##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921467_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3624174 Sequences flagged as poor quality 0 Sequence length 101 %GC 49 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.978351204991814 33.0 31.0 34.0 30.0 34.0 2 32.09281645969537 34.0 31.0 34.0 30.0 34.0 3 32.21643221324362 34.0 31.0 34.0 30.0 34.0 4 35.760776662489164 37.0 35.0 37.0 35.0 37.0 5 35.57044970798864 37.0 35.0 37.0 33.0 37.0 6 35.60662346785778 37.0 35.0 37.0 33.0 37.0 7 35.53910104757664 37.0 35.0 37.0 33.0 37.0 8 35.48835182858218 37.0 35.0 37.0 33.0 37.0 9 37.112634216789814 39.0 37.0 39.0 34.0 39.0 10-11 37.028318314738755 39.0 37.0 39.0 33.5 39.0 12-13 36.911822666351014 39.0 37.0 39.0 33.0 39.0 14-15 38.218795786295026 40.0 38.0 41.0 33.0 41.0 16-17 38.127279484925396 40.0 38.0 41.0 33.0 41.0 18-19 38.01826305800991 40.0 38.0 41.0 33.0 41.0 20-21 37.89954455829107 40.0 38.0 41.0 33.0 41.0 22-23 37.865649938441145 40.0 38.0 41.0 33.0 41.0 24-25 37.92131958896013 40.0 38.0 41.0 33.0 41.0 26-27 37.81590715567188 40.0 38.0 41.0 33.0 41.0 28-29 37.684766790998445 40.0 38.0 41.0 32.5 41.0 30-31 37.542230864191396 40.0 37.5 41.0 32.0 41.0 32-33 37.38482589412098 40.0 37.0 41.0 32.0 41.0 34-35 37.24312464026286 40.0 37.0 41.0 31.5 41.0 36-37 37.150555961165225 40.0 37.0 41.0 31.0 41.0 38-39 37.12062210589227 40.0 37.0 41.0 31.0 41.0 40-41 36.95668806188665 40.0 37.0 41.0 31.0 41.0 42-43 36.7175577110812 39.5 36.0 41.0 30.0 41.0 44-45 36.51269047788544 39.0 36.0 41.0 30.0 41.0 46-47 36.24841757045881 39.0 35.0 40.5 30.0 41.0 48-49 35.918018698881454 39.0 35.0 40.0 29.0 41.0 50-51 35.63750043458178 38.5 35.0 40.0 28.0 41.0 52-53 35.320666860917825 38.0 34.5 40.0 28.0 41.0 54-55 34.99029489202229 38.0 34.0 40.0 27.0 41.0 56-57 34.60555687999528 38.0 34.0 40.0 26.0 41.0 58-59 34.21716451803914 37.0 33.5 40.0 26.0 41.0 60-61 33.78357675431698 36.5 33.0 39.0 25.0 41.0 62-63 33.33643817874086 36.0 32.5 39.0 23.5 40.0 64-65 32.816669260361124 35.5 32.0 39.0 22.5 40.0 66-67 32.28280168115549 35.0 31.0 38.0 21.5 40.0 68-69 31.774080383557745 35.0 31.0 37.5 20.0 39.5 70-71 31.220931859231925 34.5 30.5 37.0 18.0 39.0 72-73 30.66895325665931 34.0 30.0 36.0 16.5 39.0 74-75 30.139721630363223 34.0 29.0 35.5 12.5 38.0 76-77 28.871106354165114 32.5 28.0 34.5 11.5 36.0 78-79 29.812990766999597 34.0 29.5 35.0 11.0 37.0 80-81 29.844525538784836 34.0 30.0 35.0 9.0 36.5 82-83 29.507212402053543 34.0 29.5 35.0 7.0 36.0 84-85 29.013778174005996 34.0 29.0 35.0 2.0 35.5 86-87 28.489646744334017 33.0 29.0 35.0 2.0 35.0 88-89 27.943049643863677 33.0 27.0 35.0 2.0 35.0 90-91 27.464087679013204 33.0 26.5 35.0 2.0 35.0 92-93 27.0174126573393 32.5 25.5 34.0 2.0 35.0 94-95 26.50808598041926 32.0 25.0 34.0 2.0 35.0 96-97 25.722419646518077 32.0 23.5 34.0 2.0 35.0 98-99 24.691859855514664 32.0 15.0 34.0 2.0 35.0 100-101 21.09676577338726 27.0 2.0 32.5 2.0 34.5 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 20696.0 3 11234.0 4 6767.0 5 5103.0 6 4725.0 7 4737.0 8 5339.0 9 6658.0 10 7831.0 11 9359.0 12 11234.0 13 13038.0 14 14439.0 15 16270.0 16 18752.0 17 21636.0 18 22486.0 19 20451.0 20 20437.0 21 21815.0 22 23568.0 23 25833.0 24 29875.0 25 35049.0 26 41571.0 27 50604.0 28 61449.0 29 74822.0 30 92363.0 31 115297.0 32 148282.0 33 197716.0 34 280866.0 35 422362.0 36 648390.0 37 780900.0 38 323537.0 39 8683.