##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921444_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5348041 Sequences flagged as poor quality 0 Sequence length 98 %GC 50 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.71253567427774 31.0 31.0 34.0 26.0 34.0 2 29.787281735499036 31.0 30.0 34.0 26.0 34.0 3 29.919838684856753 31.0 31.0 34.0 26.0 34.0 4 33.40748266514785 37.0 35.0 37.0 28.0 37.0 5 33.366884434879985 37.0 35.0 37.0 28.0 37.0 6 33.46873817908277 37.0 35.0 37.0 28.0 37.0 7 33.32875196730915 37.0 35.0 37.0 27.0 37.0 8 33.29824397382144 37.0 35.0 37.0 27.0 37.0 9 34.65534089959296 38.0 35.0 39.0 27.0 39.0 10-11 34.5021405034105 38.0 35.0 39.0 27.0 39.0 12-13 34.31056025935478 38.0 35.0 39.0 27.0 39.0 14-15 35.19808589724724 39.0 35.5 40.0 26.0 41.0 16-17 35.028553633003185 39.0 35.0 40.0 25.0 41.0 18-19 34.81609724009221 39.0 34.5 40.0 24.5 41.0 20-21 34.67813204872588 39.0 34.0 40.0 24.0 41.0 22-23 34.70074004668251 39.0 34.5 40.0 23.5 41.0 24-25 34.53082998054802 39.0 34.0 40.0 22.0 41.0 26-27 34.216163731729054 38.0 34.0 40.0 18.5 41.0 28-29 33.94417516619637 38.0 33.5 40.0 17.5 41.0 30-31 33.65787285475186 38.0 33.0 40.0 16.0 41.0 32-33 33.3503268767012 38.0 33.0 40.0 15.5 41.0 34-35 32.89361740121289 38.0 32.0 40.0 9.0 41.0 36-37 32.47258977633118 38.0 31.0 40.0 8.5 41.0 38-39 32.19122375838181 37.0 31.0 40.0 8.0 41.0 40-41 31.89305579370091 37.0 30.0 40.0 4.5 41.0 42-43 31.55227671216432 37.0 30.0 40.0 2.0 40.5 44-45 31.192394373939916 36.5 30.0 39.0 2.0 40.0 46-47 30.85641807906858 36.0 29.0 39.0 2.0 40.0 48-49 30.601281198106 36.0 28.5 39.0 2.0 40.0 50-51 29.901173158545344 35.0 28.0 38.5 2.0 39.5 52-53 30.504386279013193 35.5 29.5 38.5 2.0 39.5 54-55 30.91288043603256 36.0 30.0 39.0 2.0 40.0 56-57 30.70587585248505 36.0 29.5 39.0 2.0 40.0 58-59 30.329769723156573 35.0 29.0 39.0 2.0 40.0 60-61 29.805838530407677 35.0 28.0 38.5 2.0 40.0 62-63 29.281941929764564 34.5 27.5 38.0 2.0 40.0 64-65 28.68552148347404 34.0 26.0 37.5 2.0 40.0 66-67 28.138755948206082 34.0 26.0 37.0 2.0 39.0 68-69 27.57002264941499 33.5 25.0 36.0 2.0 39.0 70-71 26.992755665111765 33.0 23.5 36.0 2.0 39.0 72-73 26.397864002912467 32.5 22.0 35.0 2.0 37.5 74-75 25.754381744642572 32.0 20.0 35.0 2.0 37.0 76-77 25.13526392187345 31.5 18.0 35.0 2.0 36.5 78-79 24.516522218135577 31.0 13.0 34.0 2.0 36.0 80-81 23.86658180070048 31.0 7.0 34.0 2.0 35.0 82-83 23.187558584535907 30.0 2.0 34.0 2.0 35.0 84-85 22.505838586502982 29.5 2.0 34.0 2.0 35.0 86-87 21.827957751258825 29.0 2.0 34.0 2.0 35.0 88-89 21.101749687408905 29.0 2.0 34.0 2.0 35.0 90-91 20.286422261908612 27.5 2.0 33.0 2.0 34.5 92-93 19.390841337977776 26.0 2.0 33.0 2.0 34.0 94-95 18.42033110815717 25.0 2.0 32.0 2.0 34.0 96-97 17.48717240574633 23.5 2.0 32.0 2.0 34.0 98 16.853546373335583 19.0 2.0 32.0 2.0 34.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 228703.0 3 38885.0 4 29372.0 5 24957.0 6 23502.0 7 24624.0 8 28139.0 9 32280.0 10 35855.0 11 38896.0 12 41386.0 13 43729.0 14 38495.0 15 39733.0 16 43449.0 17 49395.0 18 55306.0 19 56592.0 20 60483.0 21 65876.0 22 71881.0 23 78652.0 24 87152.0 25 97644.0 26 109288.0 27 123910.0 28 141007.0 29 162324.0 30 189903.0 31 225527.0 32 273726.0 33 342320.0 34 437584.0 35 564913.0 36 675105.0 37 577439.0 38 184859.0 39 5150.