522426615 94-95 0.4454306687771959 96-97 0.439804257809135 98 0.43508324630719897 >>END_MODULE >>Sequence Length Distribution pass #Length Count 98 3865697.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 57.16676331493531 #Duplication Level Percentage of deduplicated Percentage of total 1 76.10346539413885 43.505887936331064 2 13.143702858189025 15.027659007518611 3 4.553187996981075 7.8087306165546435 4 2.0200200537793926 4.619120332233177 5 1.0748613323489375 3.0723171691383864 6 0.6831883858944119 2.343340125356312 7 0.43769487125063067 1.751511937626212 8 0.32979031254471725 1.5082435792641913 9 0.23848990930958316 1.2270326578651192 >10 1.3110290913199536 13.456184917544364 >50 0.07824171804301698 3.0229693361807786 >100 0.025919686665622096 2.3446028556890863 >500 2.722596978665241E-4 0.10264593503473333 >1k 1.361298368640986E-4 0.20975359366332985 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3910 0.10114605464422069 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.5868556174992505E-5 0.0 0.0 0.0 3 0.0 2.5868556174992505E-5 0.0 0.0 0.0 4 0.0 2.5868556174992505E-5 0.0 0.0 0.0 5 0.0 2.5868556174992505E-5 0.0 0.0 0.0 6 0.0 2.5868556174992505E-5 0.0 0.0 2.5868556174992505E-5 7 0.0 2.5868556174992505E-5 0.0 0.0 7.760566852497751E-5 8 0.0 2.5868556174992505E-5 0.0 0.0 7.760566852497751E-5 9 0.0 2.5868556174992505E-5 0.0 0.0 7.760566852497751E-5 10-11 2.5868556174992505E-5 2.5868556174992505E-5 0.0 0.0 7.760566852497751E-5 12-13 2.5868556174992505E-5 5.173711234998501E-5 0.0 2.5868556174992505E-5 1.8107989322494754E-4 14-15 2.5868556174992505E-5 7.760566852497752E-5 0.0 2.5868556174992505E-5 2.0694844939994004E-4 16-17 2.5868556174992505E-5 1.0347422469997002E-4 0.0 2.5868556174992505E-5 2.0694844939994004E-4 18-19 2.5868556174992505E-5 1.0347422469997002E-4 0.0 3.880283426248876E-5 2.198827274874363E-4 20-21 2.5868556174992505E-5 1.0347422469997002E-4 0.0 5.173711234998501E-5 2.3281700557493254E-4 22-23 2.5868556174992505E-5 1.0347422469997002E-4 0.0 5.173711234998501E-5 2.3281700557493254E-4 24-25 2.5868556174992505E-5 1.0347422469997002E-4 0.0 9.053994661247376E-5 2.8455411792491757E-4 26-27 2.5868556174992505E-5 1.0347422469997002E-4 0.0 2.198827274874363E-4 3.6215978644989503E-4 28-29 2.5868556174992505E-5 1.0347422469997002E-4 0.0 7.631224071622789E-4 3.8802834262488756E-4 30-31 2.5868556174992505E-5 1.0347422469997002E-4 0.0 0.002198827274874363 3.8802834262488756E-4 32-33 2.5868556174992505E-5 1.0347422469997002E-4 0.0 0.005367725406310945 3.8802834262488756E-4 34-35 5.173711234998501E-5 1.4227705896245878E-4 0.0 0.008989323270809896 3.8802834262488756E-4 36-37 5.173711234998501E-5 1.6814561513745128E-4 0.0 0.01642653317112024 3.8802834262488756E-4 38-39 5.173711234998501E-5 1.8107989322494754E-4 0.0 0.026942101256254694 4.138968987998801E-4 40-41 5.173711234998501E-5 1.8107989322494754E-4 0.0 0.038388937363688876 4.268311768873763E-4 42-43 5.173711234998501E-5 2.0694844939994004E-4 0.0 0.04881396550221086 4.3976545497487256E-4 44-45 