##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921474_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3865697 Sequences flagged as poor quality 0 Sequence length 101 %GC 49 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.948026190361013 33.0 31.0 34.0 30.0 34.0 2 32.06201960474398 34.0 31.0 34.0 30.0 34.0 3 32.189622207845055 34.0 31.0 34.0 30.0 34.0 4 35.73249481270777 37.0 35.0 37.0 35.0 37.0 5 35.53459259740223 37.0 35.0 37.0 33.0 37.0 6 35.57375241773993 37.0 35.0 37.0 33.0 37.0 7 35.5070017127571 37.0 35.0 37.0 33.0 37.0 8 35.4556394357861 37.0 35.0 37.0 33.0 37.0 9 37.081971763436194 39.0 37.0 39.0 34.0 39.0 10-11 36.995048758348105 39.0 37.0 39.0 33.0 39.0 12-13 36.873962444547516 39.0 37.0 39.0 33.0 39.0 14-15 38.1695127683313 40.0 38.0 41.0 33.0 41.0 16-17 38.065805855968534 40.0 38.0 41.0 33.0 41.0 18-19 37.95386355940468 40.0 38.0 41.0 33.0 41.0 20-21 37.835094680209025 40.0 38.0 41.0 33.0 41.0 22-23 37.79702302068682 40.0 38.0 41.0 32.5 41.0 24-25 37.85150349341917 40.0 38.0 41.0 33.0 41.0 26-27 37.735466333755596 40.0 38.0 41.0 33.0 41.0 28-29 37.59720420405428 40.0 38.0 41.0 32.0 41.0 30-31 37.45424951826281 40.0 37.5 41.0 32.0 41.0 32-33 37.290053643624944 40.0 37.0 41.0 31.5 41.0 34-35 37.13677520509238 40.0 37.0 41.0 31.0 41.0 36-37 37.03372690616983 40.0 37.0 41.0 31.0 41.0 38-39 36.9985073843087 40.0 37.0 41.0 31.0 41.0 40-41 36.82991954620344 40.0 36.5 41.0 30.5 41.0 42-43 36.581757571791066 39.0 36.0 41.0 30.0 41.0 44-45 36.36298124245123 39.0 35.5 41.0 30.0 41.0 46-47 36.0839796807665 39.0 35.0 40.0 29.5 41.0 48-49 35.7400921489708 39.0 35.0 40.0 28.5 41.0 50-51 35.4509667984842 38.5 35.0 40.0 28.0 41.0 52-53 35.12492145659631 38.0 34.0 40.0 27.0 41.0 54-55 34.78240521696346 38.0 34.0 40.0 26.0 41.0 56-57 34.385440969636264 37.5 33.5 40.0 26.0 41.0 58-59 33.9763889927224 37.0 33.0 40.0 25.0 41.0 60-61 33.536839410848806 36.0 33.0 39.0 23.5 40.5 62-63 33.0756793664894 36.0 32.0 39.0 22.5 40.0 64-65 32.544955023634806 35.0 31.5 38.5 21.5 40.0 66-67 32.00134309543661 35.0 31.0 38.0 20.0 40.0 68-69 31.486976216708136 35.0 31.0 37.0 18.0 39.5 70-71 30.923718413522842 34.0 30.0 36.5 16.0 39.0 72-73 30.364849857606533 34.0 29.0 36.0 12.5 39.0 74-75 29.84134517009481 34.0 29.0 35.5 8.0 38.0 76-77 28.594852622955187 32.0 27.5 34.5 7.5 36.0 78-79 29.53515497981347 34.0 29.0 35.0 7.0 37.0 80-81 29.56184926030157 34.0 29.0 35.0 7.0 36.0 82-83 29.219023374051304 34.0 29.0 35.0 2.0 36.0 84-85 28.713722001491583 34.0 29.0 35.0 2.0 35.5 86-87 28.17894276245655 33.0 27.5 35.0 2.0 35.0 88-89 27.616533706599355 33.0 26.5 35.0 2.0 35.0 90-91 27.115735661641356 32.5 25.5 34.5 2.0 35.0 92-93 26.646025283409436 32.0 25.0 34.0 2.0 35.0 94-95 26.111457261135573 32.0 24.5 34.0 2.0 35.0 96-97 25.297470029337532 32.0 21.5 34.0 2.0 35.0 98-99 24.23832726672577 31.0 10.0 34.0 2.0 35.0 100-101 20.64595078196765 27.0 2.0 32.0 2.0 34.5 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 23141.0 3 12415.0 4 7673.0 5 5936.0 6 5163.0 7 5404.0 8 6254.0 9 7552.0 10 8926.0 11 10582.0 12 12144.0 13 14871.0 14 16397.0 15 18849.0 16 21161.0 17 24568.0 18 25001.0 19 22929.0 20 23274.0 21 24885.0 22 26623.0 23 29789.0 24 33779.0 25 39317.0 26 46976.0 27 56447.0 28 68441.0 29 83296.0 30 102393.0 31 127261.0 32 164436.0 33 217072.0 34 306051.0 35 455152.0 36 686528.0 37 798062.0 38 318241.0 39 8708.