##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921454_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4637656 Sequences flagged as poor quality 0 Sequence length 98 %GC 49 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.610968773880597 31.0 30.0 34.0 26.0 34.0 2 29.687919069460953 31.0 30.0 34.0 25.0 34.0 3 29.814028681730598 31.0 31.0 34.0 25.0 34.0 4 33.28891038921386 37.0 35.0 37.0 27.0 37.0 5 33.237180161702376 37.0 35.0 37.0 27.0 37.0 6 33.33445796755947 37.0 35.0 37.0 28.0 37.0 7 33.19340675548165 37.0 35.0 37.0 27.0 37.0 8 33.157219509165834 37.0 35.0 37.0 27.0 37.0 9 34.51348978880711 38.0 35.0 39.0 27.0 39.0 10-11 34.35099444633237 38.0 35.0 39.0 27.0 39.0 12-13 34.1483059545598 38.0 35.0 39.0 25.5 39.0 14-15 35.033422056314656 39.0 35.0 40.5 25.0 41.0 16-17 34.846073318072754 39.0 34.5 40.0 24.5 41.0 18-19 34.62366947871942 39.0 34.0 40.0 22.5 41.0 20-21 34.48185182342114 39.0 34.0 40.0 21.5 41.0 22-23 34.50050833869524 39.0 34.0 40.0 20.5 41.0 24-25 34.32860533424644 39.0 34.0 40.0 18.5 41.0 26-27 34.00373108742865 38.0 34.0 40.0 17.5 41.0 28-29 33.71771019670281 38.0 33.0 40.0 16.0 41.0 30-31 33.41341196932244 38.0 33.0 40.0 12.5 41.0 32-33 33.09268399812319 38.0 32.5 40.0 9.0 41.0 34-35 32.62687519298542 38.0 31.5 40.0 8.5 41.0 36-37 32.19311026949821 38.0 31.0 40.0 7.0 41.0 38-39 31.909791929371217 37.0 30.0 40.0 2.0 41.0 40-41 31.591113053663317 37.0 30.0 40.0 2.0 41.0 42-43 31.255469142170096 37.0 30.0 40.0 2.0 41.0 44-45 30.885594576225575 36.0 29.5 39.0 2.0 40.0 46-47 30.548122262625775 36.0 28.5 39.0 2.0 40.0 48-49 30.277167280194995 36.0 28.0 39.0 2.0 40.0 50-51 29.597574076214364 35.0 27.0 38.5 2.0 39.5 52-53 30.192386196820117 35.5 28.5 38.5 2.0 40.0 54-55 30.5802797792678 36.0 29.0 39.0 2.0 40.0 56-57 30.393884000883205 36.0 29.0 39.0 2.0 40.0 58-59 30.014561989936297 35.5 28.0 39.0 2.0 40.0 60-61 29.51030078556926 35.0 27.5 39.0 2.0 40.0 62-63 28.96956242550116 34.5 26.5 38.0 2.0 40.0 64-65 28.375672430210432 34.0 26.0 38.0 2.0 40.0 66-67 27.843256054351595 34.0 25.0 37.0 2.0 39.5 68-69 27.27826514083839 33.5 23.5 36.5 2.0 39.0 70-71 26.710546879716823 33.0 22.0 36.0 2.0 39.0 72-73 26.10943459368267 32.5 20.0 35.0 2.0 38.0 74-75 25.46431721110837 32.0 18.0 35.0 2.0 37.0 76-77 24.822291692182432 31.5 11.5 35.0 2.0 36.5 78-79 24.206486099874592 31.0 7.0 34.5 2.0 36.0 80-81 23.565544102451756 31.0 2.0 34.0 2.0 35.5 82-83 22.878878791354943 30.0 2.0 34.0 2.0 35.0 84-85 22.19468153739734 29.5 2.0 34.0 2.0 35.0 86-87 21.501515420721155 29.0 2.0 34.0 2.0 35.0 88-89 20.78645009461676 29.0 2.0 34.0 2.0 35.0 90-91 19.985217963557453 27.0 2.0 33.0 2.0 35.0 92-93 19.110150256940145 25.5 2.0 33.0 2.0 34.0 94-95 18.152370076607667 24.5 2.0 32.5 2.0 34.0 96-97 17.234452382841674 21.5 2.0 32.0 2.0 34.0 98 16.619700555625514 18.0 2.0 32.0 2.0 34.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 215337.0 3 36049.0 4 27262.0 5 22978.0 6 21660.0 7 22829.0 8 26004.0 9 29801.0 10 33568.0 11 35995.0 12 38697.0 13 40984.0 14 36772.0 15 37191.0 16 41270.0 17 46860.0 18 51630.0 19 51923.0 20 54318.0 21 59064.0 22 63500.0 23 69688.0 24 76548.0 25 84406.0 26 93773.0 27 105366.0 28 118849.0 29 135818.0 30 157067.0 31 185223.0 32 223232.0 33 276342.0 34 353791.0 35 460906.0 36 570269.0 37 527088.0 38 197994.0 39 7604.