##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921442_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6221348 Sequences flagged as poor quality 0 Sequence length 101 %GC 50 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.839486394266967 33.0 31.0 34.0 30.0 34.0 2 31.94285370308814 34.0 31.0 34.0 30.0 34.0 3 32.07578646942753 34.0 31.0 34.0 30.0 34.0 4 35.63864053256626 37.0 35.0 37.0 35.0 37.0 5 35.4335558788867 37.0 35.0 37.0 33.0 37.0 6 35.47443367578859 37.0 35.0 37.0 33.0 37.0 7 35.39769725146383 37.0 35.0 37.0 33.0 37.0 8 35.34891457606937 37.0 35.0 37.0 33.0 37.0 9 36.94173834995245 39.0 37.0 39.0 33.0 39.0 10-11 36.841952981893954 39.0 37.0 39.0 33.0 39.0 12-13 36.72580427907264 39.0 37.0 39.0 33.0 39.0 14-15 37.978527081269206 40.0 38.0 41.0 33.0 41.0 16-17 37.87982564228845 40.0 38.0 41.0 33.0 41.0 18-19 37.76028040868314 40.0 38.0 41.0 32.5 41.0 20-21 37.62921628881715 40.0 38.0 41.0 32.0 41.0 22-23 37.59757451279047 40.0 38.0 41.0 32.0 41.0 24-25 37.654734954546825 40.0 38.0 41.0 32.0 41.0 26-27 37.53937940780679 40.0 38.0 41.0 32.0 41.0 28-29 37.398139760064865 40.0 37.0 41.0 32.0 41.0 30-31 37.25898294067459 40.0 37.0 41.0 31.5 41.0 32-33 37.09540094847611 40.0 37.0 41.0 31.0 41.0 34-35 36.93634675314739 40.0 37.0 41.0 31.0 41.0 36-37 36.83850581899614 40.0 36.5 41.0 30.5 41.0 38-39 36.79571469077119 40.0 36.0 41.0 30.0 41.0 40-41 36.632206798269436 39.5 36.0 41.0 30.0 41.0 42-43 36.375654842005304 39.0 36.0 41.0 30.0 41.0 44-45 36.159605603158674 39.0 35.0 40.0 29.5 41.0 46-47 35.887379792932336 39.0 35.0 40.0 29.0 41.0 48-49 35.53684940948489 38.0 35.0 40.0 28.0 41.0 50-51 35.22742032755602 38.0 34.5 40.0 27.0 41.0 52-53 34.898127945904974 38.0 34.0 40.0 26.0 41.0 54-55 34.54573695282759 38.0 34.0 40.0 26.0 41.0 56-57 34.11927045392735 37.0 33.0 40.0 24.5 41.0 58-59 33.6967002167376 37.0 33.0 39.5 23.5 41.0 60-61 33.20737210006577 36.0 32.0 39.0 22.5 40.0 62-63 32.744032402624 35.5 31.5 39.0 21.5 40.0 64-65 32.194496353523384 35.0 31.0 38.0 20.0 40.0 66-67 31.61969721031519 35.0 30.5 38.0 18.0 40.0 68-69 31.074069638927128 34.5 30.0 37.0 15.5 39.0 70-71 30.47733296706759 34.0 29.0 36.5 12.0 39.0 72-73 29.89565332143452 34.0 29.0 36.0 8.0 38.5 74-75 29.3463475278991 34.0 28.5 35.0 7.0 37.5 76-77 28.156801227000965 31.5 27.0 34.0 6.0 36.0 78-79 29.08520741807081 33.5 29.0 35.0 4.0 36.0 80-81 29.093497100628355 34.0 29.0 35.0 2.0 36.0 82-83 28.722110465448967 34.0 29.0 35.0 2.0 36.0 84-85 28.189753008511982 33.0 27.5 35.0 2.0 35.0 86-87 27.64888204292703 33.0 26.5 35.0 2.0 35.0 88-89 27.060137047469453 32.5 25.5 34.5 2.0 35.0 90-91 26.525842148679033 32.0 25.0 34.0 2.0 35.0 92-93 26.028585605563293 32.0 24.0 34.0 2.0 35.0 94-95 25.45121081476233 32.0 21.5 34.0 2.0 35.0 96-97 24.58709969286399 31.0 18.0 34.0 2.0 35.0 98-99 23.480672918473616 31.0 2.0 34.0 2.0 35.0 100-101 19.919134566978087 25.5 2.0 32.0 2.0 34.5 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 40436.0 3 21283.0 4 12800.0 5 10092.0 6 8910.0 7 9075.0 8 10706.0 9 13049.0 10 15246.0 11 18287.0 12 21329.0 13 25177.0 14 28190.0 15 31501.0 16 35602.0 17 40495.0 18 42168.0 19 41008.0 20 42291.0 21 45130.0 22 48344.0 23 53478.0 24 60313.0 25 70351.0 26 83570.0 27 100368.0 28 121931.0 29 147784.0 30 180092.0 31 222918.0 32 281636.0 33 371777.0 34 511499.0 35 739583.0 36 1075643.0 37 1184301.0 38 443440.0 39 11545.