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.76813723888225 16.542481840880395 12.947301083593366 24.742079836643992 2 16.390435733890445 18.328666608800283 38.10989799552832 27.170999661780947 3 21.645405201941976 21.132559553085503 26.561337465831958 30.660697779140563 4 14.084298885861354 13.731246673532402 33.65813687882164 38.52631756178461 5 16.141060656576258 35.37568116615571 31.952534744478733 16.530723432789298 6 36.67680753492706 31.82681567381579 15.787947334841364 15.708429456415782 7 32.70058535999556 29.424417516018224 18.08020327946006 19.794793844526158 8 28.877763418981168 32.57792556325029 18.01759461688507 20.526716400883473 9 27.074831611202804 16.498380722311172 18.380606367974544 38.04618129851148 10-11 27.714866567414216 24.200078656415275 25.034984899875766 23.05006987629474 12-13 27.856971014605225 21.139163349776208 25.741946685962898 25.261918949655666 14-15 24.576371268957644 22.84863386215335 23.576742018025044 28.998252850863963 16-17 25.12069615537676 25.89010141918033 24.088485953316358 24.900716472126554 18-19 25.052372121521095 25.483855729362766 25.211235392749987 24.25253675636615 20-21 25.81205362197202 24.319025844428165 25.043130187762983 24.825790345836833 22-23 25.41276226832364 24.043338961980616 25.0243406865103 25.519558083185444 24-25 25.45884934188941 24.20186742137162 25.139507432834023 25.199775803904945 26-27 25.348352677500824 24.258823941112563 25.404942823648057 24.987880557738556 28-29 25.04978330391217 24.898220488994525 25.147834096449646 24.904162110643664 30-31 25.301036781826813 24.513787525766137 24.93883290297789 25.24634278942916 32-33 25.233678247301857 24.54984182039161 24.927054455158505 25.28942547714803 34-35 25.513342995288763 24.41870613128773 25.124246590819943 24.943704282603562 36-37 25.473034487992553 24.32949105221626 25.168177971429422 25.029296488361762 38-39 25.315628526925256 24.560394777817162 25.134704046822293 24.989272648435293 40-41 25.39128716768706 24.607514431796957 25.010524776296222 24.99067362421976 42-43 25.280980332809712 24.56516139871905 24.77299010509083 25.380868163380406 44-45 25.39594520764169 24.336824837423563 24.844150701064645 25.4230792538701 46-47 25.643483628807722 24.578917172505932 24.91665900231678 24.86094019636957 48-49 25.545100141176746 24.56827617924947 24.751564531223977 25.135059148349807 50-51 24.95824386933192 24.85802727672613 25.112096585232578 25.071632268709365 52-53 25.32663731422839 24.921261882175976 24.675934244445504 25.076166559150124 54-55 25.181239401441648 24.518647681995827 24.934398325229214 25.36571459133331 56-57 25.35489591420468 24.556329018242742 24.932203133439963 25.156571934112616 58-59 25.69691387011695 24.474919799212227 24.74417989475147 25.083986435919357 60-61 25.41983218174442 24.512712823795717 25.162187924353454 24.905267070106408 62-63 25.123744421635298 24.723628062416047 25.040552841592856 25.112074674355796 64-65 25.125730760855884 24.823911150231 24.907861660310466 25.142496428602644 66-67 25.348897194778758 24.596234675792992 24.65636683682649 25.39850129260176 68-69 25.08667190954439 24.658522354108474 24.89550418537613 25.359301550971015 70-71 25.301339803487476 24.45636749904539 24.944183463279227 25.298109234187915 72-73 25.40361619604675 24.343149799282273 25.029091464616393 25.22414254005458 74-75 25.012528170781923 25.032956270910407 24.793339162601857 25.16117639570582 