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.08339721737782 16.509767164590354 12.408487324748501 24.998348293283325 2 16.29344457260902 18.32818361987715 38.92212610718121 26.456245700332627 3 20.869949797312312 22.224257369137536 26.914357709790927 29.991435123759224 4 13.963832093758258 14.006698559432188 33.93194651939184 38.09752282741771 5 15.672770321862108 35.1784180494266 32.349796855275216 16.79901477343608 6 35.75712763384413 32.256382296329974 16.698429904291714 15.288060165534187 7 32.25412396307718 29.37942962557746 18.746775120409886 19.61967129093548 8 28.814357651166116 33.48287602470927 18.257536496590433 19.445229827534185 9 27.426909563928735 16.351917521433506 18.37044966587106 37.85072324876669 10-11 27.350480158550443 24.6030200495578 25.49625728648418 22.55024250540758 12-13 27.23017502099603 21.484967231747095 26.373060475355047 24.911797271901833 14-15 24.131070547998824 23.034477686969527 23.820945400247012 29.013506364784636 16-17 24.87401182973846 26.169126118641355 24.27258322519149 24.6842788264287 18-19 24.892779603363007 25.40690031305044 25.676640823456097 24.02367926013045 20-21 25.243474991084913 24.750520473953642 25.767752356361868 24.238252178599577 22-23 25.04723212261326 24.379372552803012 25.627226508824453 24.946168815759272 24-25 24.753593618565866 24.632525200021274 25.76545674846391 24.848424432948953 26-27 24.82686320056419 24.77746644948497 25.708958831293156 24.686711518657685 28-29 24.822944204063578 24.84107167905737 25.64949232279854 24.686491794080517 30-31 24.957493807719914 24.88690364853177 25.54264566825171 24.612956875496607 32-33 24.83381326239133 24.89558698571731 25.468029240281343 24.80257051161002 34-35 24.908850261600588 24.87249535065172 25.64138169442025 24.57727269332744 36-37 25.021589065893373 24.836380317714248 25.46999946956145 24.67203114683092 38-39 24.979134895583407 24.889624736028512 25.51582723064717 24.615413137740912 40-41 25.012226235055724 24.82021661495203 25.57915927518347 24.588397874808773 42-43 24.95089688378109 24.717005426325166 25.536806906886273 24.79529078300747 44-45 24.8767060405425 24.877854725201036 25.511560210690437 24.733879023566026 46-47 25.031883505202675 24.835132209545876 25.420434265801706 24.71255001944975 48-49 25.036455029407257 24.928566127456904 25.26091118342468 24.774067659711164 50-51 24.782538780232024 25.163216464746004 25.28434069000282 24.769904065019155 52-53 24.919570855134925 25.09291714895234 25.259322650224508 24.728189345688236 54-55 24.80555517007499 24.963105895944533 25.434153510696795 24.797185423283683 56-57 24.80267905454135 25.07308132994312 25.413446617928802 24.71079299758673 58-59 24.90290138716019 25.02126808491459 25.36757058013875 24.708259947786473 60-61 24.920580861453168 24.90469540835638 25.40891225931128 24.76581147087918 62-63 24.74915808039621 25.097911931010003 25.39764885653365 24.755281132060137 64-65 24.814505093095665 24.937942546520734 25.406512767289293 24.84103959309431 66-67 24.815804307547257 25.04961668972625 25.358196991567034 24.77638201115946 68-69 24.777845280744305 25.00797067226091 