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.84114297285606 17.256418230827535 13.224996844028247 24.677441952288156 2 16.291051392720675 19.08608873832488 37.9305899621754 26.692269906779043 3 21.447423518944348 21.98520009291133 27.17468375184959 29.392692636294736 4 14.251638145206632 14.448357094426381 34.366986983612755 36.93301777675423 5 15.804528879571823 35.660546527279266 32.50960648531389 16.025318107835027 6 35.85973358304126 32.75785670434106 15.94997070317369 15.432439009443986 7 31.951232733661872 29.712666965105644 18.97079410557823 19.365306195654256 8 28.23148056374723 33.05207221772413 18.461704808894115 20.25474240963452 9 26.785980601886273 16.79978261705449 18.86102726955791 37.55320951150133 10-11 27.328922332103524 24.44970749879594 25.589955794794722 22.631414374305812 12-13 27.602037783247457 21.458609910948944 26.195517176108456 24.743835129695142 14-15 24.25345482738951 23.138869340330444 24.118286296566417 28.489389535713627 16-17 24.71183537143434 26.23506477051345 24.508424572468304 24.544675285583907 18-19 24.625682246014257 26.052604116333526 25.51688934248231 23.804824295169897 20-21 25.4512833597898 24.674487362715368 25.311926665981744 24.56230261151309 22-23 24.95897105219995 24.45714432734395 25.44844808788862 25.13543653256748 24-25 25.166613217195366 24.629066162834718 25.410058206996815 24.7942624129731 26-27 24.9697430474121 24.55955394628153 25.889043156832297 24.58165984947407 28-29 24.661470041860195 25.389708676410542 25.496125683002564 24.45269559872669 30-31 24.93927784741908 24.82982888492982 25.231208723061414 24.99968454458968 32-33 24.828368425866525 24.91611918221246 25.32954757163164 24.925964820289376 34-35 25.230333501530573 24.785026083967985 25.46291347304903 24.52172694145241 36-37 25.052416116731145 24.68421525166126 25.663300487641692 24.600068143965903 38-39 24.89119113176174 24.959853293508957 25.564614052255585 24.584341522473714 40-41 24.981621969232624 25.04379980104702 25.326851619256235 24.647726610464122 42-43 24.775418108262247 25.060021385230556 25.042090518807235 25.122469987699958 44-45 24.95063250755835 24.614571044377172 25.250547007168866 25.184249440895616 46-47 25.217565011459254 25.00656364728173 25.283024631563546 24.492846709695467 48-49 25.153944026798158 24.93852646932287 25.217235944311795 24.690293559567177 50-51 24.430970690580033 25.172020901795417 25.64962052924488 24.747387878379676 52-53 24.961538715014537 25.344528081520085 24.954064261971702 24.73986894149368 54-55 24.810828727221406 24.809100731994853 25.24977166351448 25.130298877269258 56-57 25.037328481474642 24.820020378963857 25.24359355813848 24.899057581423026 58-59 25.60800414384345 24.73886593227838 24.940633173813577 24.7124967500646 60-61 25.088287448936182 24.950842021024062 25.529879411147487 24.430991118892265 62-63 24.672951779889857 25.112930604447005 25.40947040011652 24.80464721554662 64-65 24.725428363259923 25.401606756559623 25.149658390422314 24.723306489758144 66-67 25.07664233605985 24.916294613694568 24.902425789934032 25.104637260311552 68-69 24.7401034238597 25.06055575145946 25.142242989376555 25.057097835304276 70-71 25.141755862902244 