##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921440_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5642764 Sequences flagged as poor quality 0 Sequence length 101 %GC 50 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.91557807485835 33.0 31.0 34.0 30.0 34.0 2 32.02939109273399 34.0 31.0 34.0 30.0 34.0 3 32.16029183570321 34.0 31.0 34.0 30.0 34.0 4 35.698179119311035 37.0 35.0 37.0 35.0 37.0 5 35.500718619456705 37.0 35.0 37.0 33.0 37.0 6 35.53566833558873 37.0 35.0 37.0 33.0 37.0 7 35.4673576637265 37.0 35.0 37.0 33.0 37.0 8 35.41837758942249 37.0 35.0 37.0 33.0 37.0 9 37.04037134992709 39.0 37.0 39.0 34.0 39.0 10-11 36.950967203306746 39.0 37.0 39.0 33.0 39.0 12-13 36.82622957472614 39.0 37.0 39.0 33.0 39.0 14-15 38.118923279442484 40.0 38.0 41.0 33.0 41.0 16-17 38.01439675662495 40.0 38.0 41.0 33.0 41.0 18-19 37.89954524059486 40.0 38.0 41.0 33.0 41.0 20-21 37.78327571381685 40.0 38.0 41.0 33.0 41.0 22-23 37.74870170008882 40.0 38.0 41.0 32.5 41.0 24-25 37.802805770363605 40.0 38.0 41.0 33.0 41.0 26-27 37.69229459179934 40.0 38.0 41.0 32.5 41.0 28-29 37.554959767943515 40.0 38.0 41.0 32.0 41.0 30-31 37.42110276098735 40.0 37.5 41.0 32.0 41.0 32-33 37.26502588093353 40.0 37.0 41.0 31.5 41.0 34-35 37.118491221677886 40.0 37.0 41.0 31.0 41.0 36-37 37.01829449184832 40.0 37.0 41.0 31.0 41.0 38-39 36.98324526774468 40.0 37.0 41.0 31.0 41.0 40-41 36.82315094163073 40.0 36.5 41.0 30.5 41.0 42-43 36.58921097887489 39.5 36.0 41.0 30.0 41.0 44-45 36.38472413519332 39.0 36.0 41.0 30.0 41.0 46-47 36.116836004482906 39.0 35.0 40.0 29.5 41.0 48-49 35.78390474951637 39.0 35.0 40.0 28.5 41.0 50-51 35.50091798983618 38.5 35.0 40.0 28.0 41.0 52-53 35.18065614652677 38.0 34.0 40.0 27.0 41.0 54-55 34.83607607902794 38.0 34.0 40.0 26.5 41.0 56-57 34.43168472046678 37.5 34.0 40.0 26.0 41.0 58-59 34.02168201611834 37.0 33.0 40.0 25.0 41.0 60-61 33.572049708263535 36.5 33.0 39.0 23.5 40.5 62-63 33.11094766678174 36.0 32.0 39.0 22.5 40.0 64-65 32.57530414172912 35.0 31.5 38.5 22.0 40.0 66-67 32.02292723920405 35.0 31.0 38.0 20.0 40.0 68-69 31.4961131636907 35.0 31.0 37.0 18.5 39.0 70-71 30.92011140285151 34.0 30.0 36.5 16.5 39.0 72-73 30.354758235503027 34.0 29.0 36.0 12.5 39.0 74-75 29.819395158117544 34.0 29.0 35.5 8.0 37.5 76-77 28.572941026773403 32.0 27.5 34.5 7.5 36.0 78-79 29.50675493428398 34.0 29.0 35.0 7.0 36.5 80-81 29.530591922681865 34.0 29.0 35.0 7.0 36.0 82-83 29.18167639121537 34.0 29.0 35.0 2.0 36.0 84-85 28.673709373633205 33.5 29.0 35.0 2.0 35.5 86-87 28.138171116140953 33.0 27.5 35.0 2.0 35.0 88-89 27.577141273319246 33.0 26.5 35.0 2.0 35.0 90-91 27.074859501478354 32.5 25.5 34.5 2.0 35.0 92-93 26.606604139389844 32.0 25.0 34.0 2.0 35.0 94-95 26.07175889333667 32.0 24.5 34.0 2.0 35.0 96-97 25.255782715704573 32.0 21.5 34.0 2.0 35.0 98-99 24.18853925133144 31.0 10.0 34.0 2.0 35.0 100-101 20.585286572325195 27.0 2.0 32.0 2.0 34.5 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 37404.0 3 19512.0 4 11892.0 5 8878.0 6 7713.0 7 7972.0 8 9155.0 9 11156.0 10 13221.0 11 15493.0 12 17858.0 13 20999.0 14 23425.0 15 25848.0 16 29327.0 17 33194.0 18 34633.0 19 33662.0 20 34626.0 21 36195.0 22 39722.0 23 43462.0 24 49202.0 25 57874.0 26 68671.0 27 82840.0 28 100548.0 29 122450.0 30 150162.0 31 186525.0 32 238813.0 33 315928.0 34 445802.0 35 664004.0 36 1000898.0 37 1173604.0 38 458692.0 39 11404.