##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921462_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3695185 Sequences flagged as poor quality 0 Sequence length 98 %GC 48 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.121426126161477 31.0 31.0 34.0 26.0 34.0 2 30.21342936821837 31.0 31.0 34.0 26.0 34.0 3 30.347585303577493 31.0 31.0 34.0 26.0 34.0 4 33.84602584173729 37.0 35.0 37.0 30.0 37.0 5 33.822591291099094 37.0 35.0 37.0 30.0 37.0 6 33.92499590683552 37.0 35.0 37.0 30.0 37.0 7 33.803785466762825 37.0 35.0 37.0 30.0 37.0 8 33.78092680068792 37.0 35.0 37.0 29.0 37.0 9 35.201326320603705 39.0 35.0 39.0 29.0 39.0 10-11 35.065510387166 39.0 35.0 39.0 29.0 39.0 12-13 34.894213550877694 39.0 35.0 39.0 27.5 39.0 14-15 35.85595741485203 39.5 36.0 41.0 27.0 41.0 16-17 35.70098574225648 39.0 36.0 41.0 27.0 41.0 18-19 35.52076269523718 39.0 36.0 40.5 27.0 41.0 20-21 35.397637466053794 39.0 36.0 40.0 27.0 41.0 22-23 35.438622829438856 39.0 36.0 41.0 26.5 41.0 24-25 35.29002891600827 39.0 35.5 41.0 25.5 41.0 26-27 34.999026976998444 39.0 35.0 40.0 24.5 41.0 28-29 34.75179578289044 39.0 34.5 40.0 24.0 41.0 30-31 34.48383734508556 38.0 34.0 40.0 22.5 41.0 32-33 34.18775825838219 38.0 34.0 40.0 20.0 41.0 34-35 33.746922278586865 38.0 33.0 40.0 17.0 41.0 36-37 33.34507473915379 38.0 33.0 40.0 15.0 41.0 38-39 33.09049979906284 38.0 32.5 40.0 11.5 41.0 40-41 32.81603695078866 38.0 32.0 40.0 9.0 41.0 42-43 32.50849740946664 37.5 31.0 40.0 8.5 41.0 44-45 32.17863354608768 37.0 31.0 40.0 8.0 41.0 46-47 31.856597166312376 37.0 30.5 40.0 6.5 41.0 48-49 31.610740192980863 37.0 30.0 40.0 2.0 41.0 50-51 30.895242457414177 36.0 29.5 38.5 2.0 39.5 52-53 31.45374602354145 36.5 30.5 39.0 2.0 40.0 54-55 31.881132203123798 37.0 31.0 39.5 2.0 40.5 56-57 31.722719972071765 37.0 31.0 40.0 2.0 41.0 58-59 31.382748766299926 36.0 31.0 39.0 2.0 41.0 60-61 30.902829763597765 36.0 30.0 39.0 2.0 40.0 62-63 30.407717746202152 35.0 29.0 39.0 2.0 40.0 64-65 29.85521983337776 35.0 28.5 38.0 2.0 40.0 66-67 29.346532852888288 34.5 28.0 38.0 2.0 40.0 68-69 28.807521003684524 34.0 26.5 37.0 2.0 39.5 70-71 28.25842062034783 34.0 26.0 36.5 2.0 39.0 72-73 27.680259445738173 33.5 26.0 36.0 2.0 39.0 74-75 27.06122291576741 33.0 24.5 35.0 2.0 38.0 76-77 26.450951711484 32.5 23.5 35.0 2.0 37.0 78-79 25.852892886283094 32.0 21.0 35.0 2.0 36.5 80-81 25.22838897105287 32.0 19.0 35.0 2.0 36.0 82-83 24.559490120251084 31.0 14.5 34.0 2.0 35.5 84-85 23.905293645649678 31.0 7.0 34.0 2.0 35.0 86-87 23.255295201728735 30.0 2.0 34.0 2.0 35.0 88-89 22.559543297561554 30.0 2.0 34.0 2.0 35.0 90-91 21.768840125731188 29.0 2.0 34.0 2.0 35.0 92-93 20.91265457615789 29.0 2.0 34.0 2.0 35.0 94-95 19.972951286606758 27.5 2.0 33.0 2.0 34.5 96-97 19.059109489781974 26.0 2.0 33.0 2.0 34.0 98 18.43079954048309 25.0 2.0 32.0 2.0 34.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 133995.0 3 22587.0 4 17034.0 5 14470.0 6 13540.0 7 14253.0 8 16117.0 9 18704.0 10 20981.0 11 22948.0 12 24977.0 13 27885.0 14 24208.0 15 24643.0 16 27652.0 17 31889.0 18 35515.0 19 34810.0 20 35779.0 21 39215.0 22 42734.0 23 47530.0 24 52401.0 25 58347.0 26 65906.0 27 74969.0 28 85573.0 29 99836.0 30 117682.0 31 140390.0 32 172244.0 33 219083.0 34 287432.0 35 389615.0 36 504576.0 37 509513.0 38 216758.0 39 9394.