##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921452_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4265009 Sequences flagged as poor quality 0 Sequence length 101 %GC 49 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.902068905364562 33.0 31.0 34.0 30.0 34.0 2 32.010443354281314 34.0 31.0 34.0 30.0 34.0 3 32.139766879741636 34.0 31.0 34.0 30.0 34.0 4 35.70243954936554 37.0 35.0 37.0 35.0 37.0 5 35.5039764277168 37.0 35.0 37.0 33.0 37.0 6 35.54225301752001 37.0 35.0 37.0 33.0 37.0 7 35.47315492183018 37.0 35.0 37.0 33.0 37.0 8 35.420877892637506 37.0 35.0 37.0 33.0 37.0 9 37.03866580351882 39.0 37.0 39.0 33.0 39.0 10-11 36.94427526413192 39.0 37.0 39.0 33.0 39.0 12-13 36.82051854990224 39.0 37.0 39.0 33.0 39.0 14-15 38.09943507739374 40.0 38.0 41.0 33.0 41.0 16-17 37.994092978467336 40.0 38.0 41.0 33.0 41.0 18-19 37.8788494936353 40.0 38.0 41.0 33.0 41.0 20-21 37.759011059531176 40.0 38.0 41.0 32.5 41.0 22-23 37.72639436399783 40.0 38.0 41.0 32.5 41.0 24-25 37.78802084591146 40.0 38.0 41.0 33.0 41.0 26-27 37.675881223228366 40.0 38.0 41.0 32.0 41.0 28-29 37.53342841714988 40.0 38.0 41.0 32.0 41.0 30-31 37.38860668289328 40.0 37.0 41.0 32.0 41.0 32-33 37.22746774977497 40.0 37.0 41.0 31.0 41.0 34-35 37.080296430793 40.0 37.0 41.0 31.0 41.0 36-37 36.98095971192558 40.0 37.0 41.0 31.0 41.0 38-39 36.944938217011966 40.0 37.0 41.0 31.0 41.0 40-41 36.77664795080151 40.0 36.0 41.0 30.5 41.0 42-43 36.53467378380679 39.0 36.0 41.0 30.0 41.0 44-45 36.325879265436484 39.0 35.5 40.5 30.0 41.0 46-47 36.054378666023915 39.0 35.0 40.0 29.5 41.0 48-49 35.7161408100194 39.0 35.0 40.0 28.0 41.0 50-51 35.426126885078084 38.0 35.0 40.0 27.5 41.0 52-53 35.098910928441185 38.0 34.0 40.0 27.0 41.0 54-55 34.75530954330929 38.0 34.0 40.0 26.0 41.0 56-57 34.35880404941701 37.5 33.5 40.0 25.5 41.0 58-59 33.95084934170127 37.0 33.0 40.0 24.5 41.0 60-61 33.50721381830613 36.5 32.5 39.0 23.0 40.5 62-63 33.04308197239443 36.0 32.0 39.0 22.5 40.0 64-65 32.498863191144494 35.0 31.0 39.0 20.5 40.0 66-67 31.94576154470014 35.0 31.0 38.0 19.5 40.0 68-69 31.418139211429565 35.0 30.5 37.5 18.0 39.5 70-71 30.838594010000918 34.0 30.0 37.0 14.0 39.0 72-73 30.2567007478765 34.0 29.0 36.0 9.5 39.0 74-75 29.70529347065856 34.0 29.0 35.5 7.5 38.0 76-77 28.484459001141616 32.0 27.0 34.5 7.0 36.0 78-79 29.415289979458425 34.0 29.0 35.0 7.0 37.0 80-81 29.421911067479577 34.0 29.0 35.0 4.5 36.5 82-83 29.049437058632233 34.0 29.0 35.0 2.0 36.0 84-85 28.514397390486163 33.5 28.5 35.0 2.0 36.0 86-87 27.948834222858615 33.0 27.0 35.0 2.0 35.0 88-89 27.36039806715531 33.0 26.0 35.0 2.0 35.0 90-91 26.833350058581352 32.0 25.0 34.0 2.0 35.0 92-93 26.341420381527918 32.0 25.0 34.0 2.0 35.0 94-95 25.77626026111551 32.0 23.5 34.0 2.0 35.0 96-97 24.93181620484271 31.5 19.0 34.0 2.0 35.0 98-99 23.83944992847612 31.0 4.5 34.0 2.0 35.0 100-101 20.28048850541699 25.5 2.0 32.0 2.0 34.5 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 25281.0 3 13476.0 4 8345.0 5 6321.0 6 5576.0 7 5855.0 8 6794.0 9 8135.0 10 9806.0 11 11613.0 12 13839.0 13 16379.0 14 18231.0 15 21123.0 16 23593.0 17 27551.0 18 29103.0 19 26833.0 20 27932.0 21 29552.0 22 31698.0 23 35101.0 24 39380.0 25 45678.0 26 54841.0 27 66456.0 28 80007.0 29 97133.0 30 118106.0 31 146199.0 32 186103.0 33 245078.0 34 337170.0 35 490245.0 36 728278.0 37 857392.0 38 360430.0 39 10376.