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.32024539004696 16.79540369258505 12.950023246448804 24.93432767091918 2 16.651325485170034 18.36869307311098 38.22619553112624 26.753785910592754 3 20.99971129557396 21.49981329029292 27.024683785356324 30.475791628776793 4 14.236953492087784 14.22579940987989 33.70467501455439 37.832572083477935 5 16.101893160301373 35.02197693529413 32.36445311793893 16.511676786465568 6 36.62639915605095 32.10091922564235 16.10929771458839 15.163383903718309 7 32.89900160039045 29.176018830125933 18.308810802068024 19.616168767415594 8 28.88269002806163 33.30086264063192 18.065141732710906 19.751305598595533 9 27.023912805557394 16.36515280330821 18.2620569330214 38.34887745811299 10-11 27.31014166307973 24.47104399767657 25.500037295862803 22.718777043380896 12-13 27.32757732219359 21.272155566628523 26.33224316447808 25.068023946699807 14-15 24.209543246729723 23.03564511065078 23.72125248075489 29.03355916186461 16-17 25.006743311578933 26.173382750897062 24.24328432203769 24.576589615486313 18-19 24.945770391959226 25.48820386911001 25.55583852390158 24.010187215029184 20-21 25.377423393664944 24.668524187448405 25.584488862409156 24.369563556477498 22-23 25.139616965509028 24.30369695087185 25.525145946267948 25.031540137351183 24-25 24.93909427952909 24.54751603492392 25.578328457182426 24.935061228364564 26-27 24.927008809814865 24.733021477662696 25.60839285908949 24.731576853432948 28-29 24.87173028554979 24.887010091230366 25.55013061397698 24.691129009242864 30-31 25.030974267654184 24.81837674811217 25.364916836904772 24.785732147328876 32-33 24.877575929862008 24.75002556501338 25.38798120045505 24.984417304669563 34-35 24.955390895914572 24.790689900973813 25.53602703556287 24.717892167548747 36-37 25.042670025206775 24.75320508162337 25.443874604892404 24.76025028827745 38-39 25.00944727921903 24.854453408429457 25.3986734105706 24.73742590178091 40-41 25.067540913401835 24.76619805389642 25.410973042040258 24.755287990661483 42-43 25.00813681871257 24.717125369391187 25.34714065588829 24.92759715600796 44-45 24.970265148645012 24.746840564035637 25.361486373014568 24.921407914304783 46-47 25.023733092470472 24.80181061936126 25.41245859061725 24.76199769755102 48-49 25.051197599829226 24.843093124559545 25.246985054846625 24.8587242207646 50-51 24.852787793770876 25.027227058157354 25.302049761048778 24.81793538702299 52-53 25.01256727913821 24.97371128123865 25.184269142604528 24.829452297018616 54-55 24.961205318327288 24.756492039203717 25.285306616221177 24.99699602624782 56-57 24.968217016964008 24.924743868633467 25.295754314506162 24.81128479989636 58-59 25.116380497414536 24.830338253083898 25.214897199885588 24.838384049615982 60-61 25.09127682278499 24.843219728447796 25.289461973174426 24.776041475592788 62-63 24.864982755563243 24.996054122637602 25.25907421076471 24.879888911034445 64-65 24.992667102770977 24.84013397890004 25.289935224154487 24.8772636941745 66-67 25.008478739505293 24.918257505124917 25.154048901717356 24.919214853652434 68-69 24.90677495885579 24.939633582896917 25.238136360984527 24.915455097262768 70-71 24.9151996234009 24.792833273721683 25.30301800366319 24.988949099214224 72-73 25.07864379365074 24.81728669028802 25.13204800404755 24.972021512013686 74-75 24.861089969549948 25.08706949415605 25.11881655879373 24.933023977500277 76-77 25.006562138810146 24.82648442779794 25.147173684814494 