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.45088410656331 17.270730960696103 13.559824922378084 24.718560010362506 2 16.305756842800594 18.880660807124602 38.23662991898292 26.576952431091883 3 20.57790372962174 22.23953906776013 27.287883972229277 29.894673230388857 4 14.301387865084164 14.714047889213747 33.907390995856005 37.07717324984608 5 16.11462625418683 35.2127016432217 32.18800158160744 16.48467052098403 6 35.80176525742785 32.52260963006239 16.27835384002023 15.397271272489526 7 32.083505911849656 29.655063867857322 18.89107948552273 19.37035073477029 8 28.389150167534748 33.24013111102702 18.57385960778833 19.796859113649905 9 27.041072494812013 16.731522238050232 18.73159625349295 37.4958090136448 10-11 27.00064600000608 24.751632468805436 25.641753640067797 22.60596789112069 12-13 27.111043108039862 21.71000964854948 26.45336196090784 24.72558528250282 14-15 24.06369961189986 23.350671040644837 24.012331183755816 28.57329816369949 16-17 24.627171354747603 26.463236331226465 24.543302333399854 24.366289980626078 18-19 24.657995367940412 25.726190099935287 25.95824852886356 23.657566003260744 20-21 25.115964366892445 24.889258911347376 25.866888238543602 24.127888483216577 22-23 24.847144226288933 24.550955973120573 25.8755633925673 24.726336408023197 24-25 24.649813515872715 24.810276120716125 25.917408750435587 24.62250161297557 26-27 24.637356183690777 24.943941686659073 25.94704397096807 24.47165815868208 28-29 24.61640725832771 25.16309875842506 25.819178236442795 24.401315746804432 30-31 24.775614692607135 25.008640153639522 25.667071598418072 24.548673555335267 32-33 24.6049929552708 25.001062366134967 25.71091610177302 24.68302857682121 34-35 24.765594937068638 24.972001914507498 25.81873962877374 24.443663519650123 36-37 24.72476171172669 25.079512210131067 25.752725477532028 24.443000600610212 38-39 24.794639629321978 25.031694737045452 25.731890397198388 24.441775236434182 40-41 24.84039826437209 24.99080647086462 25.654272248512992 24.514523016250294 42-43 24.821656857667367 24.985989443311123 25.590906093260777 24.601447605760733 44-45 24.74357843971232 24.93821528800279 25.601548043193205 24.71665822909168 46-47 24.793393561805573 25.07544198487904 25.618894746632503 24.512269706682886 48-49 24.880528332562104 25.099149273981457 25.48091502369842 24.539407369758017 50-51 24.69437568477024 25.238632210377975 25.43649726561007 24.630494839241717 52-53 24.82929526662388 25.28012518439091 25.3139957186541 24.57658383033111 54-55 24.807693422048544 25.026565721981957 25.428038557065324 24.73770229890418 56-57 24.760472668187887 25.15725092641149 25.447808668968225 24.634467736432395 58-59 