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.16939235975613 17.091929901658585 13.053930189370384 24.684747549214897 2 15.908821994837682 18.754567388594978 39.1268195433735 26.209791073193834 3 21.054176462209917 21.849355240690105 27.401471863300518 29.69499643379946 4 13.752604854886297 14.340673861337239 35.099796810487874 36.806924473288596 5 15.330264938790078 35.920580647991635 32.958440729850395 15.790713683367896 6 35.19719017373208 33.224137534171646 16.368023332173404 15.210648959922876 7 31.416025999932856 30.257383957105745 18.922726873997576 19.403863168963824 8 27.771380746433405 33.73783503887753 18.58786029316629 19.90292392152277 9 26.591826493929982 17.027280566473543 19.06375533937908 37.31713760021739 10-11 26.793453827555062 25.012809176160882 25.80838555119516 22.385351445088897 12-13 27.051895413179 21.950790425924797 26.463113795160886 24.534200365735312 14-15 23.73969311019061 23.703803047461495 24.40252248136207 28.153981360985824 16-17 24.021857515286943 26.9704676159296 24.92154885326266 24.086126015520794 18-19 24.01276540495109 26.273030577374364 26.422010846424275 23.292193171250275 20-21 24.560692637268865 25.287216380891454 26.352902810876444 23.799188170963237 22-23 24.219083015218967 25.018370334290648 26.359076272544378 24.40347037794601 24-25 24.10956073527056 25.251726755973625 26.469084808839867 24.169627699915953 26-27 24.13470687768032 25.295012915914246 26.623170313197036 23.9471098932084 28-29 23.95345482912242 25.77285799510956 26.33802807363964 23.935659102128376 30-31 24.245586666939257 25.39052752847256 26.25339308805843 24.110492716529755 32-33 24.01873033667258 25.50045676649926 26.276560508329883 24.204252388498283 34-35 24.330681306683452 25.443002667152882 26.371961512892916 23.854354513270753 36-37 24.295004081308043 25.363484263200654 26.357133655280496 23.984378000210807 38-39 24.155019927921384 25.577563999783315 26.348574883441874 23.91884118885343 40-41 24.269913594136064 25.586661872238658 26.20550511758008 23.9379194160452 42-43 24.161918074349494 25.471553960196047 26.07865353375139 24.287874431703067 44-45 24.233871077456374 25.3586034071337 26.14001028507059 24.267515230339328 46-47 24.4192419453067 25.576439038411497 26.02794287907122 23.97637613721059 48-49 24.366775721826777 25.615807099543968 25.931057352640536 24.086359825988715 50-51 24.03154125335453 25.74558069978279 26.079581481457804 24.14329656540488 52-53 24.23188884091931 25.927166388039208 25.818942119689858 24.022002651351617 54-55 24.063023887322363 25.539956546232613 26.06674806818836 24.330271498256664 56-57 24.24047956708138 25.592942107365474 25.967892993697124 24.198685331856023 58-59 24.487689588176696 25.5900172851207 25.89611136470843 24.02618176199417 60-61 24.349092652345668 25.553443502598515 26.1284863101014 23.968977534954416 62-63 24.084666876824567 25.725313464749593 26.078142004609777 24.11187765381606 64-65 24.0849874917537 25.730001502295902 26.010647794346575 24.17436321160382 66-67 24.183251807899154 25.65311883956892 