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.63006924163454 17.28719638876725 13.257696376302718 24.825037993295496 2 16.22376412335824 18.577897490954882 38.88205159707752 26.316286788609354 3 20.640126469282734 22.010405765776245 27.391564009246967 29.95790375569406 4 14.074994885923244 14.528458664184384 34.30351435601106 37.09303209388131 5 15.633044430402451 35.39559928112291 32.87638760745934 16.09496868101529 6 35.94564387078853 32.80676087319656 16.3123755398357 14.935219716179212 7 32.15439772124693 29.585239724259615 18.73270170202582 19.527660852467633 8 28.27909059587056 34.103382429840565 18.28832376844874 19.329203205840134 9 26.82146969792617 16.581757951846445 18.56570958286115 38.03106276736624 10-11 26.99201809308896 24.950772393207394 25.828109787801175 22.22909972590247 12-13 26.934985210363916 21.736622912624277 26.609505262970153 24.718886614041658 14-15 23.822965245450575 23.502113594997756 23.996705147280668 28.678216012271 16-17 24.52852979493739 26.657775800292317 24.59989049035763 24.21380391441267 18-19 24.408558997974172 25.975332612632563 26.00140309135129 23.614705298041983 20-21 24.939136328643304 25.11603117617777 26.102561486643765 23.842271008535164 22-23 24.656583152633917 24.80278460641539 25.981731737807056 24.558900503143636 24-25 24.374829957501102 25.009510652869377 26.122620577722323 24.493038811907198 26-27 24.403753353847076 25.291999569431816 26.00051405526047 24.303733021460637 28-29 24.37879242174069 25.39029250259175 25.95498349149223 24.275931584175332 30-31 24.564436442129516 25.29043627752922 25.863500870013368 24.281626410327895 32-33 24.34456551214592 25.242394957495517 25.838099008730918 24.574940521627642 34-35 24.461869173451547 25.284636582825136 26.010445067258658 24.243049176464655 36-37 24.522314389114996 25.30109590785327 25.841891980776854 24.334697722254877 38-39 24.53666525143865 25.309424304706212 25.898262341532863 24.255648102322276 40-41 24.583626034214667 25.233577355287924 25.88974325691627 24.29305335358114 42-43 24.49352908832774 25.222920826147664 25.809154121300725 24.474395964223874 44-45 24.48012567313167 25.292866797548818 25.83121970848861 24.3957878208309 46-47 24.45887976352729 25.30734334873006 25.86145900746048 24.37231788028217 48-49 24.53631066162786 25.365252037123987 25.72317388635952 24.375263414888636 50-51 24.44515518771986 25.54229998504 25.613758603758384 24.398786223481757 52-53 24.52188378900869 25.453742923364242 25.601752907150555 24.422620380476516 54-55 24.590725906907355 25.299908847640733 25.692127777435836 24.417237468016072 56-57 24.459976285265235 25.449797988632216 25.70374542276779 24.386480303334764 58-59 24.59963087669657 25.371148522598226 25.664655828217338 24.364564772487878 