24.891474268174758 25.117679626383136 25.341939695770627 24.64890640967148 60-61 24.928938605880443 25.04985542134764 25.436902366156094 24.584303606615823 62-63 24.672884532807306 25.23041722641628 25.48416731886466 24.612530921911755 64-65 24.77426402981961 25.08403873811923 25.428913520261464 24.712783711799695 66-67 24.818606253426235 25.168516902203887 25.324709021961578 24.688167822408307 68-69 24.794605058468623 25.199424459319342 25.34416551363886 24.661804968573176 70-71 24.805459242026128 25.079348565627125 25.39625989985723 24.718932292489512 72-73 24.938928854686075 25.055364593460965 25.30091883075168 24.704787721101283 74-75 24.630355834013145 25.298778274234714 25.25880405870799 24.812061833044154 76-77 24.79130747623462 25.037996928143464 25.34393723449889 24.826758361123026 78-79 24.787493581905107 25.032288936660947 25.419162515757897 24.76105496567605 80-81 24.75684830411741 25.20138377207479 25.348251191589945 24.69351673221786 82-83 24.884927893114387 25.145321918997297 25.2790586567593 24.690691531129016 84-85 24.802531373784422 25.18760243930777 25.248676206096505 24.761189980811302 86-87 24.749800999649583 25.2248465697975 25.355662625241077 24.669689805311844 88-89 24.735752549971423 25.053050583650034 25.273823668056245 24.937373198322295 90-91 24.74640505070794 25.101513958048354 25.26383130268579 24.888249688557913 92-93 24.876173992017993 25.271326817155725 25.316944201174735 24.535554989651548 94-95 24.864196852923925 25.057262148398816 25.25591534101281 24.82262565766445 96-97 24.736302645134437 25.126535133134208 25.368988658506147 24.76817356322521 98-99 24.774551590187574 25.19111322305509 25.232574840979865 24.801760345777478 100-101 25.280083600125607 24.568878214131775 25.390130240253782 24.76090794548883 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 190.0 1 168.0 2 314.5 3 483.0 4 360.0 5 282.5 6 572.0 7 1314.5 8 1970.5 9 1886.0 10 1378.0 11 987.5 12 862.0 13 921.5 14 996.5 15 1043.0 16 1129.0 17 1193.0 18 1237.5 19 1301.5 20 1374.0 21 1467.0 22 1559.5 23 1688.0 24 1867.0 25 2156.0 26 2528.0 27 3057.5 28 3900.0 29 5282.5 30 7541.5 31 10444.0 32 14391.5 33 19469.5 34 25284.5 35 32228.5 36 40855.0 37 50154.0 38 59535.5 39 69330.5 40 79118.0 41 88688.5 42 98900.0 43 110290.0 44 122496.5 45 134676.5 46 143883.5 47 153480.5 48 166714.0 49 172536.0 50 168894.0 51 165718.5 52 165446.5 53 164901.5 54 163249.0 55 158001.5 56 147931.5 57 136610.5 58 125581.0 59 114337.0 60 100175.0 61 84547.5 62 69262.5 63 52911.0 64 38921.0 65 29456.0 66 22598.5 67 17692.0 68 13673.0 69 10479.0 70 8050.5 71 6192.5 72 4646.0 73 3435.5 74 2648.0 75 1972.0 76 1373.0 77 894.0 78 566.5 79 293.0 80 140.0 81 84.0 82 51.5 83 22.5 84 12.0 85 6.5 86 2.5 87 2.5 88 1.5 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.30760112511154264 2 0.0 3 0.005904793754383757 4 0.05695090798620596 5 3.587024243317236E-4 6 0.06252459181043735 7 0.07267862966844307 8 0.10294759578320467 9 0.09127597074533397 10-11 0.09466984752939565 12-13 0.09443531132887108 14-15 