##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921447_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2695280 Sequences flagged as poor quality 0 Sequence length 98 %GC 49 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.43415897420676 31.0 31.0 34.0 27.0 34.0 2 30.538716200172153 31.0 31.0 34.0 27.0 34.0 3 30.669500014840757 31.0 31.0 34.0 27.0 34.0 4 34.19872369475527 37.0 35.0 37.0 30.0 37.0 5 34.18935101362381 37.0 35.0 37.0 30.0 37.0 6 34.29128031224956 37.0 35.0 37.0 31.0 37.0 7 34.18189650054911 37.0 35.0 37.0 30.0 37.0 8 34.1655037695527 37.0 35.0 37.0 30.0 37.0 9 35.62776817250898 39.0 37.0 39.0 30.0 39.0 10-11 35.504583011783566 39.0 35.0 39.0 30.0 39.0 12-13 35.35045097355377 39.0 35.0 39.0 30.0 39.0 14-15 36.36964044551958 40.0 36.0 41.0 30.0 41.0 16-17 36.22909660591849 39.5 36.0 41.0 29.0 41.0 18-19 36.05926972336826 39.0 36.0 41.0 28.5 41.0 20-21 35.953180374580754 39.0 36.0 40.5 27.5 41.0 22-23 35.990656814876374 39.0 36.0 41.0 27.5 41.0 24-25 35.86087809058799 39.0 36.0 41.0 27.0 41.0 26-27 35.60207770621234 39.0 36.0 40.5 27.0 41.0 28-29 35.37658907423348 39.0 35.0 40.0 26.5 41.0 30-31 35.134187171648215 39.0 35.0 40.0 25.5 41.0 32-33 34.86661385830044 38.0 34.5 40.0 24.5 41.0 34-35 34.45467762162002 38.0 34.0 40.0 23.5 41.0 36-37 34.082719791635746 38.0 33.5 40.0 21.0 41.0 38-39 33.86025385117687 38.0 33.0 40.0 19.0 41.0 40-41 33.5981808940073 38.0 33.0 40.0 18.0 41.0 42-43 33.32629615475943 38.0 33.0 40.0 15.5 41.0 44-45 33.01460312101155 38.0 32.0 40.0 15.0 41.0 46-47 32.732399045739214 37.0 32.0 40.0 12.5 41.0 48-49 32.519266458401354 37.0 31.0 40.0 9.0 41.0 50-51 31.78014992876436 36.0 30.5 39.0 9.0 40.0 52-53 32.315154826214716 37.0 31.5 39.0 9.0 40.0 54-55 32.76636008132736 37.0 32.0 40.0 8.0 40.5 56-57 32.62685157015227 37.0 32.0 40.0 7.5 41.0 58-59 32.30758065952331 36.5 32.0 39.5 4.5 41.0 60-61 31.86158451070019 36.0 31.0 39.0 2.0 40.5 62-63 31.38438752189012 35.5 31.0 39.0 2.0 40.0 64-65 30.84947278204862 35.0 30.0 38.5 2.0 40.0 66-67 30.369331015701523 35.0 29.5 38.0 2.0 40.0 68-69 29.857421677896173 34.5 29.0 37.0 2.0 39.5 70-71 29.33916939983972 34.0 28.5 36.5 2.0 39.0 72-73 28.790898533733042 34.0 28.0 36.0 2.0 39.0 74-75 28.19661148377905 34.0 26.5 35.5 2.0 38.0 76-77 27.613030186103114 33.0 26.0 35.0 2.0 37.0 78-79 27.05019738209017 33.0 25.5 35.0 2.0 36.5 80-81 26.480270138909503 32.0 24.5 35.0 2.0 36.0 82-83 25.85307333560892 32.0 22.5 34.5 2.0 35.5 84-85 25.235577750734617 31.5 20.0 34.0 2.0 35.0 86-87 24.61618180671396 31.0 18.0 34.0 2.0 35.0 88-89 23.965841953340657 31.0 11.0 34.0 2.0 35.0 90-91 23.22979838829361 30.0 4.5 34.0 2.0 35.0 92-93 22.410165363153364 29.5 2.0 34.0 2.0 35.0 94-95 21.495513638657208 29.0 2.0 34.0 2.0 35.0 96-97 20.583506908373153 29.0 2.0 33.5 2.0 34.0 98 19.949804101985695 27.0 2.0 33.0 2.0 34.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 76733.0 3 13549.0 4 10113.0 5 8893.0 6 8326.0 7 8624.0 8 9738.0 9 11464.0 10 12344.0 11 14092.0 12 15627.0 13 17979.0 14 14957.0 15 15006.0 16 17072.0 17 19474.0 18 22193.0 19 21543.0 20 22403.0 21 24302.0 22 27152.0 23 29956.0 24 33226.0 25 37982.0 26 43086.0 27 49650.0 28 57802.0 29 67883.0 30 81527.0 31 99593.0 32 124578.0 33 161901.0 34 218826.0 35 304530.0 36 404671.0 37 414171.0 38 167787.0 39 6527.