76-77 25.27558031176867 24.475854476657254 24.67688682013328 25.5716783914408 78-79 25.22604906133319 24.487694577010092 24.964959074245453 25.321297287411266 80-81 25.34987611502812 24.550432886228336 24.873103690561994 25.226587308181553 82-83 25.457717098352767 24.36855614197949 24.95394611681582 25.219780642851923 84-85 25.302661744939105 24.637687825633193 24.78136702506989 25.278283404357822 86-87 25.261942763203965 24.649439691160342 24.915226615904334 25.173390929731355 88-89 25.09024094487213 24.527508534884433 24.69995273160434 25.682297788639097 90-91 25.283009515000565 24.26363167543492 24.798223198110087 25.655135611454426 92-93 25.50775661629085 24.59058639018408 24.823650537837814 25.07800645568725 94-95 25.551395477747768 24.342877122246826 24.81316266227621 25.2925647377292 96-97 25.16384503706886 24.305489315711323 25.16097220980877 25.369693437411044 98 25.376654066313048 24.68698607464719 24.531166770965527 25.405193088074235 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 486.0 1 352.5 2 282.0 3 351.0 4 345.5 5 371.5 6 615.5 7 1266.0 8 1782.0 9 1810.0 10 1599.0 11 1518.0 12 1792.0 13 2183.5 14 2524.0 15 2971.0 16 3444.5 17 3649.0 18 3687.5 19 3490.0 20 3222.5 21 2971.0 22 2659.0 23 2529.0 24 2610.0 25 2792.5 26 3147.0 27 3798.0 28 4806.5 29 6254.0 30 8356.0 31 11438.0 32 15767.5 33 21266.0 34 28354.5 35 37914.5 36 49292.0 37 62413.0 38 76574.0 39 91520.5 40 107727.5 41 124059.5 42 141474.5 43 161007.5 44 180153.0 45 201248.0 46 233300.5 47 265426.5 48 275122.0 49 266305.5 50 260049.0 51 259862.5 52 262093.5 53 265728.0 54 263865.0 55 254176.5 56 239330.5 57 223083.0 58 205303.5 59 186010.0 60 165480.5 61 140602.0 62 113585.0 63 87353.5 64 64273.5 65 47965.5 66 36468.5 67 27505.0 68 20570.0 69 15520.0 70 11639.5 71 8502.5 72 6350.0 73 4585.5 74 3450.0 75 2574.5 76 1645.5 77 1018.0 78 637.0 79 371.0 80 210.0 81 119.5 82 93.5 83 65.5 84 40.0 85 30.5 86 21.5 87 18.0 88 18.5 89 16.5 90 11.0 91 13.5 92 12.0 93 7.5 94 9.0 95 6.5 96 4.0 97 2.5 98 3.0 99 1.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.44350819300001626 2 0.04474535629027526 3 0.051757269624522324 4 0.0496630448420272 5 0.05914315166992923 6 0.062284488843671916 7 0.039266714671783554 8 0.017782212215650555 9 0.011125569157005341 10-11 0.013724651699566253 12-13 0.010050409112420791 14-15 0.014182763370737062 16-17 0.013631159521776293 18-19 0.053823446753680455 20-21 0.08107641657945405 22-23 0.0960164665902898 24-25 0.06754809845324672 26-27 0.0814223376372769 28-29 0.08193654461512169 30-31 0.05323444603360371 32-33 0.029674417230533573 34-35 0.37260372536410996 36-37 0.5848403181651001 38-39 0.5365422591188063 40-41 0.5319798408426563 42-43 0.506213396643743 44-45 0.49202128405522694 46-47 0.48205501790281713 48-49 0.472705800123821 50-51 0.48743081812573985 52-53 0.565711818589274 54-55 0.5352707655008628 56-57 0.4944894775488819 58-59 0.4731919594483288 60-61 0.48567316518328857 62-63 0.4971727030514538 64-65 0.5169089017829145 66-67 0.5408335500793655 68-69 0.4961816859668802 70-71 0.44693000670712885 72-73 0.43054082794054865 74-75 0.4121883134403793 76-77 0.4259223143577246 78-79 0.420387577432559 80-81 0.4176202089699761 82-83 0.4356735485012176 84-85 0.4037272713503879 86-87 0.4072893233241854 88-89 0.4324948144563589 90-91 0.41683487467654046 92-93 0.4121041704803684 94-95 0.42170581713939737 96-97 0.4165450489253915 98 0.4113655822758277 >>END_MODULE >>Sequence Length Distribution pass #Length Count 98 5348041.