##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921446_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2804388 Sequences flagged as poor quality 0 Sequence length 98 %GC 49 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.46510575569429 31.0 31.0 34.0 27.0 34.0 2 30.5664201957789 31.0 31.0 34.0 27.0 34.0 3 30.702877062660374 31.0 31.0 34.0 27.0 34.0 4 34.224304910732755 37.0 35.0 37.0 30.0 37.0 5 34.21425387642509 37.0 35.0 37.0 30.0 37.0 6 34.31685308880226 37.0 35.0 37.0 31.0 37.0 7 34.202828923815105 37.0 35.0 37.0 30.0 37.0 8 34.18307916023033 37.0 35.0 37.0 30.0 37.0 9 35.64196145469172 39.0 37.0 39.0 30.0 39.0 10-11 35.51500380831754 39.0 36.0 39.0 30.0 39.0 12-13 35.37066679075791 39.0 35.0 39.0 30.0 39.0 14-15 36.40311433367994 40.0 36.5 41.0 30.0 41.0 16-17 36.262641082475035 40.0 36.0 41.0 29.5 41.0 18-19 36.08584653764029 39.0 36.0 41.0 28.5 41.0 20-21 35.97170398675219 39.0 36.0 41.0 27.5 41.0 22-23 36.01769138221958 39.0 36.0 41.0 28.5 41.0 24-25 35.89475564722143 39.0 36.0 41.0 27.0 41.0 26-27 35.635568437748276 39.0 36.0 41.0 27.0 41.0 28-29 35.41431766930967 39.0 35.5 40.0 26.5 41.0 30-31 35.163933984883684 39.0 35.0 40.0 25.0 41.0 32-33 34.90015522103218 38.5 35.0 40.0 24.5 41.0 34-35 34.486776437497234 38.0 34.0 40.0 23.0 41.0 36-37 34.11743917032878 38.0 34.0 40.0 21.0 41.0 38-39 33.888733834262595 38.0 33.0 40.0 19.0 41.0 40-41 33.627293726830956 38.0 33.0 40.0 18.0 41.0 42-43 33.33571888055433 38.0 33.0 40.0 15.5 41.0 44-45 33.026223011937006 38.0 32.0 40.0 14.5 41.0 46-47 32.74159620566056 37.0 32.0 40.0 11.0 41.0 48-49 32.535723837072474 37.0 31.0 40.0 9.0 41.0 50-51 31.77720878851286 36.0 30.5 39.0 8.5 40.0 52-53 32.29157966016115 37.0 31.5 39.0 8.5 40.0 54-55 32.73096090840497 37.0 32.0 40.0 8.0 40.5 56-57 32.57789756624262 37.0 32.0 40.0 7.0 41.0 58-59 32.2522109993339 36.5 31.5 39.5 4.0 41.0 60-61 31.78621699279843 36.0 31.0 39.0 2.0 40.5 62-63 31.30431915983095 35.5 31.0 39.0 2.0 40.0 64-65 30.763823158564364 35.0 30.0 38.5 2.0 40.0 66-67 30.2678497055329 35.0 29.0 38.0 2.0 40.0 68-69 29.748422115627367 34.0 29.0 37.0 2.0 39.5 70-71 29.224909142386856 34.0 28.5 36.5 2.0 39.0 72-73 28.68392230319057 34.0 27.5 36.0 2.0 39.0 74-75 28.09329967893173 33.5 26.0 35.5 2.0 37.5 76-77 27.51619925630833 33.0 26.0 35.0 2.0 37.0 78-79 26.955427886583458 33.0 25.0 35.0 2.0 36.5 80-81 26.38281881822344 32.0 24.5 35.0 2.0 36.0 82-83 25.759313261930945 32.0 22.0 34.5 2.0 35.5 84-85 25.148798953639798 31.0 20.0 34.0 2.0 35.0 86-87 24.53095898285116 31.0 17.5 34.0 2.0 35.0 88-89 23.88077683972403 31.0 9.5 34.0 2.0 35.0 90-91 23.14028390508018 30.0 2.0 34.0 2.0 35.0 92-93 22.31764827120926 29.5 2.0 34.0 2.0 35.0 94-95 21.392917278208294 29.0 2.0 34.0 2.0 35.0 96-97 20.47770101712031 29.0 2.0 33.5 2.0 34.5 98 19.847811715069383 27.0 2.0 33.0 2.0 34.