25.39032452502704 24.823859521967737 70-71 24.737836542752444 24.84254378705967 25.448593692999705 24.971025977188184 72-73 24.84317026780964 24.93110559505847 25.30881598222407 24.916908154907823 74-75 24.68713423381967 25.09680318328235 25.287626884660153 24.928435698237823 76-77 24.858901387070375 24.9100898706037 25.257526152745264 24.97348258958066 78-79 24.795619968463463 24.84000544883477 25.419734614026073 24.9446399686757 80-81 24.74635535555403 24.97890964231338 25.31005343323736 24.964681568895223 82-83 24.917198299324223 24.905826670822545 25.27515550431223 24.901819525541 84-85 24.874612274063367 24.93896530631026 25.186027250434417 25.000395169191957 86-87 24.823865109684725 24.90703743783323 25.362752936934868 24.906344515547175 88-89 24.824466577011073 24.69243070120017 25.35491680938425 25.128185912404504 90-91 24.82661572939201 24.749586131034125 25.335342411940303 25.088455727633562 92-93 24.82933278185671 24.896625201254682 25.331010490687877 24.943031526200734 94-95 25.015728477000472 24.742069220025638 25.26964727712721 24.97255502584668 96-97 24.913525607410534 24.69607952796378 25.276585414394386 25.1138094502313 98 24.91646682948146 24.75892857529549 25.163742338010614 25.160862257212436 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 454.0 1 326.0 2 333.5 3 487.5 4 417.0 5 369.5 6 570.0 7 1064.0 8 1578.0 9 1687.0 10 1505.5 11 1483.0 12 1726.0 13 2062.0 14 2433.0 15 2812.0 16 3118.0 17 3359.0 18 3500.5 19 3492.0 20 3442.5 21 3273.5 22 3242.0 23 3502.0 24 3902.0 25 4536.5 26 5636.5 27 7160.0 28 9204.0 29 11915.5 30 15187.0 31 19430.0 32 25140.0 33 31361.0 34 38746.0 35 47910.0 36 57882.5 37 68753.5 38 80505.0 39 92859.0 40 105525.0 41 119004.5 42 133381.5 43 147800.0 44 161530.5 45 175260.0 46 189686.0 47 203416.5 48 212557.5 49 216293.0 50 217281.0 51 217182.5 52 218463.5 53 220073.5 54 217982.5 55 210606.0 56 198207.0 57 184683.0 58 169659.0 59 151630.0 60 132597.0 61 112222.0 62 91302.0 63 70633.0 64 52626.0 65 39732.0 66 30351.0 67 22940.0 68 17226.0 69 13077.5 70 9780.5 71 7283.0 72 5591.0 73 4092.5 74 2983.5 75 2191.5 76 1504.5 77 912.5 78 553.5 79 332.5 80 201.5 81 129.5 82 78.0 83 46.5 84 29.0 85 21.0 86 25.5 87 19.0 88 11.0 89 11.5 90 9.5 91 9.0 92 9.5 93 8.5 94 7.0 95 7.5 96 8.0 97 7.0 98 5.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.4575371696391453 2 0.04577743584258945 3 0.0527421611262241 4 0.05026246017384644 5 0.060008763047539534 6 0.06130252006617136 7 0.03933021336640751 8 0.01839291228154913 9 0.011298811296051281 10-11 0.013929450567269326 12-13 0.010123648670794039 14-15 0.014166639354018497 16-17 0.013228665515510423 18-19 0.05305481907239346 20-21 0.07888683421107559 22-23 0.09533911096467698 24-25 0.06655301730011885 26-27 0.08081668843053474 28-29 0.08206732021521217 30-31 0.0528068489771557 32-33 0.029767192737020595 34-35 0.38645600277381503 36-37 0.6094134623180331 38-39 0.5582345909226558 40-41 0.5530272189226627 42-43 0.5262356673284952 44-45 0.5106674578709589 46-47 0.50027427648795 48-49 0.48997812688133835 50-51 0.5042417980117542 52-53 0.5871824042145429 54-55 0.5564880189475028 56-57 0.5129638765790304 58-59 0.49076516240100604 60-61 0.503950702682562 62-63 