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.87118408508602 17.08627913168166 13.04978937639116 24.992747406841154 2 16.70627573759661 18.634905943223178 37.923743117993986 26.735075201186227 3 20.843420496425537 21.887949576170996 27.004993436768686 30.26363649063478 4 14.435963685740955 14.352591224381928 33.60521055882068 37.60623453105644 5 16.216008567703483 34.999689575960765 32.14394362699448 16.640358229341278 6 36.31975812609852 32.16482836634163 16.150933042035426 15.364480465524426 7 32.35893036322461 29.33882393386841 18.682064302881503 19.620181400025473 8 28.62135892160506 33.11232331131779 18.43844559276892 19.827872174308233 9 27.01574701414686 16.493364152259026 18.56129093564715 37.92959789794696 10-11 27.278266081996268 24.52731159074108 25.45187020731459 22.74255211994806 12-13 27.23134027879373 21.41745393248826 26.354863224835867 24.996342563882138 14-15 24.190599750024884 23.11343141907926 23.77917751533741 28.91679131555845 16-17 24.898652866903408 26.21572890943873 24.339187967862372 24.546430255795492 18-19 24.83952710571181 25.44373951271724 25.76006597995344 23.956667401617512 20-21 25.24496463206885 24.66742578155475 25.76236771392349 24.325241872452917 22-23 25.061708969681472 24.31139311395702 25.708702090470602 24.918195825890905 24-25 24.782392114698123 24.522882565362586 25.803493681433494 24.891231638505797 26-27 24.733249096319337 24.814247552031578 25.77183015758411 24.68067319406498 28-29 24.742152272017485 24.914167193432178 25.728741162823976 24.614939371726365 30-31 24.917641480160032 24.797439238238823 25.569317941203213 24.715601340397924 32-33 24.755681829205905 24.780723851556168 25.54045690049353 24.923137418744393 34-35 24.861915329455147 24.815192909782265 25.719527850028793 24.60336391073379 36-37 24.856067455133417 24.838720651918994 25.589574635946743 24.715637257000843 38-39 24.84631199896405 24.84913214031005 25.610311575166662 24.694244285559233 40-41 24.977813138761675 24.778403063468655 25.58214960283578 24.661634194933892 42-43 24.95267820532886 24.705404527939713 25.53233623632312 24.80958103040831 44-45 24.782630012238926 24.85650857740361 25.544351523811702 24.816509886545756 46-47 24.881610582520956 24.84779242742422 25.560781082946853 24.70981590710797 48-49 24.96295841188435 24.91384556681229 25.348798856577424 24.77439716472593 50-51 24.83853254799138 25.158265978425305 25.25098582749684 24.752215646086473 52-53 24.961315852138405 25.01075188427985 25.250611062728527 24.777321200853216 54-55 24.92294088870918 24.914494459892918 25.351186471019954 24.81137818037795 56-57 24.807980429208577 25.09275184569156 25.338305105616747 24.76096261948312 58-59 24.933597799592437 