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 81252.0 3 14424.0 4 10959.0 5 9152.0 6 8791.0 7 9033.0 8 10122.0 9 12089.0 10 13363.0 11 14512.0 12 16259.0 13 18608.0 14 15704.0 15 15644.0 16 17526.0 17 20320.0 18 23084.0 19 22424.0 20 23116.0 21 25368.0 22 27916.0 23 31225.0 24 35176.0 25 39521.0 26 44834.0 27 51960.0 28 59913.0 29 71227.0 30 84428.0 31 102559.0 32 129025.0 33 166832.0 34 226964.0 35 317220.0 36 424678.0 37 428615.0 38 173813.0 39 6732.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.152474164861204 16.963966775382712 13.041124474796877 24.842434584959207 2 16.19509807454172 18.499433290011027 38.58747401464348 26.71799462080377 3 20.533781558658134 21.68746701908157 27.774295095864538 30.00445632639576 4 14.041803343611011 14.32951173061019 34.262379773643715 37.36630515213509 5 15.586204337264103 35.59791529289521 32.71906123952009 16.0968191303206 6 35.7276639656481 32.70413837816853 16.15836872703632 15.409828929147057 7 31.60012642847409 30.20463290436599 18.87697696105047 19.318263706109448 8 28.27679576750223 33.45639124211926 18.51378953566712 19.753023454711396 9 26.972353193542624 16.439655655090192 18.85580458829357 37.73218656307361 10-11 26.982044626217842 24.693440162454824 25.75081237220172 22.573702839125605 12-13 26.998089576978778 21.74257183522218 26.3947033102706 24.86463527752844 14-15 24.088072441716005 23.40639476712348 23.969704324002674 28.53582846715784 16-17 24.50490997633725 26.572574389663284 24.56011711902881 24.362398514970657 18-19 24.47104277272112 25.956798607988052 25.924099742066065 23.648058877224766 20-21 25.000285506681568 25.00660234201131 25.871170106308412 24.121942044998708 22-23 24.800424191175868 24.677082504184266 25.780161602417508 24.742331702222366 24-25 24.61275585375697 24.856562034890423 25.93064735581358 24.60003475553903 26-27 24.57399298388621 24.993464439502304 26.02500340384482 24.407539172766672 28-29 24.53191059565541 25.334556065443646 25.802342106596825 24.33119123230411 30-31 24.714160148811015 25.13606727964807 25.586161017957544 24.563611553583364 32-33 24.606134237976875 25.215309716220464 25.55820723773093 24.620348808071736 34-35 24.848364209442483 25.096770521042842 25.70127301745736 24.353592252057314 36-37 24.775222660268568 25.04491599712796 25.72424466309683 24.455616679506644 38-39 24.725863920912523 25.209742119316214 25.715084970976992 24.34930898879427 40-41 24.841578654808227 25.1075866520827 25.618354282845306 24.432480410263764 42-43 24.72601058832366 25.043287431954163 25.54742759091347 24.68327438880871 44-45 24.71058491707748 25.06486611662207 25.51430460081618 24.71024436548427 46-47 24.91561027548283 25.131748332860493 25.541640000379946 24.41100139127673 48-49 24.798357795855246 25.185630534531718 25.393128153389465 24.622883516223578 50-51 24.568361247770877 25.370684015736032 25.554157593354304 24.506797143138783 52-53 24.74639099884682 25.393043503528865 25.32861322983832 24.531952267785993 54-55 24.662137324146975 25.09866992404433 25.50507704054424 24.734115711264458 56-57 24.696200401176608 25.218651288767752 25.47772584377127 24.60742246628437 58-59 24.863395028675754 25.174774798022483 25.39205608849952 24.569774084802244 60-61 