##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921470_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4010423 Sequences flagged as poor quality 0 Sequence length 98 %GC 49 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.593013505059194 31.0 31.0 34.0 27.0 34.0 2 30.697216228811772 31.0 31.0 34.0 27.0 34.0 3 30.83117042765813 31.0 31.0 34.0 27.0 34.0 4 34.341693133118376 37.0 35.0 37.0 31.0 37.0 5 34.331508172579305 37.0 35.0 37.0 31.0 37.0 6 34.43188561406116 37.0 35.0 37.0 32.0 37.0 7 34.32511533072696 37.0 35.0 37.0 31.0 37.0 8 34.30418337417275 37.0 35.0 37.0 31.0 37.0 9 35.79159729534765 39.0 37.0 39.0 30.0 39.0 10-11 35.674355174005335 39.0 37.0 39.0 30.0 39.0 12-13 35.52429681357802 39.0 36.5 39.0 30.0 39.0 14-15 36.57940134993241 40.0 37.0 41.0 30.0 41.0 16-17 36.44034108122759 40.0 36.5 41.0 30.0 41.0 18-19 36.262572052873224 40.0 36.0 41.0 29.0 41.0 20-21 36.150936696702566 39.0 36.0 41.0 29.0 41.0 22-23 36.203881984518844 40.0 36.5 41.0 29.0 41.0 24-25 36.08085481257214 40.0 36.0 41.0 28.5 41.0 26-27 35.82519873838745 39.0 36.0 41.0 27.0 41.0 28-29 35.59676385757812 39.0 36.0 40.5 27.0 41.0 30-31 35.349214534227436 39.0 35.0 40.0 26.0 41.0 32-33 35.093126710075225 39.0 35.0 40.0 25.0 41.0 34-35 34.67910729117602 38.0 34.5 40.0 24.0 41.0 36-37 34.311525492448055 38.0 34.0 40.0 22.5 41.0 38-39 34.08646008164226 38.0 33.5 40.0 21.0 41.0 40-41 33.82532353819036 38.0 33.0 40.0 18.5 41.0 42-43 33.54816960704644 38.0 33.0 40.0 17.5 41.0 44-45 33.23902952381831 38.0 33.0 40.0 15.0 41.0 46-47 32.95601025128771 38.0 32.0 40.0 14.0 41.0 48-49 32.75264516984866 37.0 32.0 40.0 10.5 41.0 50-51 31.990290051697787 36.0 31.0 39.0 10.5 40.0 52-53 32.48104227409428 37.0 31.5 39.0 11.5 40.0 54-55 32.91262779512286 37.0 33.0 40.0 8.5 41.0 56-57 32.76406391545231 37.0 32.5 40.0 8.0 41.0 58-59 32.43895531718225 37.0 32.0 40.0 6.5 41.0 60-61 31.986808623429496 36.0 31.0 39.0 2.0 41.0 62-63 31.501732734925966 35.5 31.0 39.0 2.0 40.0 64-65 30.96273211080228 35.0 30.0 38.5 2.0 40.0 66-67 30.47925717561464 35.0 30.0 38.0 2.0 40.0 68-69 29.96693802623813 34.5 29.0 37.0 2.0 39.5 70-71 29.45469019103471 34.0 29.0 36.5 2.0 39.0 72-73 28.904404099018983 34.0 28.0 36.0 2.0 39.0 74-75 28.313321687014064 34.0 27.0 35.5 2.0 38.0 76-77 27.730746607028735 33.0 26.0 35.0 2.0 37.0 78-79 27.17634810592299 33.0 25.5 35.0 2.0 36.5 80-81 26.61034758677576 32.5 24.5 35.0 2.0 36.0 82-83 25.98985705497899 32.0 23.5 34.5 2.0 35.5 84-85 25.382382107822544 31.5 20.5 34.0 2.0 35.0 86-87 24.766175538091616 31.0 18.5 34.0 2.0 35.0 88-89 24.11965346298882 31.0 13.0 34.0 2.0 35.0 90-91 23.38683699948858 30.5 4.5 34.0 2.0 35.0 92-93 22.571773351589094 30.0 2.0 34.0 2.0 35.0 94-95 21.667186478832782 29.0 2.0 34.0 2.0 35.0 96-97 20.765409908131886 29.0 2.0 33.5 2.0 34.5 98 20.138854430068847 27.0 2.0 33.0 2.0 34.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 110581.0 3 19659.0 4 15064.0 5 12908.0 6 12290.0 7 12492.0 8 14420.0 9 16874.0 10 18732.0 11 20514.0 12 23083.0 13 26740.0 14 22183.0 15 22135.0 16 24397.0 17 27626.0 18 31608.0 19 31274.0 20 32524.0 21 35761.0 22 39076.0 23 42848.0 24 49064.0 25 54719.0 26 62301.0 27 71922.0 28 83232.0 29 97720.0 30 116679.0 31 141668.0 32 177663.0 33 230487.0 34 314585.0 35 445852.0 36 609123.0 37 647997.0 38 282541.0 39 12080.