0.06344894036544603 16-17 0.034849320148535916 18-19 0.03806384572043175 20-21 0.026778515601072136 22-23 0.040781706397099035 24-25 0.0334283066982987 26-27 0.019728633338244796 28-29 0.022970751404319992 30-31 0.002938600630102197 32-33 0.005187388905720311 34-35 0.0073258072046209705 36-37 0.009919501657481126 38-39 0.015010316833573664 40-41 0.019356134666823392 42-43 0.0033386917957029657 44-45 0.013865228325130085 46-47 0.023729544994252484 48-49 0.0025661019586807918 50-51 0.006608402355957523 52-53 0.002207399534349068 54-55 0.003945726667648959 56-57 0.003021378112640287 58-59 9.243485550086722E-4 60-61 0.005380536364975853 62-63 0.014624021915062577 64-65 0.006898123544840838 66-67 0.03840875189767379 68-69 0.060386173511536696 70-71 0.0123476411452651 72-73 0.03160720208246072 74-75 0.05074259679584921 76-77 0.29590190757949264 78-79 0.07111965374730904 80-81 0.03251775439037971 82-83 0.02789601161533635 84-85 0.018956043501222625 86-87 0.11604023427131258 88-89 0.5211808263069047 90-91 0.1302641650207744 92-93 0.04556900413721857 94-95 0.007463769675517787 96-97 0.004980445199375085 98-99 0.00939524426807322 100-101 0.007063678509917019 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 3624174.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 53.01161303153763 #Duplication Level Percentage of deduplicated Percentage of total 1 72.50433957371581 38.43571992589022 2 15.139263535313932 16.05113560233061 3 5.092525056216399 8.098889029006594 4 2.358720789256026 5.001583749179337 5 1.234986164974515 3.2734304338465843 6 0.8014793586261044 2.549262816735121 7 0.5361187015782755 1.9894362002926558 8 0.38811610162319815 1.645972847244633 9 0.2959275957299616 1.4118839271171029 >10 1.5231543975759552 14.459614725984594 >50 0.08941549365858979 3.2216900685589134 >100 0.034494980985989306 3.033535262543937 >500 0.001145768445674664 0.42412410431812103 >1k 3.1248229946845204E-4 0.4037213069515621 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4208 0.11610921550676098 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 2.7592494179363354E-5 0.0 5 0.0 0.0 0.0 2.7592494179363354E-5 0.0 6 0.0 0.0 0.0 2.7592494179363354E-5 0.0 7 0.0 0.0 0.0 2.7592494179363354E-5 0.0 8 0.0 0.0 0.0 2.7592494179363354E-5 2.7592494179363354E-5 9 0.0 0.0 0.0 2.7592494179363354E-5 2.7592494179363354E-5 10-11 0.0 0.0 0.0 5.518498835872671E-5 2.7592494179363354E-5 12-13 0.0 0.0 0.0 6.898123544840838E-5 9.657372962777175E-5 14-15 0.0 1.3796247089681677E-5 0.0 9.657372962777175E-5 1.3796247089681676E-4 16-17 0.0 2.7592494179363354E-5 0.0 1.5175871798649843E-4 1.6555496507618012E-4 18-19 0.0 2.7592494179363354E-5 0.0 2.2073995343490683E-4 1.9314745925554347E-4 20-21 0.0 2.7592494179363354E-5 0.0 2.345362005245885E-4 2.2073995343490683E-4 22-23 0.0 2.7592494179363354E-5 0.0 3.173136830626785E-4 2.2073995343490683E-4 24-25 0.0 2.7592494179363354E-5 0.0 3.587024243317236E-4 2.2073995343490683E-4 26-27 0.0 2.7592494179363354E-5 0.0 4.4147990686981367E-4 2.345362005245885E-4 28-29 0.0 