25.84506669378056 24.318562658751368 68-69 24.0571106945208 25.683295857892368 25.937331593504187 24.322261854082647 70-71 24.257996316055564 25.478870623276293 25.988764866929543 24.2743681937386 72-73 24.347890754018714 25.39491728595083 26.040035070827543 24.217156889202915 74-75 24.064664166429814 25.87867476300829 25.856274032700988 24.200387037860903 76-77 24.162371624553682 25.479881910359325 25.900558582054245 24.457187883032745 78-79 24.173317819979573 25.400955351801187 26.05822020833189 24.36750661988735 80-81 24.273723184866988 25.590091628835182 25.857921815552366 24.278263370745464 82-83 24.345864089180512 25.49575321177381 25.88104370242163 24.27733899662405 84-85 24.252619572577526 25.53370724667543 25.881801123153554 24.331872057593493 86-87 24.217219958041873 25.629443269879648 25.885011352616132 24.268325419462347 88-89 24.18927559565333 25.398997694569708 25.79834547954432 24.61338123023264 90-91 24.281515136356617 25.268629822069784 25.854308625515728 24.59554641605787 92-93 24.38498850398164 25.537635102852498 25.900940546249473 24.176435846916398 94-95 24.46758573569273 25.31264329158503 25.854400184228883 24.36537078849336 96-97 24.18622461671384 25.40809410544179 26.020870754816748 24.38481052302762 98 24.37915303672737 25.522260127340534 25.59117440531871 24.507412430613382 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 642.0 1 453.0 2 447.0 3 650.5 4 575.5 5 555.5 6 941.5 7 1860.5 8 2641.5 9 2606.5 10 2069.5 11 1743.5 12 1862.5 13 2066.5 14 2328.5 15 2668.5 16 2943.5 17 3047.5 18 3071.5 19 3064.0 20 2949.0 21 2816.5 22 2854.5 23 3131.0 24 3460.0 25 4162.5 26 5429.0 27 7172.0 28 9392.0 29 12368.0 30 16347.0 31 21730.0 32 28455.5 33 35710.5 34 43755.5 35 52664.0 36 61752.5 37 70690.0 38 79629.5 39 87764.5 40 96134.0 41 105967.5 42 116257.5 43 127189.0 44 137045.5 45 146256.5 46 161037.5 47 176645.0 48 180194.5 49 172378.0 50 166931.0 51 164241.0 52 160747.0 53 159542.5 54 156225.0 55 148134.0 56 137146.5 57 126126.0 58 115283.0 59 103387.0 60 89748.0 61 75002.5 62 60662.0 63 46753.0 64 34877.0 65 26533.5 66 20368.0 67 15518.5 68 11889.0 69 9205.0 70 6909.0 71 5251.5 72 4081.5 73 3000.5 74 2280.0 75 1744.5 76 1237.5 77 768.5 78 475.5 79 293.5 80 171.0 81 103.0 82 59.5 83 35.0 84 25.5 85 19.5 86 13.5 87 11.0 88 10.0 89 10.0 90 10.0 91 5.0 92 4.5 93 4.5 94 4.5 95 4.5 96 3.0 97 2.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.4842518033603189 2 0.050931144178167 3 0.05896863079926986 4 0.05631653083675107 5 0.06719555313198122 6 0.06576125417265982 7 0.04430089427187001 8 0.020648492565324875 9 0.012638068188737507 10-11 0.01537135488480279 12-13 0.011812669731014821 14-15 0.01539841712931829 16-17 0.014315927348698373 18-19 0.056248875225462326 20-21 0.08528666359059153 22-23 0.10206525519020021 24-25 0.07143079439865663 26-27 0.08735692529602712 28-29 0.08896712884469925 30-31 0.05952340681183757 32-33 0.03476145308015702 34-35 0.40711087536889223 36-37 0.6378029787412538 38-39 0.5871424570082417 40-41 0.5811887632148323 42-43 0.5547624814454486 44-45 0.54002708930676 46-47 0.5298652164911906 48-49 0.5200416217320649 50-51 0.5343304868362477 52-53 0.6148136020253383 54-55 