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.073382772961864 16.810116751014682 13.291301297790248 24.825199178233202 2 16.216931579912412 18.34521004504128 38.87630050305036 26.56155787199595 3 20.635241801444337 21.604129129091667 27.035386903766923 30.72524216569707 4 14.003220295345093 14.255395267053995 34.053475663668245 37.68790877393267 5 16.0464453053559 35.41231224255513 32.229346213238514 16.311896238850448 6 36.10955099282989 32.47352033627695 16.09716042393411 15.31976824695906 7 32.106517912178674 29.931277881176516 18.51982399514263 19.44238021150218 8 28.304309245327158 33.53799750502412 18.427257387038996 19.73043586260973 9 27.058764265126236 16.614055921838506 18.53861665246035 37.78856316057491 10-11 27.09749017417154 24.719315483909583 25.466789198571515 22.716405143347366 12-13 27.046138745413955 21.730654325494914 26.308045003581054 24.915161925510077 14-15 24.143766245182945 23.337737080695813 23.77437517807744 28.744121496043796 16-17 24.62858623485335 26.51475193403495 24.389402079513083 24.467259751598615 18-19 24.66339637939906 25.688827904510937 26.004284845555333 23.64349087053467 20-21 25.151236481925366 24.905637069876608 25.786503324694575 24.15662312350345 22-23 24.90783378795051 24.571616338463308 25.664245050742117 24.856304822844066 24-25 24.57172171898677 24.89167816319101 25.82680782377469 24.709792294047535 26-27 24.697150058645903 24.983691447680368 25.794726859823815 24.524431633849915 28-29 24.658007216818245 25.15436000088844 25.71105674553391 24.476576036759404 30-31 24.80523260129258 25.06470208350252 25.61261929826728 24.51744601693762 32-33 24.66374161248133 25.038184465984305 25.534248912458267 24.763825009076097 34-35 24.72255730323408 25.08738636017988 25.711786547088124 24.478269789497915 36-37 24.82208091125085 25.101213711418662 25.51442409868672 24.562281278643763 38-39 24.863535813988133 25.016417333443847 25.566512426701955 24.55353442586607 40-41 24.89813825762159 24.99992790213649 25.57747567449432 24.524458165747596 42-43 24.863113500969988 24.873680837845658 25.56537132593879 24.697834335245567 44-45 24.78831953213155 25.098509735916576 25.488024106324715 24.62514662562716 46-47 24.857331590370695 25.047969695408884 25.46144083658196 24.63325787763846 48-49 24.869891326740056 25.12782804352544 25.313047758391587 24.68923287134291 50-51 24.817617503706554 25.233691476868973 25.191443657249994 24.75724736217448 52-53 24.871649568327133 25.280130806311135 25.318925674401054 24.529293950960678 54-55 24.789466134267187 25.022846498115854 25.409556707716803 24.778130659900157 56-57 24.79828467871003 25.121091861611667 25.402374672664997 24.678248787013313 58-59 24.827824899677303 25.117941196814936 25.463770048249128 24.590463855258633 60-61 24.90667603770506 24.95963878055854 25.400723431464385 24.73296175027202 62-63 24.746814936348862 25.161103524517582 25.412248668411824 24.67983287072173 64-65 24.80450263851548 24.95446188299769 