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.349937480008144 17.339362393013268 13.408804693808621 24.90189543316997 2 16.125495087176176 18.881687620871798 38.60681447826071 26.386002813691317 3 19.867075915147762 22.028252400585362 28.224892137929807 29.87977954633707 4 13.944379583450115 14.88394625426211 34.7010444373087 36.47062972497907 5 15.549613681227518 35.58795782886288 33.053598272285775 15.808830217623829 6 35.22285334104586 33.27795213059222 16.433143626415607 15.066050901946312 7 31.05663837037092 30.534833395815316 19.321816852318577 19.08671138149519 8 27.76682852429998 33.75902447532336 19.03657289809278 19.43757410228388 9 26.87791123319959 16.26216303165663 19.034311966571536 37.82561376857224 10-11 26.462390788475204 24.978579790974383 26.30446197147559 22.254567449074823 12-13 26.562408394292486 22.099322665079516 26.8040433785261 24.534225562101895 14-15 23.74895077959581 23.78754279446264 24.273932058757826 28.189574367183724 16-17 24.133866492707092 26.868942909867194 24.98360779834642 24.01358279907929 18-19 24.154137623620684 26.115400528143688 26.430274694485377 23.300187153750247 20-21 24.610748591464958 25.405061164166163 26.335636563146654 23.648553681222225 22-23 24.51838752322895 25.03783206000836 26.167659210809024 24.276121205953668 24-25 24.23576586778547 25.197523530176174 26.27740546159987 24.28930514043849 26-27 24.23614681443992 25.405328326109732 26.271528991226777 24.08699586822357 28-29 24.256327407001123 25.54719994682251 26.16843340103685 24.028039245139524 30-31 24.465848792149206 25.384737179248017 26.001289309699576 24.1481247189032 32-33 24.297482688052398 25.37316534923407 25.9792783651316 24.350073597581932 34-35 24.39971525169158 25.451373005383548 26.093304615127867 24.055607127797007 36-37 24.487719129900533 25.395667349875843 25.950218637515743 24.166394882707877 38-39 24.4862175310378 25.45702102822921 25.92019960920065 24.136561831532344 40-41 24.50793259856741 25.380602403568968 25.95190249891315 24.159562498950468 42-43 24.51533680992936 25.26820134560942 25.845464019618763 24.37099782484246 44-45 24.43021467987506 25.420415066160075 25.882420301672337 24.26694995229253 46-47 24.51357165661635 25.345930293274293 25.838624543856874 24.30187350625248 48-49 24.434504646973412 25.49738921821616 25.70212716762575 24.365978967184684 50-51 24.411253827283716 25.626734609461337 25.64551436194159 24.316497201313354 52-53 24.47668104042814 25.60453883108712 25.640057943001064 24.278722185483677 54-55 24.42945476454321 25.413857656588217 25.746246168641175 24.410441410227392 56-57 24.39065922424546 25.56793596652999 25.674842437915167 24.366562371309378 58-59 24.438953196204203 25.471887570794554 25.78317570960512 24.30598352339612 60-61 24.56343004054866 25.378692584889144 25.704398512625136 24.353478861937052 62-63 24.396892000196214 25.54020604981536 25.777937185338708 24.284964764649718 64-65 24.44047506895365 25.34132639117542 25.781808922140442 