24.962622691282636 25.32957285939807 24.774206649726857 60-61 25.008925111331067 24.92339926188036 25.334471780867563 24.733203845921018 62-63 24.808890373389005 25.054070056475542 25.31799428453081 24.819045285604645 64-65 24.881306620596664 24.918353028466232 25.33681962797335 24.863520722963752 66-67 24.91598598015235 24.982105130224966 25.272278918782394 24.82962997084029 68-69 24.85912272943346 25.01722261113033 25.320117964047288 24.80353669538892 70-71 24.786950128627417 24.884124076850725 25.418748957857268 24.91017683666459 72-73 24.99003746946549 24.966412039912225 25.18732145075146 24.856229039870822 74-75 24.773421716420113 25.124631643677986 25.192621951629828 24.909324688272072 76-77 24.89977813807746 24.94244588823774 25.21625115880109 24.941524814883714 78-79 24.82180338546386 24.97403483629262 25.356199072813258 24.847962705430266 80-81 24.79520689951423 25.15272793518663 25.285892617407985 24.766172547891156 82-83 24.942808134195754 24.9985703650783 25.19786535452488 24.860756146201066 84-85 24.87043133151649 25.103630354838717 25.092646999085883 24.93329131455891 86-87 24.832802002374642 25.043525801654948 25.256619321040226 24.867052874930188 88-89 24.739303390993168 24.946511104211556 25.252284524520903 25.061900980274377 90-91 24.786206896551725 25.08285575522098 25.22243160110086 24.908505747126437 92-93 24.84272123069278 25.094142096981244 25.288573025798172 24.774563646527806 94-95 24.904598605285354 24.99325745201925 25.18640800635695 24.915735936338447 96-97 24.89514246990609 24.885712859169214 25.2886637969951 24.930480873929596 98-99 24.77075826634302 24.971803593384468 25.268792376265992 24.988645764006524 100-101 25.356560585419057 24.423514035538865 25.334609440363515 24.885315938678566 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 88.0 1 81.0 2 187.5 3 297.0 4 213.5 5 163.5 6 357.5 7 839.0 8 1292.0 9 1290.0 10 944.5 11 709.5 12 683.5 13 711.5 14 792.0 15 878.0 16 970.5 17 1059.0 18 1128.5 19 1258.5 20 1349.5 21 1446.0 22 1630.0 23 1827.0 24 2066.5 25 2492.5 26 3114.0 27 3912.5 28 5131.5 29 7071.0 30 9835.5 31 13235.0 32 17438.0 33 22219.5 34 27644.0 35 33882.5 36 41671.5 37 50719.5 38 60298.0 39 70744.5 40 81625.5 41 92075.5 42 102652.0 43 113462.0 44 125394.0 45 137247.0 46 148218.0 47 158769.0 48 168803.0 49 175133.0 50 176354.5 51 176987.5 52 178437.5 53 179406.0 54 178015.0 55 172228.0 56 161828.0 57 148651.0 58 136069.0 59 123619.0 60 109025.0 61 94371.0 62 78220.5 63 60157.0 64 44852.0 65 33992.0 66 26243.5 67 20836.0 68 16393.0 69 12822.0 70 10158.5 71 7968.0 72 6090.0 73 4884.5 74 3931.5 75 3038.0 76 2217.5 77 1427.5 78 971.5 79 621.0 80 386.0 81 235.5 82 128.0 83 61.5 84 31.0 85 10.0 86 4.5 87 4.5 88 3.0 89 3.5 90 3.0 91 1.0 92 1.5 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.3079134241509358 2 0.0 3 0.005768688027023328 4 0.05978223332040768 5 4.397654549748726E-4 6 0.06536984145420606 7 0.07380299076725362 8 0.10430201849756977 9 0.09229900843237325 10-11 0.09550670939807232 12-13 0.09576539495982225 14-15 