24.819308698228486 25.158474631037684 24.880460807831586 72-73 25.15409965539818 24.625041322632967 25.416908385310883 24.803950636657966 74-75 24.60084747493542 25.594682222629984 25.04512935097199 24.759340951462608 76-77 24.891301299000258 24.884845147472685 25.020134165438034 25.20371938808902 78-79 24.85001331436696 24.96034039741395 25.295736981778177 24.89390930644091 80-81 25.144693323956034 24.996074702925558 25.115815357563008 24.7434166155554 82-83 25.059187804249433 24.749562231323544 25.44243536852558 24.748814595901447 84-85 24.823146612511263 25.15863831653517 25.21572721058294 24.80248786037063 86-87 24.85978414812986 25.248822489378707 25.15139996997185 24.73999339251958 88-89 24.629467667262897 25.103989129053634 24.942503359810345 25.324039843873123 90-91 24.892207213224513 24.78637795313609 25.046657900539326 25.274756933100072 92-93 25.263132164668257 25.161779816385405 25.095050491641306 24.48003752730503 94-95 25.168908600473895 24.912302558183647 25.088975408386677 24.82981343295578 96-97 24.546620614946864 24.915718617487144 25.69941391034028 24.83824685722571 98-99 24.855870215798216 25.270823817047468 24.948207157865227 24.92509880928909 100-101 25.297286305499807 24.33869620815788 25.191095114739053 25.172922371603264 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 174.0 1 164.5 2 256.0 3 363.0 4 287.5 5 251.0 6 515.0 7 1267.0 8 1866.0 9 1758.5 10 1310.0 11 958.5 12 883.0 13 938.0 14 1024.0 15 1094.5 16 1172.0 17 1324.5 18 1463.0 19 1569.0 20 1689.0 21 1781.0 22 1909.0 23 2165.5 24 2440.5 25 2859.0 26 3578.5 27 4553.5 28 6103.0 29 8599.5 30 12408.5 31 17257.0 32 23414.5 33 31026.0 34 39897.0 35 50468.0 36 63285.0 37 77573.0 38 92226.5 39 107476.0 40 124814.5 41 142668.0 42 160736.5 43 179002.5 44 196531.0 45 215074.0 46 235340.0 47 271936.5 48 325936.0 49 333878.5 50 300764.5 51 288057.5 52 287750.5 53 287417.5 54 285938.0 55 278251.0 56 262068.0 57 242316.0 58 222803.5 59 200263.0 60 175573.5 61 149968.5 62 122454.5 63 93682.5 64 68890.0 65 51313.5 66 38882.0 67 29830.0 68 22022.5 69 16012.5 70 11933.0 71 9094.0 72 6630.5 73 4762.5 74 3512.0 75 2404.0 76 1560.0 77 903.5 78 496.5 79 273.5 80 152.5 81 82.5 82 50.0 83 22.5 84 10.0 85 6.0 86 5.0 87 3.5 88 1.5 89 1.0 90 1.5 91 1.5 92 1.5 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.3025228616049126 2 0.0 3 0.005834748353572249 4 0.05368611432763446 5 4.8221060773324367E-4 6 0.06350713703846819 7 0.07321564394083083 8 0.10229294358714543 9 0.08983583622070329 10-11 0.09489101075844013 12-13 0.09432843171608468 14-15 0.0630811843349705 16-17 0.03471916375679355 18-19 0.03804641695015293 20-21 0.027277046710777148 22-23 0.04127722802196566 24-25 0.03340915827245157 26-27 0.02073505613252948 28-29 0.02374887243086225 30-31 0.0029495215506350073 32-33 0.005127506128896824 34-35 0.007667148662958575 36-37 0.01116317556902459 38-39 0.01666841334064579 40-41 0.02066272454136949 42-43 0.003729095366470418 44-45 0.014602944570855063 46-47 0.02383727770894668 48-49 0.0028048583683150338 50-51 0.0071849380552253305 52-53 0.0025235688471373086 54-55 0.004275600721901428 56-57 0.0036487269318482107 58-59 0.0011331949281731227 60-61 0.005360574589301225 62-63 0.015028897274352759 64-65 0.006919722220972047 66-67 0.03799015904591738 68-69 