0.5852345687698992 56-57 0.5422461933570308 58-59 0.5193515344969196 60-61 0.5336539307233603 62-63 0.5458590029998498 64-65 0.5631382461229951 66-67 0.5897269013594718 68-69 0.5442623305734354 70-71 0.49112561346725536 72-73 0.4731698142312225 74-75 0.45284606860008364 76-77 0.4682038923626287 78-79 0.4617766092901979 80-81 0.4579337705689972 82-83 0.47900172792431234 84-85 0.444795050856723 86-87 0.4470006237847361 88-89 0.47530773154794687 90-91 0.4570542476222435 92-93 0.4529543175781456 94-95 0.46415808680756176 96-97 0.45810967515834794 98 0.45199360789784543 >>END_MODULE >>Sequence Length Distribution pass #Length Count 98 3695185.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 57.32956958940273 #Duplication Level Percentage of deduplicated Percentage of total 1 75.4142426703013 43.234660731991426 2 13.751220366843725 15.767030899203588 3 4.747792826041441 8.165667576498295 4 2.089907440782676 4.7925397624704384 5 1.099031399056314 3.1503498536568793 6 0.6644226344184868 2.285463819400136 7 0.43890417488825406 1.7613531206134883 8 0.3082049984695871 1.4135407926051162 9 0.21616166018613384 1.1153209446181607 >10 1.1793751448651169 12.010616145610168 >50 0.06613539721765858 2.579862654575894 >100 0.022892199735352753 2.1413873132525527 >500 9.020182504580354E-4 0.3627483009067798 >1k 7.121196560565382E-4 0.8516746430803057 >5k 9.494928747420494E-5 0.3677834415168145 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT 8184 0.2214774091148346 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5329 0.14421470102308817 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.7062244515497872E-5 2 0.0 0.0 0.0 2.7062244515497872E-5 2.7062244515497872E-5 3 0.0 0.0 0.0 2.7062244515497872E-5 2.7062244515497872E-5 4 0.0 0.0 0.0 2.7062244515497872E-5 2.7062244515497872E-5 5 0.0 0.0 0.0 2.7062244515497872E-5 2.7062244515497872E-5 6 0.0 0.0 0.0 2.7062244515497872E-5 2.7062244515497872E-5 7 0.0 0.0 0.0 2.7062244515497872E-5 2.7062244515497872E-5 8 0.0 0.0 0.0 2.7062244515497872E-5 5.4124489030995744E-5 9 0.0 0.0 0.0 2.7062244515497872E-5 5.4124489030995744E-5 10-11 0.0 2.7062244515497872E-5 0.0 8.118673354649361E-5 5.4124489030995744E-5 12-13 0.0 2.7062244515497872E-5 0.0 8.118673354649361E-5 2.4356020063948087E-4 14-15 0.0 5.4124489030995744E-5 0.0 8.118673354649361E-5 3.2474693418597445E-4 16-17 0.0 8.118673354649361E-5 0.0 8.118673354649361E-5 3.653403009592212E-4 18-19 0.0 8.118673354649361E-5 0.0 8.118673354649361E-5 4.0593366773246804E-4 20-21 0.0 8.118673354649361E-5 0.0 1.3531122257748936E-4 4.0593366773246804E-4 22-23 0.0 1.0824897806199149E-4 0.0 1.894357116084851E-4 4.329959122479659E-4 24-25 0.0 1.0824897806199149E-4 0.0 2.4356020063948084E-4 4.600581567634638E-4 26-27 0.0 1.0824897806199149E-4 0.0 3.382780564437234E-4 4.871204012789617E-4 28-29 0.0 1.0824897806199149E-4 0.0 7.712739686916893E-4 4.871204012789617E-4 30-31 0.0 1.0824897806199149E-4 0.0 0.002300290783817319 4.871204012789617E-4 32-33 0.0 1.0824897806199149E-4 0.0 0.00610253613824477 4.871204012789617E-4 34-35 2.7062244515497872E-5 1.0824897806199149E-4 0.0 0.010906084539745642 5.141826457944595E-4 36-37 2.7062244515497872E-5 1.2178010031974043E-4 