24.816478483817185 25.112378308732662 25.571139533345722 24.500003674104427 62-63 24.583869132483965 25.309030786388842 25.535401819787218 24.57169826133997 64-65 24.634004360448177 25.28862735522378 25.462009043958915 24.615359240369123 66-67 24.739352402867873 25.182398174879523 25.357869836788936 24.720379585463668 68-69 24.535980915668627 25.220616426484405 25.43122662786898 24.812176029977987 70-71 24.638364531991463 25.07429417843215 25.53243862623668 24.7549026633397 72-73 24.72803565373632 25.047140247857307 25.47959279996862 24.74523129843776 74-75 24.505038442885827 25.44411866469623 25.37681764683549 24.674025245582452 76-77 24.73048522063682 25.087778468156248 25.346953989090988 24.83478232211595 78-79 24.618169534947366 25.071462242861298 25.509889371433157 24.800478850758182 80-81 24.684406909216865 25.194542459417864 25.405481109546614 24.715569521818665 82-83 24.764107723975183 25.09823956068641 25.38946967923308 24.748183036105335 84-85 24.698289894551436 25.199531403386686 25.347892873169837 24.75428582889204 86-87 24.64386892972648 25.169281792492367 25.469003506333966 24.717845771447195 88-89 24.583780921658473 25.01674369932669 25.382104742564394 25.017370636450448 90-91 24.676865811040802 24.947744951305335 25.373987829870348 25.00140140778352 92-93 24.798585500448343 25.149344998811756 25.412172855340987 24.63989664539891 94-95 24.87685986338121 24.976801241852225 25.35892477405278 24.787414120713784 96-97 24.66358573477432 24.931101699407836 25.50277670718061 24.902535858637236 98 24.719271759550278 25.168315164930416 25.146215796571198 24.966197278948112 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 456.0 1 358.0 2 393.5 3 546.0 4 468.5 5 423.5 6 711.5 7 1381.5 8 2010.5 9 2004.0 10 1597.0 11 1357.0 12 1404.5 13 1573.5 14 1764.0 15 2021.5 16 2209.0 17 2278.0 18 2270.5 19 2171.0 20 2069.5 21 1919.0 22 1767.5 23 1748.0 24 1850.0 25 2080.0 26 2447.0 27 3122.0 28 4203.0 29 5715.5 30 7897.0 31 10825.5 32 14778.5 33 19210.0 34 24399.0 35 30421.5 36 37009.0 37 44403.5 38 51900.5 39 59903.0 40 67846.5 41 75480.0 42 84197.0 43 92999.0 44 101483.0 45 110222.0 46 120676.5 47 131809.5 48 136015.0 49 133062.0 50 130877.0 51 130036.5 52 130036.5 53 131000.0 54 128892.0 55 123594.5 56 115926.0 57 107340.5 58 98412.5 59 87668.0 60 75769.5 61 63338.5 62 51054.5 63 39023.0 64 28491.5 65 21361.5 66 16402.5 67 12412.0 68 9259.5 69 6964.5 70 5201.5 71 3888.5 72 2970.5 73 2131.5 74 1601.5 75 1171.5 76 742.5 77 419.5 78 238.5 79 133.0 80 77.0 81 49.0 82 30.5 83 20.0 84 14.5 85 13.0 86 12.0 87 10.5 88 9.0 89 6.5 90 2.5 91 2.0 92 2.5 93 5.0 94 6.5 95 4.5 96 4.5 97 4.5 98 1.