2.7592494179363354E-5 0.0 9.38144802098354E-4 2.483324476142702E-4 30-31 0.0 2.7592494179363354E-5 0.0 0.0028972118888331523 2.483324476142702E-4 32-33 0.0 2.7592494179363354E-5 0.0 0.006567013614688477 2.483324476142702E-4 34-35 0.0 2.7592494179363354E-5 0.0 0.011740606273319108 3.0351743597299685E-4 36-37 0.0 2.7592494179363354E-5 0.0 0.01891465475995358 3.173136830626785E-4 38-39 0.0 2.7592494179363354E-5 0.0 0.030324151103120325 3.3110993015236025E-4 40-41 0.0 2.7592494179363354E-5 0.0 0.04232688607114338 3.587024243317236E-4 42-43 0.0 5.518498835872671E-5 0.0 0.05472971220476721 3.587024243317236E-4 44-45 0.0 5.518498835872671E-5 0.0 0.06775336945742672 3.7249867142140526E-4 46-47 0.0 5.518498835872671E-5 0.0 0.08234979887830993 4.000911656007686E-4 48-49 0.0 5.518498835872671E-5 0.0 0.09598049100291542 4.4147990686981367E-4 50-51 0.0 5.518498835872671E-5 0.0 0.11038377296454309 4.69072401049177E-4 52-53 0.0 5.518498835872671E-5 0.0 0.12492501739706757 5.242573894079037E-4 54-55 0.0 9.657372962777175E-5 0.0 0.14003190796026901 5.51849883587267E-4 56-57 0.0 1.1036997671745342E-4 0.0 0.15512500227638076 5.51849883587267E-4 58-59 0.0 1.3796247089681676E-4 0.0 0.17132179635966704 5.51849883587267E-4 60-61 0.0 1.3796247089681676E-4 0.0 0.18728405424242878 5.51849883587267E-4 62-63 0.0 1.3796247089681676E-4 0.0 0.20303936841884523 5.794423777666304E-4 64-65 0.0 1.3796247089681676E-4 0.0 0.22009152982169178 5.794423777666304E-4 66-67 0.0 1.3796247089681676E-4 0.0 0.23706091374200022 6.208311190356755E-4 68-69 0.0 1.3796247089681676E-4 0.0 0.25444418507499916 6.622198603047205E-4 70-71 0.0 2.2073995343490683E-4 0.0 0.2726000462450202 6.622198603047205E-4 72-73 0.0 2.759249417936335E-4 0.0 0.29060414869705486 8.415710724705822E-4 74-75 0.0 2.759249417936335E-4 0.0 0.3104431520120171 9.38144802098354E-4 76-77 0.0 3.587024243317236E-4 0.0 0.33126168887034674 9.38144802098354E-4 78-79 0.0 3.587024243317236E-4 0.0 0.3526458718593533 9.38144802098354E-4 80-81 0.0 4.0009116560076865E-4 0.0 0.37415422107216706 9.657372962777174E-4 82-83 0.0 4.4147990686981367E-4 0.0 0.3959522914738641 0.0010485147788158074 84-85 0.0 4.4147990686981367E-4 0.0 0.41859193294803176 0.0010485147788158074 86-87 0.0 4.4147990686981367E-4 0.0 0.4409556494804057 0.0011174960142642156 88-89 0.0 4.4147990686981367E-4 0.0 0.46334695850695906 0.0012002734968023059 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTACCTG 4600 0.0 31.05683 1 GTATCAA 9365 0.0 28.22142 1 TACCTGG 5010 0.0 27.962917 2 GTACATG 11615 0.0 23.902487 1 TCAACGC 11265 0.0 23.018534 4 TATCAAC 11430 0.0 22.809946 2 TACATGG 11900 0.0 22.587473 2 CAACGCA 11610 0.0 22.407354 5 ATCAACG 11650 0.0 22.21676 3 ACCTGGG 6215 0.0 21.930622 3 AACGCAG 12390 0.0 21.188883 6 ACATGGG 12120 0.0 21.041748 3 GAGTACA 8905 0.0 20.374395 1 GGTATCA 6650 0.0 19.621067 1 GTATACG 170 7.806448E-5 19.60843 1 AGTACAT 8475 0.0 19.388071 2 CATGGGG 9750 0.0 18.850485 4 ACGCAGA 13990 0.0 18.631115 7 AGAGTAC 10990 0.0 18.035492 10-11 CGCAGAG 14760 0.0 17.594833 8 >>END_MODULE