0.0 0.018497044126342795 5.277137680522085E-4 38-39 2.7062244515497872E-5 1.894357116084851E-4 0.0 0.030093215901233632 5.683071348254554E-4 40-41 2.7062244515497872E-5 2.1649795612398298E-4 0.0 0.04256891062287815 5.953693793409532E-4 42-43 2.7062244515497872E-5 2.1649795612398298E-4 0.0 0.05476045177710994 6.089005015987021E-4 44-45 2.7062244515497872E-5 2.1649795612398298E-4 0.0 0.06826451179034337 6.359627461141999E-4 46-47 2.7062244515497872E-5 2.1649795612398298E-4 0.0 0.08260750138355724 6.630249906296979E-4 48-49 2.7062244515497872E-5 2.1649795612398298E-4 0.0 0.0958950634406667 7.036183574029446E-4 50-51 2.7062244515497872E-5 2.1649795612398298E-4 0.0 0.10989977497743686 7.306806019184425E-4 52-53 2.7062244515497872E-5 2.1649795612398298E-4 0.0 0.12349855284647454 7.712739686916893E-4 54-55 2.7062244515497872E-5 2.300290783817319E-4 0.0 0.13861281640838008 7.848050909494383E-4 56-57 2.7062244515497872E-5 2.7062244515497873E-4 0.0 0.1561762130989382 7.848050909494383E-4 58-59 2.7062244515497872E-5 2.7062244515497873E-4 0.0 0.17250827766404117 7.848050909494383E-4 60-61 2.7062244515497872E-5 2.976846896704766E-4 0.0 0.18783903918207073 7.848050909494383E-4 62-63 2.7062244515497872E-5 2.976846896704766E-4 0.0 0.20427935272523567 8.659918244959319E-4 64-65 2.7062244515497872E-5 2.976846896704766E-4 0.0 0.22017842137809068 9.201163135269276E-4 66-67 2.7062244515497872E-5 2.976846896704766E-4 0.0 0.23747119562349384 9.201163135269276E-4 68-69 2.7062244515497872E-5 2.976846896704766E-4 0.0 0.2549939989472787 9.201163135269276E-4 70-71 2.7062244515497872E-5 3.518091787014723E-4 0.0 0.272922735938796 9.607096803001744E-4 72-73 2.7062244515497872E-5 4.0593366773246804E-4 0.0 0.29089206629708664 0.0011772076364241573 74-75 2.7062244515497872E-5 4.0593366773246804E-4 0.0 0.3105392558153381 0.0012178010031974043 76-77 2.7062244515497872E-5 4.3299591224796595E-4 0.0 0.33044353665648674 0.0012178010031974043 78-79 2.7062244515497872E-5 4.3299591224796595E-4 1.3531122257748936E-5 0.35120027819987365 0.001244863247712902 80-81 2.7062244515497872E-5 4.4652703450571486E-4 4.0593366773246806E-5 0.37276888707872546 0.0012719254922283999 82-83 2.7062244515497872E-5 4.871204012789617E-4 5.4124489030995744E-5 0.39417512249048425 0.0013531122257748936 84-85 2.7062244515497872E-5 4.871204012789617E-4 6.765561128874468E-5 0.4162037895260995 0.0013531122257748936 86 2.7062244515497872E-5 4.871204012789617E-4 8.118673354649361E-5 0.4334559704047294 0.0013531122257748936 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTACATG 11580 0.0 25.361456 1 TACATGG 11845 0.0 24.535166 2 GTACCTG 3675 0.0 22.671658 1 ACATGGG 12370 0.0 22.567446 3 GAGTACA 8840 0.0 21.1415 1 AGTACAT 8375 0.0 20.634377 2 TACCTGG 3820 0.0 20.39954 2 GTGTAGC 1955 0.0 19.072178 1 CATGGGG 9405 0.0 18.667011 4 GTATCAA 16265 0.0 18.33931 1 TCGCGTA 155 0.0012280614 17.732828 9 AGAGTAC 11210 0.0 17.633062 10-11 GTACTTT 6055 0.0 16.730427 14-15 GAGTACT 6210 0.0 16.270536 12-13 TATCAAC 18175 0.0 16.267475 2 TCAACGC 18195 0.0 16.249594 4 GTATAGG 800 0.0 16.111282 1 CAACGCA 18355 0.0 16.107944 5 ATCAACG 18495 0.0 16.060368 3 GTACACG 865 0.0 15.964937 1 >>END_MODULE