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.4751482319850178 2 0.04874503813309713 3 0.0581588567630442 4 0.055270526047037714 5 0.06718043295007681 6 0.06650292327595182 7 0.04357456956740651 8 0.019933047780834892 9 0.012088198922545668 10-11 0.014566457993687035 12-13 0.010590545958690453 14-15 0.015101334052206754 16-17 0.014370336772229805 18-19 0.0548604544021726 20-21 0.08386856597589207 22-23 0.10059235740560865 24-25 0.06978349643487278 26-27 0.08591892420021766 28-29 0.08793362402064193 30-31 0.05842629479230406 32-33 0.03303751121456803 34-35 0.3987322724245005 36-37 0.6246995779471314 38-39 0.5734941099448436 40-41 0.5683236413791529 42-43 0.541419375635611 44-45 0.5276017441238516 46-47 0.5172073193866183 48-49 0.5076152087371648 50-51 0.521076256209911 52-53 0.6018603702483394 54-55 0.5723530410200015 56-57 0.5292955183091641 58-59 0.5072764539001023 60-61 0.5203452589299341 62-63 0.5327722126895422 64-65 0.5510828030928674 66-67 0.5772560715564322 68-69 0.5304009288301048 70-71 0.47981948289608994 72-73 0.4629708870527188 74-75 0.44408976218697266 76-77 0.4579787105065348 78-79 0.45300436316230136 80-81 0.44861837948243966 82-83 0.4679987220028042 84-85 0.43578135407796637 86-87 0.43852705117836766 88-89 0.4649677576711924 90-91 0.4476021149712522 92-93 0.4438223241577129 94-95 0.45469813734761383 96-97 0.4490106219253541 98 0.44405410378307136 >>END_MODULE >>Sequence Length Distribution pass #Length Count 98 2804388.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 58.496157522535896 #Duplication Level Percentage of deduplicated Percentage of total 1 76.6985486532817 44.865703837722506 2 13.097436710943672 15.322994419696109 3 4.299271050311463 7.544725097732931 4 1.9205965291134033 4.493900684170134 5 1.050522828245814 3.0725774421043535 6 0.6342577774383297 2.226098571535563 7 0.41669881272580034 1.7062695572063473 8 0.3115457533955254 1.4579383572881421 9 0.24079751652766318 1.2677156512053867 >10 1.2483105963581629 12.962821485358111 >50 0.06330500587798062 2.503280936668455 >100 0.017546310421691004 1.6180803632714722 >500 6.118186098129842E-4 0.26423046589146654 >1k 5.506367488293711E-4 0.6936631301490184 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT 4177 0.14894515309579132 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3771 0.13446784111185756 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 3.565840390131465E-5 5 0.0 0.0 0.0 3.565840390131465E-5 3.565840390131465E-5 6 0.0 0.0 0.0 3.565840390131465E-5 3.565840390131465E-5 7 0.0 0.0 0.0 3.565840390131465E-5 3.565840390131465E-5 8 0.0 0.0 0.0 3.565840390131465E-5 7.13168078026293E-5 9 0.0 0.0 0.0 7.13168078026293E-5 7.13168078026293E-5 10-11 0.0 0.0 0.0 8.914600975328663E-5 8.914600975328663E-5 12-13 0.0 0.0 0.0 1.0697521170394396E-4 2.3177962535854524E-4 14-15 0.0 0.0 0.0 1.0697521170394396E-4 3.922424429144612E-4 16-17 0.0 0.0 0.0 1.426336156052586E-4 4.635592507170905E-4 18-19 0.0 0.0 0.0 1.961212214572306E-4 4.635592507170905E-4 20-21 0.0 3.565840390131465E-5 0.0 2.1395042340788793E-4 5.170468565690625E-4 22-23 0.0 3.565840390131465E-5 0.0 3.7441324096380385E-4 5.527052604703772E-4 24-25 0.0 5.348760585197198E-5 0.0 4.635592507170905E-4 5.705344624210344E-4 26-27 0.0 7.13168078026293E-5 0.0 6.418512702236638E-4 5.705344624210344E-4 28-29 0.0 1.0697521170394396E-4 0.0 0.0016224573775098167 5.705344624210344E-4 30-31 0.0 1.7829201950657326E-4 0.0 