24.436389617730487 66-67 24.414982697702886 25.49907960549456 25.65567262505096 24.430265071751585 68-69 24.386340356356044 25.416927471704366 25.744627913587053 24.452104258352538 70-71 24.36922014655422 25.343023332763533 25.730128693984504 24.557627826697743 72-73 24.425635748682243 25.37932633499255 25.621173723996886 24.573864192328315 74-75 24.309973427548144 25.53055459278556 25.61289937873384 24.54657260093246 76-77 24.475956518084633 25.317199294100064 25.62838345447778 24.578460733337522 78-79 24.396012421255982 25.272369563487484 25.725205335929452 24.606412679327082 80-81 24.327276271385745 25.420670713901426 25.642115094799177 24.60993791991365 82-83 24.510548575899847 25.344895105103653 25.622432799624683 24.522123519371814 84-85 24.48962100185728 25.372126509597926 25.50518055551415 24.633071933030642 86-87 24.4784733536759 25.29705162012572 25.710412123253878 24.514062902944502 88-89 24.413545610447677 25.1257210520067 25.664577482022743 24.796155855522883 90-91 24.417841692297802 25.189766678251534 25.64839704856048 24.74399458089018 92-93 24.46005816822274 25.303605475743613 25.66257287798537 24.57376347804828 94-95 24.55465915253574 25.190359847108308 25.588914420534152 24.6660665798218 96-97 24.539747312688576 25.160871575370226 25.594956018528443 24.70442509341276 98 24.591978467926804 25.120925980516933 25.433941562722563 24.853153988833704 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 559.0 1 422.5 2 465.5 3 636.0 4 543.0 5 537.0 6 846.5 7 1637.0 8 2361.5 9 2306.5 10 1783.0 11 1423.0 12 1471.0 13 1671.0 14 1869.5 15 2035.0 16 2216.0 17 2290.5 18 2238.5 19 2180.5 20 2053.5 21 1941.0 22 1859.0 23 1831.0 24 1991.0 25 2362.0 26 2932.0 27 3795.5 28 5000.5 29 6788.0 30 9420.0 31 12855.0 32 17043.0 33 21761.0 34 27219.0 35 33382.0 36 40242.5 37 47327.0 38 54785.0 39 62316.0 40 69583.0 41 77527.0 42 86330.5 43 94760.5 44 101492.5 45 108190.0 46 115476.5 47 122423.0 48 125747.0 49 125683.0 50 125664.0 51 125043.5 52 123962.5 53 123499.0 54 120892.0 55 114374.0 56 105768.0 57 97354.5 58 88822.5 59 78736.5 60 67711.5 61 56068.0 62 44985.5 63 34518.5 64 25414.0 65 19094.5 66 14398.0 67 10758.0 68 8130.0 69 6122.0 70 4615.5 71 3412.0 72 2507.0 73 1816.5 74 1324.0 75 967.5 76 637.0 77 383.5 78 234.0 79 135.0 80 77.5 81 49.5 82 36.0 83 23.0 84 11.0 85 7.5 86 9.5 87 7.5 88 6.0 89 8.0 90 6.5 91 4.0 92 3.5 93 2.5 94 4.0 95 3.5 96 3.0 97 2.5 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.4800243388442017 2 0.04860348461013327 3 0.05795316256567035 4 0.05509631652370069 5 0.06600427413849395 6 0.06778516517764388 7 0.04340921907927933 8 0.019478495740702265 9 0.012280727790804665 10-11 0.014655249176337894 12-13 0.011353180374580748 14-15 0.015657000385859727 16-17 0.014877860556231635 18-19 0.055856905405004306 20-21 0.08616915496720193 22-23 0.10345863880561575 24-25 0.07160666053248642 26-27 0.08795004600635185 28-29 0.08947122376895907 30-31 0.05901056662016562 32-33 0.03331750319076311 34-35 0.40084889139532814 36-37 0.6303055712208008 38-39 0.5804220711762785 40-41 0.5756359265085631 42-43 0.5485329910065002 44-45 0.5327090320857203 46-47 0.5232851503368852 