60-61 24.63837712137883 25.367783824088885 25.659909948197644 24.333929106334637 62-63 24.461998334111872 25.440777958499122 25.689676277415398 24.407547429973604 64-65 24.545849223994097 25.305048514071537 25.689824384676918 24.459277877257446 66-67 24.551084513576768 25.446112549977883 25.58060658828452 24.422196348160828 68-69 24.54612444492825 25.40707216777337 25.650355940346913 24.39644744695147 70-71 24.48527181463442 25.272370390667326 25.66505790475909 24.57729988993916 72-73 24.59919430761632 25.268724397008956 25.58387602019109 24.548205275183633 74-75 24.45320399732436 25.45307462534614 25.50460056372403 24.589120813605476 76-77 24.500663117498778 25.316168309567704 25.62978526280146 24.55338331013206 78-79 24.426399714683924 25.297716532846543 25.742103361380032 24.533780391089504 80-81 24.43443673878211 25.50533838336515 25.60376451515719 24.456460362695545 82-83 24.579371271174207 25.386275775122595 25.555748001413285 24.47860495228991 84-85 24.514398949392618 25.44498381877023 25.51058815252568 24.530029079311475 86-87 24.443742586775077 25.447058688211584 25.638743294501122 24.470455430512217 88-89 24.51758694252475 25.217597877802046 25.67077556568849 24.594039613984712 90-91 24.493438630767127 25.34183751205819 25.592462401571243 24.57226145560344 92-93 24.583906138631374 25.43755170201903 25.64912753557609 24.329414623773506 94-95 24.59093273655427 25.375412854190525 25.48096611896133 24.552688290293872 96-97 24.55947810562396 25.353588738996773 25.571525411329237 24.515407744050034 98-99 24.4710422890644 25.362335577668144 25.56339830597998 24.60322382728748 100-101 25.095800511240885 24.79192369302427 25.640560585257443 24.471715210477402 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 149.0 1 134.0 2 250.0 3 371.5 4 266.5 5 210.0 6 415.5 7 962.0 8 1491.0 9 1459.5 10 1056.0 11 736.0 12 689.5 13 743.5 14 810.0 15 885.0 16 941.0 17 1085.5 18 1207.0 19 1271.0 20 1381.0 21 1495.0 22 1667.0 23 1979.5 24 2417.0 25 3041.5 26 3817.5 27 4841.5 28 6404.0 29 8740.0 30 12147.0 31 16454.5 32 21806.0 33 28484.0 34 36027.5 35 44560.5 36 54724.0 37 65742.0 38 76841.5 39 88310.5 40 100851.5 41 112573.0 42 124251.0 43 136924.0 44 149409.5 45 161119.0 46 171228.5 47 181076.0 48 190575.5 49 195476.5 50 194619.5 51 192918.0 52 192201.5 53 190213.5 54 186604.5 55 180157.5 56 169149.5 57 155514.5 58 142023.0 59 127857.0 60 111529.0 61 94036.0 62 75937.5 63 58248.5 64 43367.0 65 32330.0 66 24338.0 67 18946.5 68 14547.0 69 10840.5 70 8217.5 71 6252.5 72 4636.5 73 3481.5 74 2629.5 75 1877.5 76 1278.0 77 780.5 78 474.5 79 266.0 80 151.0 81 83.5 82 36.0 83 15.5 84 10.5 85 7.0 86 3.0 87 1.0 88 0.5 89 1.0 90 0.5 91 0.0 92 0.0 93 0.0 94 0.0 95 0.5 96 0.5 97 0.5 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.303469465128913 2 0.0 3 0.006049225218516538 4 0.05310657023232542 5 5.627186249782826E-4 6 0.06098463098202138 7 0.07101977979413408 8 0.10046872116799754 9 0.08829993090284217 10-11 0.0922506845823772 12-13 0.09184036891833054 14-15 0.061031524200769564 16-17 0.03417343316274362 