0.006044099461272833 6.061928663223491E-4 32-33 0.0 1.7829201950657326E-4 0.0 0.014780408417094923 6.953388760756357E-4 34-35 0.0 1.7829201950657326E-4 0.0 0.025477929587489317 7.13168078026293E-4 36-37 0.0 1.7829201950657326E-4 0.0 0.04314666872059073 7.13168078026293E-4 38-39 0.0 1.961212214572306E-4 0.0 0.06919513277050109 7.13168078026293E-4 40-41 0.0 2.1395042340788793E-4 0.0 0.09461957475213845 7.13168078026293E-4 42-43 0.0 2.1395042340788793E-4 0.0 0.11977657870451593 7.309972799769504E-4 44-45 0.0 2.1395042340788793E-4 0.0 0.14994358840502814 7.66655683878265E-4 46-47 0.0 2.1395042340788793E-4 0.0 0.18289195360984287 8.023140877795798E-4 48-49 0.0 2.1395042340788793E-4 0.0 0.21293415889670045 8.558016936315517E-4 50-51 0.0 2.1395042340788793E-4 0.0 0.24244148812503835 8.914600975328664E-4 52-53 0.0 2.1395042340788793E-4 0.0 0.2731968614899222 0.0010697521170394395 54-55 0.0 2.1395042340788793E-4 0.0 0.30375611363334887 0.0010697521170394395 56-57 0.0 2.1395042340788793E-4 0.0 0.3396819555639234 0.0010697521170394395 58-59 0.0 2.1395042340788793E-4 0.0 0.3727729543843434 0.0010697521170394395 60-61 0.0 2.1395042340788793E-4 0.0 0.4078073362173851 0.0011054105209407543 62-63 0.0 2.1395042340788793E-4 0.0 0.4424138172036109 0.0011410689248420689 64-65 0.0 2.1395042340788793E-4 0.0 0.4757365956493894 0.0011767273287433837 66-67 0.0 2.1395042340788793E-4 0.0 0.5133027241594244 0.0011767273287433837 68-69 1.7829201950657326E-5 2.1395042340788793E-4 0.0 0.550993657083114 0.0011767273287433837 70-71 3.565840390131465E-5 2.1395042340788793E-4 0.0 0.5900574385570042 0.0012302149345953554 72-73 3.565840390131465E-5 2.1395042340788793E-4 0.0 0.6275700794611873 0.0012837025404473276 74-75 3.565840390131465E-5 2.1395042340788793E-4 0.0 0.6671865661955478 0.0012837025404473276 76-77 3.565840390131465E-5 2.1395042340788793E-4 0.0 0.7066247609104019 0.0013193609443486421 78-79 3.565840390131465E-5 2.1395042340788793E-4 0.0 0.7493435287841768 0.001355019348249957 80-81 3.565840390131465E-5 2.1395042340788793E-4 0.0 0.792365393091113 0.001372848550200614 82-83 3.565840390131465E-5 2.1395042340788793E-4 0.0 0.8331942655581182 0.0014976529638552154 84-85 3.565840390131465E-5 2.1395042340788793E-4 0.0 0.8779099040503668 0.0014976529638552154 86 3.565840390131465E-5 2.1395042340788793E-4 0.0 0.9111791948902933 0.0015333113677565302 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTACATG 8395 0.0 24.731834 1 GTACCTG 3115 0.0 24.3852 1 TACATGG 8605 0.0 23.337006 2 GTATAGG 555 0.0 22.396042 1 TACCTGG 3200 0.0 22.350979 2 ACATGGG 8680 0.0 21.97331 3 GTATCAA 10020 0.0 19.526379 1 GAGTACA 6860 0.0 19.192978 1 GTATAAG 675 0.0 19.096542 1 AGTACAT 6265 0.0 19.027168 2 GTATACG 170 1.0121207E-4 18.956127 1 CATGGGG 6935 0.0 18.841372 4 ACCTGGG 3940 0.0 17.454882 3 ATACCGT 350 2.1100277E-9 17.025063 6 TCAACGC 11310 0.0 16.985 4 TATCAAC 11515 0.0 16.961628 2 CAACGCA 11385 0.0 16.83284 5 AGAGTAC 7885 0.0 16.791172 10-11 ATCAACG 11615 0.0 16.578756 3 AACGCAG 11750 0.0 16.384184 6 >>END_MODULE