48-49 0.5121360303938737 50-51 0.5268840343118341 52-53 0.6099737318571725 54-55 0.5782145083256656 56-57 0.535454572437743 58-59 0.5135459024665341 60-61 0.5261234454305305 62-63 0.5387380902911756 64-65 0.5579197708586863 66-67 0.5833345700632216 68-69 0.537161259683595 70-71 0.4847177287702948 72-73 0.46735404113858303 74-75 0.4470778546199282 76-77 0.4624194888842718 78-79 0.45629767593719395 80-81 0.4531440147220326 82-83 0.4734758540856609 84-85 0.43720875011130567 86-87 0.4418093852957763 88-89 0.4695059511442225 90-91 0.45199385592591496 92-93 0.4462616128936512 94-95 0.4576518951648808 96-97 0.4512147160962868 98 0.44622451099700217 >>END_MODULE >>Sequence Length Distribution pass #Length Count 98 2695280.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 62.58868402876866 #Duplication Level Percentage of deduplicated Percentage of total 1 78.30023418628083 49.0070861686372 2 12.726330058223922 15.930485017199963 3 3.970154710822475 7.45460276222986 4 1.6883931845357383 4.226972301729353 5 0.9149640529553644 2.8633198004052427 6 0.5624038151659475 2.11200688103973 7 0.350040499618787 1.5336001959538805 8 0.25845599292471705 1.2941136381205425 9 0.19805005815389534 1.1156123260506072 >10 0.9691215533727257 10.668418164034508 >50 0.048338607019438574 2.046457873814942 >100 0.013037479114993061 1.2880829877643607 >500 2.97376132074715E-4 0.12459127685756494 >1k 1.784256792189245E-4 0.33465060616224257 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4015 0.14896411504556115 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 3.710189664895669E-5 2 0.0 0.0 0.0 0.0 3.710189664895669E-5 3 0.0 0.0 0.0 0.0 3.710189664895669E-5 4 0.0 0.0 0.0 0.0 3.710189664895669E-5 5 0.0 7.420379329791338E-5 0.0 0.0 3.710189664895669E-5 6 0.0 7.420379329791338E-5 0.0 0.0 3.710189664895669E-5 7 0.0 7.420379329791338E-5 0.0 0.0 3.710189664895669E-5 8 0.0 7.420379329791338E-5 0.0 0.0 3.710189664895669E-5 9 0.0 7.420379329791338E-5 0.0 0.0 3.710189664895669E-5 10-11 0.0 7.420379329791338E-5 0.0 0.0 3.710189664895669E-5 12-13 3.710189664895669E-5 1.2985663827134842E-4 0.0 3.710189664895669E-5 1.1130568994687008E-4 14-15 5.565284497343504E-5 1.4840758659582677E-4 0.0 3.710189664895669E-5 1.1130568994687008E-4 16-17 7.420379329791338E-5 1.4840758659582677E-4 0.0 7.420379329791338E-5 1.1130568994687008E-4 18-19 7.420379329791338E-5 1.4840758659582677E-4 0.0 1.6695853492030514E-4 1.4840758659582677E-4 20-21 7.420379329791338E-5 2.5971327654269685E-4 0.0 2.968151731916536E-4 1.4840758659582677E-4 22-23 7.420379329791338E-5 2.5971327654269685E-4 0.0 3.895699148140453E-4 2.0406043156926182E-4 24-25 7.420379329791338E-5 2.5971327654269685E-4 0.0 5.565284497343504E-4 2.9681517319165353E-4 26-27 7.420379329791338E-5 2.5971327654269685E-4 0.0 8.904455195749607E-4 2.9681517319165353E-4 28-29 7.420379329791338E-5 2.5971327654269685E-4 0.0 0.001966400522394705 2.9681517319165353E-4 30-31 7.420379329791338E-5 2.5971327654269685E-4 0.0 0.006455730016918465 2.9681517319165353E-4 32-33 7.420379329791338E-5 2.5971327654269685E-4 0.0 0.016324834525540947 3.7101896648956696E-4 34-35 7.420379329791338E-5 