0.059962889071628854 70-71 0.012762507418006516 72-73 0.032083079101185144 74-75 0.05000524002193737 76-77 0.2887155645368174 78-79 0.07039471188559135 80-81 0.03332878983782936 82-83 0.02795214156160369 84-85 0.019674192795516344 86-87 0.1153929984305652 88-89 0.5085473437589411 90-91 0.1292002954986604 92-93 0.047296823775168986 94-95 0.00848690669610509 96-97 0.005971374692430001 98-99 0.01048808071819805 100-101 0.007924327653749638 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 6221348.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.96941419989446 #Duplication Level Percentage of deduplicated Percentage of total 1 65.81721001341452 27.62309748534435 2 16.46060400608903 13.81683815023985 3 6.753507808145262 8.503222995068095 4 3.3123480451315572 5.56069228321348 5 1.9314425154031607 4.053075546612064 6 1.216280648752605 3.0627951798488655 7 0.8273228232881529 2.4305577973324604 8 0.5932309561774259 1.991804457280786 9 0.43851574073972044 1.656382388065097 >10 2.4011416529132905 18.271472748028064 >50 0.16866810007053626 4.8612190605136805 >100 0.07700179915735697 5.3444459254930905 >500 0.0015357293410540299 0.41667508067593656 >1k 8.446306545412027E-4 0.8728425338785121 >5k 2.303538146541547E-4 0.7094886918298883 >10k+ 1.1517690732707735E-4 0.8253896765758091 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT 28518 0.4583894037112214 No Hit GCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTT 11758 0.18899441085758262 No Hit GCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGT 10949 0.1759907981357095 No Hit CTGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGC 9582 0.15401806810999802 No Hit GTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTAT 9040 0.14530612979695076 No Hit ACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGC 6911 0.11108525033481491 No Hit TGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCT 6788 0.10910818684310859 No Hit GTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGG 6222 0.10001048004387474 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.6073686924441455E-5 2 0.0 0.0 0.0 0.0 1.6073686924441455E-5 3 0.0 1.6073686924441455E-5 0.0 0.0 1.6073686924441455E-5 4 0.0 1.6073686924441455E-5 0.0 0.0 1.6073686924441455E-5 5 0.0 1.6073686924441455E-5 0.0 0.0 1.6073686924441455E-5 6 0.0 1.6073686924441455E-5 0.0 0.0 1.6073686924441455E-5 7 0.0 1.6073686924441455E-5 0.0 0.0 1.6073686924441455E-5 8 0.0 4.8221060773324366E-5 0.0 0.0 1.6073686924441455E-5 9 0.0 4.8221060773324366E-5 0.0 1.6073686924441455E-5 3.214737384888291E-5 10-11 0.0 4.8221060773324366E-5 0.0 4.8221060773324366E-5 3.214737384888291E-5 12-13 0.0 4.8221060773324366E-5 0.0 8.036843462220728E-5 5.62579042355451E-5 14-15 0.0 5.62579042355451E-5 0.0 8.840527808442801E-5 7.233159115998655E-5 16-17 0.0 6.429474769776582E-5 0.0 1.7681055616885602E-4 9.644212154664873E-5 18-19 0.0 6.429474769776582E-5 0.0 2.089579300177389E-4 9.644212154664873E-5 20-21 0.0 6.429474769776582E-5 0.0 2.571789907910633E-4 1.2858949539553164E-4 22-23 0.0 6.429474769776582E-5 0.0 4.018421731110364E-4 1.3662633885775237E-4 24-25 0.0 6.429474769776582E-5 0.0 4.982842946576851E-4 1.446631823199731E-4 26-27 0.0 6.429474769776582E-5 0.0 6.349106335154374E-4 2.250316169421804E-4 28-29 0.0 6.429474769776582E-5 