25.01977974857742 78-79 24.92607392554239 24.81611371163076 25.312717093829583 24.945095268997267 80-81 24.87682617903617 25.01326691852317 25.23282367270319 24.87708322973747 82-83 25.06943528567559 24.869274824045277 25.159327124751652 24.90196276552748 84-85 24.960094014257233 24.992079068400955 25.045387491973827 25.002439425367985 86-87 24.94712837830345 24.955112682934836 25.20741670928659 24.890342229475127 88-89 24.85189942879948 24.838964569889217 25.176838763242195 25.132297238069107 90-91 24.86360045814169 24.927739939909937 25.174706667675768 25.0339529342726 92-93 25.00235595371001 25.041008665565656 25.20018514294367 24.756450237780665 94-95 25.07417629793235 24.882729581424314 25.07478775060033 24.968306370043003 96-97 24.930291768801727 24.848332647165318 25.235974746417643 24.985400837615312 98-99 24.932045356561932 24.897324749775464 25.124205039450604 25.046424854212002 100-101 25.42663405960174 24.32633614218793 25.224962251890197 25.022067546320137 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 313.0 1 260.0 2 513.0 3 801.5 4 558.5 5 381.0 6 825.5 7 1872.5 8 2679.5 9 2493.5 10 1684.5 11 1092.5 12 988.0 13 1006.0 14 1026.5 15 1108.5 16 1173.5 17 1271.5 18 1385.0 19 1451.0 20 1504.5 21 1570.0 22 1680.5 23 1843.0 24 2028.5 25 2338.5 26 2766.5 27 3354.5 28 4265.0 29 5663.0 30 7874.5 31 10927.5 32 15774.0 33 22612.0 34 30775.5 35 41014.0 36 53849.5 37 67988.0 38 82350.5 39 97067.5 40 114294.0 41 131548.5 42 148730.0 43 167200.0 44 184906.5 45 203007.0 46 222086.0 47 241602.5 48 260578.5 49 270673.5 50 270585.0 51 271362.5 52 271921.0 53 270274.5 54 266739.5 55 258609.0 56 244207.0 57 224730.0 58 206064.0 59 185540.5 60 162009.5 61 137888.0 62 112646.5 63 86181.5 64 62527.0 65 46224.0 66 35155.5 67 27231.0 68 20770.5 69 15445.0 70 11430.5 71 8566.0 72 6363.0 73 4793.0 74 3668.5 75 2718.0 76 1888.5 77 1147.0 78 664.5 79 376.0 80 202.0 81 95.0 82 59.5 83 39.5 84 16.5 85 8.0 86 4.5 87 2.5 88 3.0 89 2.5 90 0.5 91 0.5 92 0.5 93 0.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.3234053382349501 2 0.0 3 0.005582370625459438 4 0.06332003252306848 5 5.316543452818512E-4 6 0.06310737078495574 7 0.07336829964889546 8 0.1043105825442992 9 0.09139138195395023 10-11 0.09586613936007247 12-13 0.09589272207733657 14-15 0.06386054777410502 16-17 0.03525754399794143 18-19 0.03835886101208557 20-21 0.0275219732740905 22-23 0.041327264439909236 24-25 0.03320181386285161 26-27 0.020530718633634155 28-29 0.0235877311190048 30-31 0.0031367606371629224 32-33 0.005086159903196377 34-35 0.007407717210927127 36-37 0.011164741250918877 38-39 0.016445841080718598 40-41 0.020973763921369033 42-43 0.0035886668306524955 44-45 0.014452137285911658 46-47 0.024447238977210458 48-49 0.002932959804804879 50-51 0.007071002792248622 52-53 0.002383583648013633 54-55 0.0042177911392360205 56-57 0.0035532232076337057 58-59 0.0011696395596200726 60-61 0.0055469270024406485 62-63 0.014168588301761336 64-65 0.006787453808098301 66-67 0.038722158148028166 68-69 0.061193415141941085 70-71 0.012228049941482579 72-73 0.03230686238162716 74-75 0.05090590356073726 76-77 0.31354315012997175 78-79 0.07728481999247178 80-81 0.03284737763266371 82-83 0.027291589724468365 84-85 0.018900311974769813 86-87 0.11885132888775785 88-89 0.5320796687580768 90-91 0.13095532614867464 92-93 0.04957676769753263 94-95 0.008205198728849904 96-97 0.005617814248478228 98-99 0.010305233392713217 100-101 0.007593796231775775 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 5642764.