0.06499474738966866 16-17 0.03568567324340216 18-19 0.03862175436926381 20-21 0.02867529451997919 22-23 0.041156872874413074 24-25 0.03342217457809032 26-27 0.02091472766748144 28-29 0.023695597456293134 30-31 0.0033241094684865365 32-33 0.005031434176036042 34-35 0.00814859519512264 36-37 0.011162281989509266 38-39 0.016620547342432682 40-41 0.020617239271469027 42-43 0.0036733349768489354 44-45 0.014758011297833225 46-47 0.023514517563068188 48-49 0.0028326069011616792 50-51 0.00748894701266033 52-53 0.0024704471147117845 54-55 0.004087231875648816 56-57 0.0036345321425864468 58-59 0.001280493530662129 60-61 0.005147842678823508 62-63 0.014809748410183208 64-65 0.007113852948122939 66-67 0.03779396057166405 68-69 0.05992451037937014 70-71 0.011990075787109025 72-73 0.03148203286496588 74-75 0.049434810850410675 76-77 0.2974366589000638 78-79 0.0731821454190538 80-81 0.03386194003306519 82-83 0.02778282933194195 84-85 0.01960836558064432 86-87 0.11592993449822891 88-89 0.5183799971906748 90-91 0.131205316919562 92-93 0.04803790881696108 94-95 0.008239135141735113 96-97 0.0055358710214483955 98-99 0.010334488191909505 100-101 0.007631224071622788 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 3865697.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 52.1951091072291 #Duplication Level Percentage of deduplicated Percentage of total 1 71.65166371448136 37.39866405291842 2 15.407440512943914 16.08386077272499 3 5.409866576235099 8.471057286064287 4 2.4177528983472394 5.047795052942141 5 1.333820264842755 3.480944712645041 6 0.8041351798319493 2.5183154068973925 7 0.5609644084560579 2.0495718953245317 8 0.39265001015539563 1.639552809681239 9 0.2922583190845255 1.3729009366900964 >10 1.593042075738622 15.081787292529961 >50 0.10059551814689392 3.5834326137011185 >100 0.03521547008773365 2.9163905540944572 >500 3.967011113832374E-4 0.1254257320972149 >1k 1.9835053708995256E-4 0.23030088168912274 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 7.760566852497751E-5 2 0.0 0.0 0.0 0.0 7.760566852497751E-5 3 0.0 0.0 0.0 0.0 7.760566852497751E-5 4 0.0 0.0 0.0 0.0 7.760566852497751E-5 5 0.0 5.173711234998501E-5 0.0 0.0 7.760566852497751E-5 6 0.0 5.173711234998501E-5 0.0 0.0 7.760566852497751E-5 7 0.0 5.173711234998501E-5 0.0 0.0 7.760566852497751E-5 8 0.0 5.173711234998501E-5 0.0 0.0 1.0347422469997002E-4 9 0.0 5.173711234998501E-5 0.0 0.0 1.0347422469997002E-4 10-11 0.0 5.173711234998501E-5 0.0 0.0 1.0347422469997002E-4 12-13 0.0 5.173711234998501E-5 0.0 0.0 1.6814561513745128E-4 14-15 0.0 5.173711234998501E-5 0.0 0.0 2.198827274874363E-4 16-17 0.0 5.173711234998501E-5 0.0 0.0 3.1042267409991004E-4 18-19 0.0 5.173711234998501E-5 0.0 1.2934278087496253E-5 3.3629123027490256E-4 20-21 0.0 5.173711234998501E-5 0.0 2.5868556174992505E-5 3.492255083623988E-4 22-23 0.0 5.173711234998501E-5 0.0 2.5868556174992505E-5 3.8802834262488756E-4 24-25 0.0 5.173711234998501E-5 0.0 9.053994661247376E-5 4.3976545497487256E-4 26-27 0.0 5.173711234998501E-5 0.0 2.198827274874363E-4 5.173711234998501E-4 