25.46031420485872 24.78072127362811 66-67 24.77603671542001 25.20443260523713 25.32564194490204 24.69388873444082 68-69 24.802934851245737 25.14478601150166 25.317428743824205 24.734850393428395 70-71 24.681429300348977 25.00432511267529 25.437763413768526 24.8764821732072 72-73 24.83691558940543 25.028166591910644 25.276408364040503 24.858509454643425 74-75 24.703433023851087 25.179177446783996 25.281564559231995 24.83582497013292 76-77 24.82147587458504 24.99845006678803 25.333911975065803 24.846162083561126 78-79 24.79864179411223 24.86401722504841 25.428938597316275 24.908402383523086 80-81 24.654929152365685 25.145543791379758 25.327938471726945 24.87158858452761 82-83 24.882327012221555 25.140814893190864 25.180234420299342 24.796623674288234 84-85 24.822212279908925 25.072160032676905 25.214007041511916 24.891620645902258 86-87 24.8146012866399 25.0223209757566 25.348050693221257 24.81502704438224 88-89 24.814992911104284 24.821656560757642 25.328419601501224 25.03493092663685 90-91 24.785861632976932 24.866287189618966 25.309642150104995 25.038209027299104 92-93 24.765043855474797 25.127546547915426 25.325334488786922 24.782075107822855 94-95 24.822445436734693 24.922402265304033 25.313850790167436 24.94130150779384 96-97 24.843161589836907 24.984990550997686 25.22960011120893 24.942247747956472 98 24.8619037755777 24.94167461661783 25.263087239245152 24.93333436855932 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 601.0 1 467.5 2 524.5 3 699.5 4 559.0 5 520.5 6 938.5 7 2141.5 8 3206.5 9 3007.0 10 2264.0 11 1831.5 12 1895.0 13 2185.0 14 2474.0 15 2707.0 16 2939.0 17 3089.0 18 3105.5 19 3073.5 20 2894.0 21 2621.5 22 2475.5 23 2423.5 24 2471.0 25 2682.0 26 3083.5 27 3852.5 28 5044.0 29 6831.0 30 9704.0 31 13772.5 32 19500.5 33 26135.0 34 33725.5 35 43365.5 36 53739.0 37 64187.0 38 74533.5 39 84349.0 40 95116.0 41 107505.0 42 120673.0 43 134935.5 44 147682.5 45 158685.0 46 170074.0 47 182719.0 48 189294.5 49 188566.0 50 188270.0 51 186380.5 52 185021.0 53 185217.0 54 182379.0 55 174096.0 56 161551.0 57 150907.5 58 140925.5 59 128538.0 60 112761.5 61 93948.0 62 75729.5 63 58334.5 64 43696.5 65 33262.0 66 25574.0 67 19597.0 68 14988.5 69 11670.5 70 8909.5 71 6773.5 72 5497.0 73 4194.5 74 3172.5 75 2424.0 76 1647.0 77 1039.0 78 626.5 79 361.0 80 204.0 81 116.5 82 82.5 83 64.5 84 34.5 85 21.5 86 20.0 87 17.5 88 11.0 89 8.5 90 9.0 91 8.0 92 8.0 93 5.5 94 6.0 95 7.5 96 3.5 97 2.0 98 2.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.474338991173749 2 0.04682797799633605 3 0.05528095166021141 4 0.05223887854223856 5 0.06298587455737213 6 0.06323522481294366 7 0.04164149268044792 8 0.01907529455122315 9 0.011694526986305435 10-11 0.014537119899821042 12-13 0.010746996015133566 14-15 0.014474782335928155 16-17 0.01351478385197771 18-19 0.05262537143837445 20-21 0.08198636403192382 22-23 0.09820659815685279 24-25 0.06707521874874545 26-27 0.08285908992642423 28-29 0.08462947674098219 30-31 0.05596666486303315 32-33 0.0315802098681361 34-35 0.39770119012383476 36-37 0.6244727800533759 38-39 0.574041690864031 40-41 0.5682068948836569 42-43 0.5415139500247231 44-45 0.5260417666665087 