5.173711234998501E-5 2.0694844939994004E-4 0.0 0.06037721011243251 4.526997330623688E-4 46-47 1.0347422469997002E-4 2.0694844939994004E-4 0.0 0.07260010290511647 5.044368454123539E-4 48-49 1.0347422469997002E-4 2.0694844939994004E-4 0.0 0.08623283200933751 5.432396796748426E-4 50-51 1.0347422469997002E-4 2.0694844939994004E-4 0.0 0.1004217350713209 5.432396796748426E-4 52-53 1.0347422469997002E-4 2.0694844939994004E-4 0.0 0.11352415877395461 5.820425139373313E-4 54-55 1.0347422469997002E-4 2.0694844939994004E-4 1.2934278087496253E-5 0.1287219355267627 6.208453481998201E-4 56-57 1.0347422469997002E-4 2.0694844939994004E-4 2.5868556174992505E-5 0.14335060404372096 6.337796262873164E-4 58-59 1.0347422469997002E-4 2.0694844939994004E-4 2.5868556174992505E-5 0.1577076527208418 6.596481824623088E-4 60-61 1.0347422469997002E-4 2.3281700557493254E-4 2.5868556174992505E-5 0.17350040626567473 6.855167386373014E-4 62-63 1.0347422469997002E-4 2.3281700557493254E-4 2.5868556174992505E-5 0.18886632863362027 7.243195728997902E-4 64-65 1.2934278087496252E-4 2.3281700557493254E-4 2.5868556174992505E-5 0.20381835410276594 7.243195728997902E-4 66-67 1.2934278087496252E-4 2.3281700557493254E-4 2.5868556174992505E-5 0.22002500454639876 7.501881290747827E-4 68-69 1.2934278087496252E-4 2.3281700557493254E-4 2.5868556174992505E-5 0.23656794622030647 7.760566852497751E-4 70-71 1.2934278087496252E-4 2.3281700557493254E-4 2.5868556174992505E-5 0.2539645502479889 8.019252414247676E-4 72-73 1.2934278087496252E-4 2.3281700557493254E-4 2.5868556174992505E-5 0.2705850975904216 8.407280756872564E-4 74-75 1.2934278087496252E-4 2.3281700557493254E-4 2.5868556174992505E-5 0.28910698381171623 8.536623537747527E-4 76-77 1.2934278087496252E-4 2.3281700557493254E-4 2.5868556174992505E-5 0.3064647850051362 8.536623537747527E-4 78-79 1.2934278087496252E-4 2.3281700557493254E-4 2.5868556174992505E-5 0.32545230523758073 8.536623537747527E-4 80-81 1.2934278087496252E-4 2.3281700557493254E-4 2.5868556174992505E-5 0.3445303654166377 8.795309099497452E-4 82-83 1.2934278087496252E-4 2.3281700557493254E-4 2.5868556174992505E-5 0.3633109371996822 9.571365784747227E-4 84-85 1.2934278087496252E-4 2.3281700557493254E-4 2.5868556174992505E-5 0.3823113917102142 9.571365784747227E-4 86 1.2934278087496252E-4 2.3281700557493254E-4 2.5868556174992505E-5 0.396720177499685 9.571365784747227E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 5785 0.0 44.80042 1 GGTATCA 3255 0.0 37.05334 1 TCAACGC 7235 0.0 35.54894 4 CAACGCA 7610 0.0 33.73694 5 ATCAACG 7675 0.0 33.571125 3 GTACCTG 4585 0.0 33.433506 1 TATCAAC 7800 0.0 33.209457 2 AACGCAG 8175 0.0 31.679527 6 TACCTGG 4960 0.0 29.855804 2 ACGCAGA 9650 0.0 26.639046 7 GTACATG 12005 0.0 25.576477 1 CGCAGAG 10285 0.0 24.899755 8 TACATGG 12300 0.0 24.37702 2 ACCTGGG 6315 0.0 23.08669 3 ACATGGG 12820 0.0 22.422676 3 GAGTACA 9175 0.0 21.97582 1 GCAGAGT 11935 0.0 21.111378 9 AGTACAT 8740 0.0 20.982464 2 CATGGGG 9855 0.0 18.88738 4 AGAGTAC 10385 0.0 17.910013 10-11 >>END_MODULE