18-19 0.03671739027983294 20-21 0.027584935928622895 22-23 0.040175765162511964 24-25 0.0320984082331362 26-27 0.020539229811707315 28-29 0.02334109963191168 30-31 0.0030949524373805543 32-33 0.0052403171951102565 34-35 0.007420851866901101 36-37 0.010844056835518987 38-39 0.015908524460323533 40-41 0.019777215007049223 42-43 0.0036107778436106465 44-45 0.014372771546320303 46-47 0.02362245894440082 48-49 0.0026142969452116046 50-51 0.007104322640350818 52-53 0.00220398128116494 54-55 0.004021093507657311 56-57 0.003516991406114266 58-59 9.026944609026616E-4 60-61 0.005662356163843968 62-63 0.01446655798381668 64-65 0.007467745085649292 66-67 0.03805384701415636 68-69 0.058546183607115485 70-71 0.01288391185106526 72-73 0.03158258282690611 74-75 0.04941372925590544 76-77 0.29001111134818236 78-79 0.07195764416909788 80-81 0.03295420947529067 82-83 0.027749062194241562 84-85 0.018968306983642942 86-87 0.1145601334018287 88-89 0.5125663275270932 90-91 0.1279247007450629 92-93 0.04685804883412907 94-95 0.0079132306637571 96-97 0.005580293031034636 98-99 0.009835852632432899 100-101 0.006740900195052343 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4265009.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 55.64350115393989 #Duplication Level Percentage of deduplicated Percentage of total 1 73.34429172637314 40.81133181311348 2 14.799036956880332 16.469404599747396 3 5.077615359359296 8.476088883233157 4 2.3344142501543685 5.195799280889533 5 1.2072067309597763 3.358660456360216 6 0.7003579293898389 2.338222035130467 7 0.49104713137348444 1.912650713485355 8 0.3453696475841849 1.5374061107109125 9 0.2641516488965323 1.3228490322170388 >10 1.3361083723815306 13.209232682775063 >50 0.074472249271447 2.8153563201800633 >100 0.025548619694265258 2.2441836595249005 >500 2.10765383849554E-4 0.07984234389598058 >1k 1.6861229803255868E-4 0.22897206873647827 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 2.3446609374095108E-5 0.0 8 0.0 0.0 0.0 2.3446609374095108E-5 0.0 9 0.0 0.0 0.0 9.378643749638043E-5 2.3446609374095108E-5 10-11 0.0 0.0 0.0 2.3446609374095108E-4 2.3446609374095108E-5 12-13 0.0 2.3446609374095108E-5 0.0 3.165292265502839E-4 9.378643749638043E-5 14-15 0.0 5.861652343523777E-5 0.0 3.516991406114266E-4 9.378643749638043E-5 16-17 0.0 7.033982812228532E-5 0.0 3.868690546725693E-4 1.1723304687047554E-4 18-19 0.0 7.033982812228532E-5 0.0 4.572088827948546E-4 1.4067965624457065E-4 20-21 0.0 7.033982812228532E-5 0.0 4.923787968559972E-4 1.6412626561866574E-4 22-23 0.0 7.033982812228532E-5 0.0 4.923787968559972E-4 1.9929617967980842E-4 24-25 0.0 7.033982812228532E-5 0.0 5.041021015430448E-4 2.3446609374095108E-4 26-27 0.0 7.033982812228532E-5 0.0 5.50995320291235E-4 2.813593124891413E-4 28-29 0.0 7.033982812228532E-5 0.0 8.792478515285665E-4 2.813593124891413E-4 30-31 0.0 8.206313280933287E-5 0.0 0.0017350490936830381 2.813593124891413E-4 32-33 0.0 9.378643749638043E-5 0.0 0.0039038604607868352 3.048059218632364E-4 34-35 0.0 1.1723304687047554E-4 0.0 0.006799516718487581 3.048059218632364E-4 