0.0 0.0012055265193331092 2.250316169421804E-4 30-31 0.0 6.429474769776582E-5 0.0 0.0026039372817595156 2.250316169421804E-4 32-33 0.0 6.429474769776582E-5 0.0 0.006582174795558776 2.250316169421804E-4 34-35 0.0 6.429474769776582E-5 0.0 0.011195322942873474 2.4110530386662184E-4 36-37 0.0 7.233159115998655E-5 0.0 0.01755246612149007 2.4110530386662184E-4 38-39 0.0 1.0447896500886947E-4 0.0 0.02749404148425711 2.571789907910633E-4 40-41 0.0 1.2858949539553164E-4 0.0 0.03894654341792164 2.571789907910633E-4 42-43 0.0 1.2858949539553164E-4 0.0 0.05031064007350176 2.571789907910633E-4 44-45 0.0 1.2858949539553164E-4 0.0 0.06226142630182398 2.571789907910633E-4 46-47 0.0 1.3662633885775237E-4 0.0 0.07564277066642149 2.6521583425328404E-4 48-49 0.0 1.446631823199731E-4 0.0 0.08769803585975258 2.893263646399462E-4 50-51 0.0 1.446631823199731E-4 0.0 0.1002274748173547 3.2147373848882913E-4 52-53 0.0 1.446631823199731E-4 0.0 0.11233096107145911 3.4558426887549133E-4 54-55 0.0 1.446631823199731E-4 0.0 0.12553549487988777 3.696947992621535E-4 56-57 0.0 1.446631823199731E-4 0.0 0.1413600396570004 3.696947992621535E-4 58-59 0.0 1.446631823199731E-4 0.0 0.15558525258513106 3.7773164272437423E-4 60-61 8.036843462220728E-6 1.7681055616885602E-4 0.0 0.1703408971817683 3.8576848618659493E-4 62-63 1.6073686924441455E-5 1.7681055616885602E-4 0.0 0.18513672599571668 3.8576848618659493E-4 64-65 1.6073686924441455E-5 1.7681055616885602E-4 0.0 0.1992494231153763 4.018421731110364E-4 66-67 1.6073686924441455E-5 2.089579300177389E-4 0.0 0.21494537839709338 4.018421731110364E-4 68-69 1.6073686924441455E-5 2.089579300177389E-4 0.0 0.2319433023196902 4.018421731110364E-4 70-71 1.6073686924441455E-5 2.3306846040440108E-4 0.0 0.24840275773031822 4.179158600354778E-4 72-73 1.6073686924441455E-5 2.6521583425328404E-4 0.0 0.26466129205439076 5.304316685065681E-4 74-75 1.6073686924441455E-5 2.7325267771550473E-4 0.0 0.2818440633766187 5.304316685065681E-4 76-77 1.6073686924441455E-5 2.893263646399462E-4 0.0 0.2989143188903755 5.304316685065681E-4 78-79 1.6073686924441455E-5 2.893263646399462E-4 0.0 0.3190707222936251 5.304316685065681E-4 80-81 1.6073686924441455E-5 2.893263646399462E-4 0.0 0.3394682310007413 5.384685119687888E-4 82-83 2.4110530386662183E-5 2.893263646399462E-4 0.0 0.3579770814942357 5.62579042355451E-4 84-85 3.214737384888291E-5 2.893263646399462E-4 0.0 0.37693599522161436 5.62579042355451E-4 86-87 3.214737384888291E-5 2.893263646399462E-4 0.0 0.39616012478324636 5.706158858176716E-4 88-89 3.214737384888291E-5 2.893263646399462E-4 0.0 0.41625223343879814 5.866895727421131E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTACATG 21305 0.0 26.511076 1 TACATGG 22110 0.0 24.964212 2 GTACCTG 6530 0.0 24.942335 1 ACATGGG 22535 0.0 23.608665 3 TACCTGG 6925 0.0 22.498552 2 GAGTACA 16110 0.0 21.816496 1 CATGGGG 17085 0.0 21.380892 4 AGTACAT 15495 0.0 20.999044 2 GTATAGC 1245 0.0 17.213427 1 AGAGTAC 17015 0.0 16.659132 10-11 ACCTGGG 8975 0.0 16.407343 3 GTATAGG 1550 0.0 16.284271 1 ATGGGGG 7975 0.0 16.252335 5 GTGTAGC 3035 0.0 15.220791 1 TAGACTG 2490 0.0 14.872332 5 CGTATAC 385 8.0806785E-8 14.805787 3 ATGGGGA 7925 0.0 14.737358 5 ACACCGT 1365 0.0 14.608912 6 TATACTG 2145 0.0 14.608326 5 TACACTG 4510 0.0 14.316806 5 >>END_MODULE