0.5162845195935188 64-65 0.5346127440241364 66-67 0.5617600787984275 68-69 0.5146349793947632 70-71 0.4625612593948322 72-73 0.444761319080156 74-75 0.42653012642593585 76-77 0.4400175433451727 78-79 0.4345945451754075 80-81 0.4317806236598834 82-83 0.45072338267435097 84-85 0.41790507963505696 86-87 0.42119337872407964 88-89 0.4469714873203187 90-91 0.43018499000357074 92-93 0.42588324791661997 94-95 0.43631955453358334 96-97 0.4303790535563655 98 0.42543043296009886 >>END_MODULE >>Sequence Length Distribution pass #Length Count 98 4637656.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 56.012241396391225 #Duplication Level Percentage of deduplicated Percentage of total 1 75.07035162625218 42.04858657001607 2 13.676974329223121 15.321559754013828 3 4.775515057437688 8.024619065679026 4 2.1136801851721043 4.7356785906651515 5 1.1750325792742764 3.2908104239467493 6 0.6791448998063507 2.282425684264875 7 0.47638549035181166 1.8678393358326713 8 0.3407879887414209 1.52706392723001 9 0.25693486473206023 1.2952347899869157 >10 1.3229529003834557 13.343170393207837 >50 0.08173117436868836 3.121254558748595 >100 0.030004973383933525 2.7675413889501526 >500 3.10111354742645E-4 0.11989663849976985 >1k 1.9381951824446914E-4 0.25431887895826333 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 2.1562616977197103E-5 0.0 2 0.0 2.1562616977197103E-5 0.0 4.3125233954394206E-5 0.0 3 0.0 2.1562616977197103E-5 0.0 4.3125233954394206E-5 0.0 4 0.0 2.1562616977197103E-5 0.0 4.3125233954394206E-5 0.0 5 0.0 2.1562616977197103E-5 0.0 4.3125233954394206E-5 0.0 6 4.3125233954394206E-5 2.1562616977197103E-5 0.0 4.3125233954394206E-5 2.1562616977197103E-5 7 4.3125233954394206E-5 2.1562616977197103E-5 0.0 4.3125233954394206E-5 2.1562616977197103E-5 8 4.3125233954394206E-5 2.1562616977197103E-5 0.0 4.3125233954394206E-5 4.3125233954394206E-5 9 4.3125233954394206E-5 2.1562616977197103E-5 0.0 6.46878509315913E-5 4.3125233954394206E-5 10-11 4.3125233954394206E-5 2.1562616977197103E-5 0.0 6.46878509315913E-5 4.3125233954394206E-5 12-13 4.3125233954394206E-5 2.1562616977197103E-5 0.0 6.46878509315913E-5 1.6171962732897826E-4 14-15 4.3125233954394206E-5 2.1562616977197103E-5 0.0 6.46878509315913E-5 2.0484486128337245E-4 16-17 4.3125233954394206E-5 2.1562616977197103E-5 0.0 8.625046790878841E-5 2.587514037263652E-4 18-19 4.3125233954394206E-5 2.1562616977197103E-5 0.0 1.0781308488598551E-4 2.8031402070356233E-4 20-21 4.3125233954394206E-5 2.1562616977197103E-5 0.0 1.1859439337458406E-4 3.557831801237522E-4 22-23 4.3125233954394206E-5 4.3125233954394206E-5 0.0 1.293757018631826E-4 3.9890841407814635E-4 24-25 4.3125233954394206E-5 4.3125233954394206E-5 0.0 1.9406355279477392E-4 4.096897225667449E-4 26-27 4.3125233954394206E-5 4.3125233954394206E-5 0.0 2.6953271221496377E-4 4.096897225667449E-4 28-29 4.3125233954394206E-5 4.3125233954394206E-5 0.0 5.390654244299275E-4 4.096897225667449E-4 30-31 4.3125233954394206E-5 6.46878509315913E-5 0.0 0.0014339140289836073 4.3125233954394203E-4 32-33 4.3125233954394206E-5 6.46878509315913E-5 0.0 0.003342205631465551 4.528149565211391E-4 34-35 4.3125233954394206E-5 1.1859439337458406E-4 0.0 0.005325966393367684 4.743775734983362E-4 