36-37 0.0 1.758495703057133E-4 0.0 0.011770197905795744 3.048059218632364E-4 38-39 0.0 2.461893984279986E-4 0.0 0.019038646811765227 3.048059218632364E-4 40-41 0.0 2.6963600780209373E-4 0.0 0.027737338889554514 3.048059218632364E-4 42-43 0.0 3.6342244529847416E-4 0.0 0.036471200881404944 3.048059218632364E-4 44-45 0.0 3.751457499855217E-4 0.0 0.045193339568568316 3.048059218632364E-4 46-47 0.0 3.9859235935961685E-4 0.0 0.05406788121666332 3.165292265502839E-4 48-49 0.0 4.4548557810780704E-4 0.0 0.06383339402097393 3.516991406114266E-4 50-51 0.0 4.6893218748190216E-4 0.0 0.07388026613777368 3.516991406114266E-4 52-53 2.3446609374095108E-5 4.6893218748190216E-4 0.0 0.08370439546551953 3.751457499855217E-4 54-55 2.3446609374095108E-5 4.6893218748190216E-4 0.0 0.09452500569166442 3.9859235935961685E-4 56-57 2.3446609374095108E-5 4.8065549216894966E-4 0.0 0.10518148965219065 4.103156640466644E-4 58-59 2.3446609374095108E-5 4.923787968559972E-4 0.0 0.11588486683146507 4.220389687337119E-4 60-61 2.3446609374095108E-5 5.158254062300923E-4 0.0 0.12606069529982233 4.220389687337119E-4 62-63 2.3446609374095108E-5 5.158254062300923E-4 0.0 0.13662339282285219 4.4548557810780704E-4 64-65 2.3446609374095108E-5 5.158254062300923E-4 0.0 0.1478191487989826 4.4548557810780704E-4 66-67 2.3446609374095108E-5 5.861652343523777E-4 0.0 0.16035136150943644 4.572088827948546E-4 68-69 2.3446609374095108E-5 5.861652343523777E-4 0.0 0.1720981128058581 4.6893218748190216E-4 70-71 2.3446609374095108E-5 5.978885390394253E-4 0.0 0.18457170899287667 4.6893218748190216E-4 72-73 2.3446609374095108E-5 6.096118437264728E-4 0.0 0.19647086325022994 5.041021015430448E-4 74-75 2.3446609374095108E-5 6.096118437264728E-4 0.0 0.20800659506228475 5.275487109171399E-4 76-77 2.3446609374095108E-5 6.33058453100568E-4 0.0 0.22078499717116656 5.392720156041875E-4 78-79 2.3446609374095108E-5 6.33058453100568E-4 0.0 0.23445437043626405 5.627186249782826E-4 80-81 2.3446609374095108E-5 6.33058453100568E-4 0.0 0.24812374370136148 5.978885390394253E-4 82-83 3.516991406114266E-5 6.33058453100568E-4 0.0 0.2619220733180164 7.033982812228532E-4 84-85 4.6893218748190216E-5 6.33058453100568E-4 0.0 0.27604865546590873 7.033982812228532E-4 86-87 4.6893218748190216E-5 6.33058453100568E-4 0.0 0.29151169434812446 7.151215859099008E-4 88-89 4.6893218748190216E-5 6.33058453100568E-4 0.0 0.3074084955037609 7.268448905969483E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 6475 0.0 39.58029 1 GGTATCA 3770 0.0 37.654026 1 GTACCTG 5410 0.0 33.45976 1 TCAACGC 8065 0.0 30.980406 4 TACCTGG 5730 0.0 30.256487 2 CAACGCA 8345 0.0 29.925108 5 ATCAACG 8440 0.0 29.54693 3 TATCAAC 8660 0.0 28.959848 2 AACGCAG 9105 0.0 27.32456 6 GTACATG 12720 0.0 24.67941 1 TACATGG 13035 0.0 23.21179 2 ACCTGGG 7245 0.0 22.946962 3 ACGCAGA 10975 0.0 22.453814 7 ACATGGG 13205 0.0 21.942545 3 GTGTAGC 2710 0.0 21.26927 1 CGCAGAG 11620 0.0 21.166592 8 GAGTACA 10060 0.0 19.793144 1 AGTACAT 9505 0.0 19.3892 2 GTATAGG 1050 0.0 19.054453 1 TATCACG 350 6.366463E-11 18.999416 2 >>END_MODULE