46-47 0.515269835625818 48-49 0.5061062137335638 50-51 0.5203441133266989 52-53 0.6002110001862646 54-55 0.57203442130668 56-57 0.5286100742988956 58-59 0.506156083784678 60-61 0.5192968422532984 62-63 0.5310038367523825 64-65 0.5487201724107408 66-67 0.5761611680363892 68-69 0.5301186433451035 70-71 0.4786901531334724 72-73 0.46250732154687924 74-75 0.4421728082050198 76-77 0.45669746059206223 78-79 0.4512616250206026 80-81 0.44838162956875127 82-83 0.4674444566071958 84-85 0.43358269190058 86-87 0.4374102183236033 88-89 0.46420290328476577 90-91 0.4466112427541933 92-93 0.4429208589717344 94-95 0.4538049976274323 96-97 0.4472844884442364 98 0.44224761328169127 >>END_MODULE >>Sequence Length Distribution pass #Length Count 98 4010423.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 53.339529217130476 #Duplication Level Percentage of deduplicated Percentage of total 1 73.69024390435071 39.30602917753585 2 14.052407170721914 14.990975657074706 3 5.104666916494127 8.168415904081733 4 2.356811584867416 5.0284488156122835 5 1.3134625703378418 3.502973757307129 6 0.7605482109733653 2.434037011215008 7 0.5323498507552914 1.987670329266784 8 0.36740020848414334 1.5677563323855832 9 0.2757152001875636 1.3235867078410375 >10 1.4152725960107133 13.589579666277343 >50 0.08870332734330402 3.2393672505083217 >100 0.040491476303363805 3.7794917734569173 >500 0.0014569873176586887 0.5239245514561779 >1k 4.2299626738635186E-4 0.4229952693410583 >5k 4.6999585265149585E-5 0.13474779664008604 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5375 0.13402576236970512 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.4935025557154443E-5 2 0.0 0.0 0.0 0.0 2.4935025557154443E-5 3 0.0 0.0 0.0 0.0 2.4935025557154443E-5 4 0.0 2.4935025557154443E-5 0.0 2.4935025557154443E-5 2.4935025557154443E-5 5 0.0 4.987005111430889E-5 0.0 2.4935025557154443E-5 2.4935025557154443E-5 6 0.0 4.987005111430889E-5 0.0 2.4935025557154443E-5 2.4935025557154443E-5 7 0.0 4.987005111430889E-5 0.0 2.4935025557154443E-5 2.4935025557154443E-5 8 0.0 4.987005111430889E-5 0.0 2.4935025557154443E-5 2.4935025557154443E-5 9 0.0 4.987005111430889E-5 0.0 2.4935025557154443E-5 2.4935025557154443E-5 10-11 0.0 4.987005111430889E-5 0.0 4.987005111430889E-5 2.4935025557154443E-5 12-13 0.0 4.987005111430889E-5 0.0 4.987005111430889E-5 9.974010222861777E-5 14-15 0.0 6.233756389288612E-5 0.0 4.987005111430889E-5 1.7454517890008113E-4 16-17 0.0 7.480507667146334E-5 0.0 4.987005111430889E-5 3.116878194644306E-4 18-19 0.0 7.480507667146334E-5 0.0 4.987005111430889E-5 3.6155787057873945E-4 20-21 0.0 7.480507667146334E-5 0.0 6.233756389288612E-5 4.987005111430889E-4 22-23 0.0 7.480507667146334E-5 0.0 1.4961015334292665E-4 5.485705622573978E-4 24-25 0.0 8.727258945004056E-5 0.0 2.4935025557154447E-4 5.485705622573978E-4 26-27 0.0 9.974010222861777E-5 0.0 4.2389543447162554E-4 5.735055878145522E-4 28-29 0.0 9.974010222861777E-5 0.0 8.477908689432512E-4 5.735055878145522E-4 30-31 0.0 9.974010222861777E-5 0.0 0.003029605605194265 5.735055878145522E-4 32-33 0.0 9.974010222861777E-5 0.0 0.007343365026581984 6.483106644860156E-4 34-35 