28-29 0.0 5.173711234998501E-5 0.0 7.372538509872864E-4 5.432396796748426E-4 30-31 0.0 5.173711234998501E-5 0.0 0.002134155884436882 5.561739577623389E-4 32-33 0.0 5.173711234998501E-5 0.0 0.0052771854596984705 6.467139043748126E-4 34-35 0.0 6.467139043748126E-5 0.0 0.008847046211847436 6.725824605498051E-4 36-37 0.0 7.760566852497751E-5 0.0 0.016374796058770257 6.725824605498051E-4 38-39 0.0 7.760566852497751E-5 0.0 0.027110246871392144 6.725824605498051E-4 40-41 0.0 7.760566852497751E-5 0.0 0.038505345866476345 6.725824605498051E-4 42-43 0.0 7.760566852497751E-5 0.0 0.04881396550221086 7.243195728997902E-4 44-45 0.0 7.760566852497751E-5 0.0 0.06046775005904498 7.501881290747827E-4 46-47 0.0 7.760566852497751E-5 0.0 0.07254836579276647 8.14859519512264E-4 48-49 0.0 7.760566852497751E-5 0.0 0.08611642350655005 8.795309099497451E-4 50-51 0.0 7.760566852497751E-5 0.0 0.10021478662192096 8.795309099497451E-4 52-53 0.0 7.760566852497751E-5 0.0 0.11313613043132972 8.924651880372414E-4 54-55 0.0 7.760566852497751E-5 0.0 0.1280105502319504 9.053994661247376E-4 56-57 0.0 7.760566852497751E-5 0.0 0.14235466463098376 9.053994661247376E-4 58-59 0.0 7.760566852497751E-5 0.0 0.15646596202444218 9.183337442122338E-4 60-61 0.0 7.760566852497751E-5 0.0 0.17203883284178767 9.312680222997302E-4 62-63 0.0 7.760566852497751E-5 0.0 0.18722367531650824 9.312680222997302E-4 64-65 0.0 7.760566852497751E-5 0.0 0.2019299495019915 9.312680222997302E-4 66-67 0.0 7.760566852497751E-5 0.0 0.21789084866196184 9.442023003872265E-4 68-69 0.0 1.0347422469997002E-4 0.0 0.2340069591589822 9.571365784747227E-4 70-71 0.0 1.0347422469997002E-4 0.0 0.25101553484403977 0.0010476765250871964 72-73 0.0 1.0347422469997002E-4 0.0 0.2675584765179475 0.0011123479155246778 74-75 0.0 1.0347422469997002E-4 0.0 0.2858087428994047 0.0011770193059621589 76-77 0.0 1.0347422469997002E-4 0.0 0.30270091008167477 0.0012028878621371515 78-79 0.0 1.0347422469997002E-4 0.0 0.32111932207826943 0.0012158221402246477 80-81 0.0 1.0347422469997002E-4 0.0 0.3398352224708765 0.0012675592525746328 82-83 0.0 1.0347422469997002E-4 0.0 0.35822776591129624 0.001332230643012114 84-85 0.0 1.0347422469997002E-4 0.0 0.3769695348600783 0.0013451649210996103 86-87 0.0 1.0347422469997002E-4 0.0 0.39625454348853517 0.0013710334772746029 88-89 0.0 1.0347422469997002E-4 0.0 0.41790652500700387 0.0013969020334495953 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 5765 0.0 45.695576 1 GGTATCA 3305 0.0 37.475742 1 TCAACGC 7370 0.0 34.93291 4 CAACGCA 7645 0.0 33.65976 5 GTACCTG 4590 0.0 33.315067 1 TATCAAC 7880 0.0 33.032425 2 ATCAACG 7795 0.0 33.028294 3 AACGCAG 8465 0.0 30.736473 6 TACCTGG 5160 0.0 29.733011 2 ACGCAGA 10245 0.0 24.979774 7 GTACATG 11830 0.0 24.724756 1 CGCAGAG 10825 0.0 23.465918 8 ACCTGGG 6410 0.0 23.194729 3 TACATGG 12330 0.0 23.152477 2 ACATGGG 12565 0.0 21.775242 3 GAGTACA 9340 0.0 19.636417 1 GCAGAGT 12830 0.0 19.576248 9 CATGGGG 9635 0.0 19.572294 4 GTATAGC 890 0.0 18.733822 1 AGTACAT 8930 0.0 18.66989 2 >>END_MODULE