36-37 4.3125233954394206E-5 1.4015701035178114E-4 0.0 0.008581921556924447 4.743775734983362E-4 38-39 4.3125233954394206E-5 1.8328224430617536E-4 0.0 0.013713824397497357 4.743775734983362E-4 40-41 4.3125233954394206E-5 2.2640747826056958E-4 0.0 0.020020889863327507 4.743775734983362E-4 42-43 4.3125233954394206E-5 2.371887867491681E-4 0.0 0.025368418873672388 5.175028074527304E-4 44-45 4.3125233954394206E-5 2.371887867491681E-4 0.0 0.03139517031879898 5.821906583843217E-4 46-47 4.3125233954394206E-5 2.371887867491681E-4 0.0 0.03857552177220562 6.46878509315913E-4 48-49 4.3125233954394206E-5 2.371887867491681E-4 0.0 0.045831342385032434 7.331289772247014E-4 50-51 4.3125233954394206E-5 2.4797009523776665E-4 0.0 0.05315185084879086 7.439102857133E-4 52-53 5.3906542442992754E-5 2.587514037263652E-4 0.0 0.06111923782186519 9.164112215308768E-4 54-55 6.46878509315913E-5 2.587514037263652E-4 0.0 0.06875240423179296 9.703177639738696E-4 56-57 6.46878509315913E-5 2.587514037263652E-4 0.0 0.07701088653405945 9.703177639738696E-4 58-59 6.46878509315913E-5 2.587514037263652E-4 0.0 0.0854526510806321 9.703177639738696E-4 60-61 6.46878509315913E-5 2.587514037263652E-4 0.0 0.09442269974314611 0.0010350056149054608 62-63 1.509383188403797E-4 2.587514037263652E-4 0.0 0.10330649793775132 0.0010996934658370522 64-65 1.509383188403797E-4 2.587514037263652E-4 0.0 0.11200701388805034 0.0011428186997914465 66-67 1.509383188403797E-4 2.587514037263652E-4 0.0 0.12163472236836885 0.0011643813167686436 68-69 1.509383188403797E-4 2.587514037263652E-4 0.0 0.1308203972006548 0.0011643813167686436 70-71 1.509383188403797E-4 2.587514037263652E-4 0.0 0.14086857671202868 0.0011859439337458405 72-73 1.509383188403797E-4 2.8031402070356233E-4 0.0 0.15060409827723314 0.0013800074865406146 74-75 1.509383188403797E-4 2.8031402070356233E-4 0.0 0.16054446470372102 0.0014986018799151984 76-77 1.509383188403797E-4 2.8031402070356233E-4 2.1562616977197103E-5 0.17046326851323168 0.0015093831884037971 78-79 1.509383188403797E-4 2.8031402070356233E-4 2.1562616977197103E-5 0.18180520504323736 0.0015093831884037971 80-81 1.509383188403797E-4 2.8031402070356233E-4 2.1562616977197103E-5 0.19381558269953614 0.0015632897308467898 82-83 1.509383188403797E-4 2.8031402070356233E-4 2.1562616977197103E-5 0.20510361268709884 0.0017250093581757681 84-85 1.509383188403797E-4 2.8031402070356233E-4 2.1562616977197103E-5 0.21693070809909143 0.0017465719751529653 86 1.509383188403797E-4 2.8031402070356233E-4 2.1562616977197103E-5 0.22636435302661517 0.0017681345921301624 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTACCTG 7080 0.0 43.691044 1 TACCTGG 7420 0.0 40.9016 2 GTATCAA 7360 0.0 40.402767 1 ACCTGGG 9165 0.0 32.36369 3 TCAACGC 9185 0.0 31.094988 4 GGTATCA 4410 0.0 30.478996 1 TATCAAC 9545 0.0 30.354797 2 CAACGCA 9470 0.0 30.013954 5 ATCAACG 9695 0.0 29.506857 3 AACGCAG 10060 0.0 28.612083 6 GTACATG 13615 0.0 25.898077 1 CCTGGGG 8835 0.0 25.477478 4 TACATGG 14055 0.0 23.81103 2 ACGCAGA 12050 0.0 23.69215 7 ACATGGG 14410 0.0 22.174559 3 CGCAGAG 13195 0.0 21.632992 8 GAGTACA 10190 0.0 20.011791 1 GCAGAGT 14805 0.0 18.7851 9 CATGGGG 11425 0.0 18.778942 4 AGTACAT 9810 0.0 18.552723 2 >>END_MODULE