0.0 9.974010222861777E-5 0.0 0.013477381313641977 7.480507667146333E-4 36-37 0.0 1.4961015334292668E-4 0.0 0.023401521485389445 7.480507667146333E-4 38-39 0.0 1.9948020445723557E-4 0.0 0.03730279823350305 8.103883306075194E-4 40-41 1.2467512778577222E-5 2.4935025557154447E-4 0.0 0.05319887702618901 8.228558433860967E-4 42-43 2.4935025557154443E-5 2.4935025557154447E-4 0.0 0.0681474248477031 8.353233561646739E-4 44-45 2.4935025557154443E-5 2.4935025557154447E-4 0.0 0.08495363207322519 9.101284328361372E-4 46-47 2.4935025557154443E-5 2.4935025557154447E-4 0.0 0.10194685199042594 9.849335095076005E-4 48-49 2.4935025557154443E-5 2.4935025557154447E-4 0.0 0.11900240947151958 0.0010846736117362185 50-51 2.4935025557154443E-5 2.4935025557154447E-4 0.0 0.13708030300045654 0.0010971411245147957 52-53 2.4935025557154443E-5 2.4935025557154447E-4 0.0 0.1545098858649075 0.0011968812267434134 54-55 2.4935025557154443E-5 2.4935025557154447E-4 0.0 0.17321115503277335 0.0011968812267434134 56-57 2.4935025557154443E-5 2.4935025557154447E-4 0.0 0.19177528156007484 0.0012592187906362994 58-59 2.4935025557154443E-5 2.4935025557154447E-4 0.0 0.2106760309323979 0.0013215563545291855 60-61 2.4935025557154443E-5 2.618177683501217E-4 0.0 0.22875392446133488 0.0014212964567578033 62-63 2.4935025557154443E-5 2.742852811286989E-4 0.0 0.24826558195980825 0.0014711665078721123 64-65 2.4935025557154443E-5 2.742852811286989E-4 0.0 0.2679891871755174 0.001521036558986421 66-67 2.4935025557154443E-5 2.742852811286989E-4 0.0 0.2892213614374344 0.0015584390973221527 68-69 4.987005111430889E-5 2.742852811286989E-4 0.0 0.31128885905551607 0.0015958416356578844 70-71 4.987005111430889E-5 2.742852811286989E-4 0.0 0.334441030285334 0.0016457116867721934 72-73 4.987005111430889E-5 2.9922030668585336E-4 0.0 0.35761813654070906 0.0018202568656722744 74-75 4.987005111430889E-5 2.9922030668585336E-4 0.0 0.37956095903100495 0.0019199969679008922 76-77 4.987005111430889E-5 3.7402538335731665E-4 0.0 0.40268819523526567 0.001957399506236624 78-79 4.987005111430889E-5 3.7402538335731665E-4 0.0 0.4265634822062411 0.001969867019015201 80-81 4.987005111430889E-5 3.7402538335731665E-4 0.0 0.4509624047139167 0.0019823345317937784 82-83 4.987005111430889E-5 3.7402538335731665E-4 0.0 0.4765457409355571 0.0022192172745867456 84-85 4.987005111430889E-5 3.7402538335731665E-4 0.0 0.503238685794491 0.0022192172745867456 86 4.987005111430889E-5 3.7402538335731665E-4 0.0 0.5229124209590859 0.0022441523001439 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 7140 0.0 42.35672 1 GGTATCA 4115 0.0 35.684204 1 TCAACGC 9290 0.0 31.977074 4 TATCAAC 9505 0.0 31.398457 2 ATCAACG 9505 0.0 31.350225 3 CAACGCA 9485 0.0 31.319664 5 AACGCAG 10115 0.0 29.54251 6 GTACATG 13955 0.0 26.68541 1 TACATGG 14570 0.0 24.8569 2 ACGCAGA 11905 0.0 24.749166 7 ACATGGG 14750 0.0 23.590069 3 CGCAGAG 12595 0.0 23.35344 8 GTACCTG 3970 0.0 22.030191 1 TACCTGG 4090 0.0 20.399878 2 CATGGGG 11940 0.0 20.195791 4 GTGTAGC 1845 0.0 19.959461 1 GCAGAGT 14490 0.0 19.729649 9 GAGTACA 11080 0.0 19.06901 1 GTATAGG 920 0.0 19.013012 1 AGTACAT 10070 0.0 18.983925 2 >>END_MODULE