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 49.91129672256857 #Duplication Level Percentage of deduplicated Percentage of total 1 73.8124267812685 36.8407393489276 2 13.361542319117573 13.337838067212685 3 5.0324740099102785 7.535319106717392 4 2.376806696847691 4.745180171942128 5 1.3903649167660448 3.4697457956679707 6 0.8574575608982945 2.5678091249402812 7 0.5670223826943175 1.9810575673695734 8 0.39755502738146736 1.5873989548148237 9 0.3148581183408131 1.4143479273016142 >10 1.7070820633752375 15.63910607344497 >50 0.12762318692531813 4.376410046673847 >100 0.05260128683686041 4.427759538381316 >500 0.001168194321553055 0.37443772604258 >1k 8.290376649453973E-4 0.9297714096618621 >5k 1.5073412089910846E-4 0.46405813793305206 >10k+ 3.7683530224777114E-5 0.3090210029684288 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT 16430 0.30721529621781135 No Hit GCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTT 7261 0.13576934058658113 No Hit GCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGT 6315 0.11808062054872055 No Hit CTGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGC 6053 0.1131816304325266 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 9.349217778996085E-5 2 0.0 0.0 0.0 0.0 9.349217778996085E-5 3 0.0 0.0 0.0 0.0 9.349217778996085E-5 4 0.0 0.0 0.0 1.869843555799217E-5 9.349217778996085E-5 5 0.0 0.0 0.0 1.869843555799217E-5 1.3088904890594518E-4 6 0.0 0.0 0.0 1.869843555799217E-5 2.430796622538982E-4 7 0.0 0.0 0.0 1.869843555799217E-5 2.430796622538982E-4 8 0.0 0.0 0.0 1.869843555799217E-5 2.430796622538982E-4 9 0.0 0.0 0.0 3.739687111598434E-5 2.430796622538982E-4 10-11 0.0 0.0 0.0 6.544452445297259E-5 2.430796622538982E-4 12-13 0.0 3.739687111598434E-5 0.0 2.991749689278747E-4 4.768101067288003E-4 14-15 0.0 3.739687111598434E-5 0.0 3.3657184004385905E-4 5.796515022977572E-4 16-17 5.609530667397651E-5 3.739687111598434E-5 1.869843555799217E-5 3.646194933808473E-4 6.918421156457103E-4 18-19 5.609530667397651E-5 5.609530667397651E-5 1.869843555799217E-5 4.113655822758277E-4 7.105405512037024E-4 20-21 6.544452445297259E-5 5.609530667397651E-5 1.869843555799217E-5 4.955085422867925E-4 7.946835112146672E-4 22-23 7.479374223196868E-5 5.609530667397651E-5 1.869843555799217E-5 5.796515022977572E-4 8.414296001096476E-4 24-25 7.479374223196868E-5 5.609530667397651E-5 1.869843555799217E-5 6.63794462308722E-4 8.601280356676398E-4 26-27 7.479374223196868E-5 5.609530667397651E-5 1.869843555799217E-5 7.853342934356711E-4 9.629694312365967E-4 28-29 7.479374223196868E-5 5.609530667397651E-5 1.869843555799217E-5 0.0012621444001644714 9.723186490155928E-4 30-31 7.479374223196868E-5 5.609530667397651E-5 1.869843555799217E-5 0.002776717680361837 9.816678667945889E-4 32-33 7.479374223196868E-5 5.609530667397651E-5 1.869843555799217E-5 0.005974150160778498 0.001093858480142542 34-35 7.479374223196868E-5 5.609530667397651E-5 1.869843555799217E-5 0.010751600445845498 0.0011219061334795302 36-37 7.479374223196868E-5 5.609530667397651E-5 1.869843555799217E-5 0.016800544348855966 0.0011219061334795302 38-39 7.479374223196868E-5 6.544452445297259E-5 1.869843555799217E-5 0.026420889443442935 0.0011873506579325027 40-41 