2.5971327654269685E-4 0.0 0.03018239292392627 4.0812086313852364E-4 36-37 7.420379329791338E-5 2.5971327654269685E-4 0.0 0.051126413582262324 4.0812086313852364E-4 38-39 7.420379329791338E-5 2.782642248671752E-4 0.0 0.08281143332047133 4.0812086313852364E-4 40-41 7.420379329791338E-5 2.9681517319165353E-4 0.0 0.11622169125285683 4.0812086313852364E-4 42-43 7.420379329791338E-5 3.3391706984061027E-4 0.0 0.14851889228577364 4.26671811463002E-4 44-45 9.275474162239174E-5 3.3391706984061027E-4 0.0 0.18482309815677778 4.6377370811195867E-4 46-47 1.1130568994687008E-4 3.3391706984061027E-4 0.0 0.2214612210976225 4.82324656436437E-4 48-49 1.1130568994687008E-4 3.3391706984061027E-4 0.0 0.2591010952479891 4.82324656436437E-4 50-51 1.1130568994687008E-4 3.3391706984061027E-4 0.0 0.2945890593927162 4.82324656436437E-4 52-53 1.4840758659582677E-4 3.3391706984061027E-4 0.0 0.3317466088866463 4.82324656436437E-4 54-55 1.4840758659582677E-4 3.3391706984061027E-4 0.0 0.37164969873259923 4.82324656436437E-4 56-57 1.4840758659582677E-4 3.7101896648956696E-4 0.0 0.4123690303048292 4.82324656436437E-4 58-59 1.4840758659582677E-4 3.7101896648956696E-4 0.0 0.45225356920245763 4.82324656436437E-4 60-61 1.4840758659582677E-4 3.7101896648956696E-4 0.0 0.4923978213766288 4.82324656436437E-4 62-63 1.4840758659582677E-4 3.895699148140453E-4 0.0 0.5317072808761985 4.82324656436437E-4 64-65 1.4840758659582677E-4 4.6377370811195867E-4 0.0 0.5732614051230298 4.82324656436437E-4 66-67 1.4840758659582677E-4 5.194265530853937E-4 0.0 0.6170230922204742 4.82324656436437E-4 68-69 1.4840758659582677E-4 5.194265530853937E-4 0.0 0.6615453681992223 5.194265530853937E-4 70-71 1.4840758659582677E-4 5.565284497343504E-4 0.0 0.7072363539224125 5.565284497343504E-4 72-73 1.4840758659582677E-4 5.936303463833071E-4 0.0 0.7520554450743522 6.678341396812205E-4 74-75 1.4840758659582677E-4 5.936303463833071E-4 0.0 0.7966519248463981 6.678341396812205E-4 76-77 1.4840758659582677E-4 5.936303463833071E-4 0.0 0.8445690243685258 6.678341396812205E-4 78-79 1.4840758659582677E-4 6.307322430322639E-4 0.0 0.8957881926924105 6.678341396812205E-4 80-81 1.4840758659582677E-4 6.492831913567421E-4 0.0 0.9474525837760827 6.678341396812205E-4 82-83 1.4840758659582677E-4 7.049360363301772E-4 0.0 0.998894363479861 6.863850880056989E-4 84-85 1.4840758659582677E-4 7.420379329791339E-4 0.0 1.0507999168917515 7.049360363301772E-4 86 1.4840758659582677E-4 7.420379329791339E-4 0.0 1.089794010269805 7.049360363301772E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 4900 0.0 37.95854 1 GGTATCA 2870 0.0 35.130672 1 TCAACGC 5795 0.0 31.649055 4 TATCAAC 5975 0.0 30.61944 2 CAACGCA 6045 0.0 30.340162 5 ATCAACG 6145 0.0 29.697742 3 AACGCAG 6310 0.0 29.418367 6 ACGCAGA 7445 0.0 24.862242 7 GTACATG 7260 0.0 23.970629 1 CGCAGAG 7855 0.0 23.441786 8 GTACCTG 2480 0.0 22.833775 1 TACATGG 7500 0.0 22.192572 2 ACATGGG 7650 0.0 20.858356 3 TACCTGG 2660 0.0 20.685303 2 GCAGAGT 8990 0.0 20.17652 9 GAGTACA 5710 0.0 20.157104 1 AGTACAT 5455 0.0 18.912548 2 GTATATA 665 0.0 18.692455 1 CATGGGG 6000 0.0 18.11137 4 AGAGTAC 7380 0.0 17.968302 10-11 >>END_MODULE