7.479374223196868E-5 7.479374223196868E-5 1.869843555799217E-5 0.03669567978255964 0.0011966998757114988 42-43 9.349217778996085E-5 9.349217778996085E-5 1.869843555799217E-5 0.04709200995280328 0.0012527951823854753 44-45 9.349217778996085E-5 9.349217778996085E-5 1.869843555799217E-5 0.058498055643178504 0.0013088904890594518 46-47 9.349217778996085E-5 9.349217778996085E-5 1.869843555799217E-5 0.07182069097824792 0.0013743350135124244 48-49 9.349217778996085E-5 9.349217778996085E-5 1.869843555799217E-5 0.0840588170509538 0.0014117318846284088 50-51 1.1219061334795302E-4 9.349217778996085E-5 1.869843555799217E-5 0.09665221339926153 0.001439779537965397 52-53 1.1219061334795302E-4 9.349217778996085E-5 1.869843555799217E-5 0.10903057773865234 0.0015239224979763618 54-55 1.1219061334795302E-4 9.349217778996085E-5 1.869843555799217E-5 0.1220259904514569 0.0015613193690923461 56-57 1.1219061334795302E-4 1.1219061334795302E-4 1.869843555799217E-5 0.13758308883570639 0.0016174146757663226 58-59 1.1219061334795302E-4 1.3088904890594518E-4 1.869843555799217E-5 0.15149472489085256 0.0016267638935453187 60-61 1.1219061334795302E-4 1.6828592002192952E-4 1.869843555799217E-5 0.16517263050152384 0.0016267638935453187 62-63 1.1219061334795302E-4 1.6828592002192952E-4 1.869843555799217E-5 0.17936474309003989 0.0016454623291033109 64-65 1.1219061334795302E-4 1.6828592002192952E-4 1.869843555799217E-5 0.193397918976313 0.0017389545068932717 66-67 1.1219061334795302E-4 2.2438122669590603E-4 1.869843555799217E-5 0.20860909630273963 0.00176700216023026 68-69 1.1219061334795302E-4 2.2438122669590603E-4 1.869843555799217E-5 0.22485803680263483 0.001776351378009256 70-71 1.1219061334795302E-4 2.2438122669590603E-4 1.869843555799217E-5 0.2419203592493027 0.001879192773578213 72-73 1.1219061334795302E-4 2.2438122669590603E-4 1.869843555799217E-5 0.25866480829148464 0.0020474786936001427 74-75 1.1219061334795302E-4 2.2438122669590603E-4 1.869843555799217E-5 0.2760356549248594 0.002140970871390103 76-77 1.1219061334795302E-4 2.2438122669590603E-4 1.869843555799217E-5 0.29387396244718395 0.002225113831401068 78-79 1.1219061334795302E-4 2.430796622538982E-4 1.869843555799217E-5 0.31405892363203647 0.0022625107025170525 80-81 1.1219061334795302E-4 2.6177809781189037E-4 1.869843555799217E-5 0.3345804566569329 0.002309256791412033 82-83 1.1219061334795302E-4 2.6177809781189037E-4 1.869843555799217E-5 0.35444754443729953 0.0023560028803070133 84-85 1.215398311269491E-4 2.7112731559088645E-4 1.869843555799217E-5 0.37459510875103613 0.0023747013158650055 86 1.3088904890594518E-4 2.8047653336988254E-4 1.869843555799217E-5 0.3901615563530646 0.0023747013158650055 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTACATG 20210 0.0 25.352427 1 TACATGG 20560 0.0 24.22299 2 GTACCTG 5535 0.0 23.37111 1 ACATGGG 20975 0.0 22.912916 3 TACCTGG 5790 0.0 21.780869 2 AGTACAT 14110 0.0 21.288021 2 GTATAGG 1090 0.0 21.117098 1 GAGTACA 15690 0.0 21.06649 1 CATGGGG 16160 0.0 20.148092 4 GTGTAGC 2840 0.0 17.344275 1 GTATACG 320 1.2210876E-8 17.263226 1 AGAGTAC 15935 0.0 16.276323 10-11 ATGGGGG 8145 0.0 15.539427 5 TACCGTA 630 0.0 15.277631 7 ACCTGGG 8055 0.0 15.14388 3 GTACCGT 980 0.0 14.970603 6 TAGACAG 2470 0.0 14.295876 5 TATATCG 385 1.243261E-7 14.293465 5 GTATCAA 29005 0.0 14.22086 1 GTCTTAG 2145 0.0 14.164698 1 >>END_MODULE