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 48.012746924880574 #Duplication Level Percentage of deduplicated Percentage of total 1 69.46574077369685 33.35241031716865 2 16.050134949600395 15.412221348906893 3 5.839160373594985 8.410623878136214 4 2.7381579402271035 5.258659368979048 5 1.5016536270037644 3.6049257781080377 6 0.9567010043642027 2.7560305923190516 7 0.6245275523209972 2.0989698322042205 8 0.45874592535060127 1.7620521613342857 9 0.3480347855417856 1.5039095471345554 >10 1.8207981233483703 16.00080233249561 >50 0.13668894065935072 4.489042517696914 >100 0.05799195039102493 4.573094369223416 >500 0.001294268187969362 0.40105938494246146 >1k 3.6978571260687116E-4 0.37619857135052753 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 5.3165434528185125E-5 2 0.0 0.0 0.0 0.0 5.3165434528185125E-5 3 0.0 0.0 0.0 1.772181150939504E-5 5.3165434528185125E-5 4 0.0 0.0 0.0 3.544362301879008E-5 5.3165434528185125E-5 5 0.0 1.772181150939504E-5 0.0 3.544362301879008E-5 5.3165434528185125E-5 6 0.0 1.772181150939504E-5 0.0 3.544362301879008E-5 1.0633086905637025E-4 7 0.0 1.772181150939504E-5 0.0 3.544362301879008E-5 1.0633086905637025E-4 8 0.0 1.772181150939504E-5 0.0 3.544362301879008E-5 1.0633086905637025E-4 9 0.0 1.772181150939504E-5 0.0 1.240526805657653E-4 1.0633086905637025E-4 10-11 8.86090575469752E-5 1.772181150939504E-5 0.0 1.5063539782985785E-4 1.240526805657653E-4 12-13 8.86090575469752E-5 1.772181150939504E-5 0.0 1.5949630358455538E-4 2.481053611315306E-4 14-15 9.746996330167273E-5 1.772181150939504E-5 0.0 1.683572093392529E-4 3.101317014144132E-4 16-17 1.0633086905637025E-4 1.772181150939504E-5 0.0 1.772181150939504E-4 3.544362301879008E-4 18-19 1.0633086905637025E-4 1.772181150939504E-5 0.0 1.772181150939504E-4 3.721580416972959E-4 20-21 1.0633086905637025E-4 1.772181150939504E-5 0.0 2.658271726409256E-4 4.341843819801785E-4 22-23 1.0633086905637025E-4 1.772181150939504E-5 0.0 3.4557532443320327E-4 5.582370625459437E-4 24-25 1.329135863204628E-4 1.772181150939504E-5 0.0 3.544362301879008E-4 6.114024970741289E-4 26-27 1.5063539782985785E-4 1.772181150939504E-5 0.0 4.1646257047078344E-4 6.468461200929191E-4 28-29 1.5949630358455538E-4 1.772181150939504E-5 0.0 7.443160833945917E-4 6.911506488664066E-4 30-31 1.5949630358455538E-4 3.544362301879008E-5 0.0 0.0023038354962213554 7.088724603758016E-4 32-33 1.5949630358455538E-4 3.544362301879008E-5 0.0 0.0056355360599876225 7.354551776398942E-4 34-35 1.683572093392529E-4 6.202634028288265E-5 0.0 0.009525473686299836 7.620378949039868E-4 36-37 1.772181150939504E-4 8.86090575469752E-5 0.0 0.015382532390154895 7.708988006586842E-4 38-39 1.772181150939504E-4 8.86090575469752E-5 0.0 0.02368520108230647 7.797597064133818E-4 40-41 1.772181150939504E-4 8.86090575469752E-5 0.0 0.03293598669021068 7.797597064133818E-4 42-43 1.772181150939504E-4 8.86090575469752E-5 0.0 0.041929806031228666 7.886206121680793E-4 44-45 1.8607902084864791E-4 8.86090575469752E-5 0.0 0.05229706576422477 9.03812386979147E-4 46-47 1.9493992660334544E-4 8.86090575469752E-5 0.0 0.06343522429787954 9.924214445261224E-4 48-49 1.9493992660334544E-4 8.86090575469752E-5 0.0 0.07467085279483601 0.0010455868790543075 50-51 1.9493992660334544E-4 8.86090575469752E-5 0.0 0.08601281216084883 0.0010455868790543075 52-53 1.9493992660334544E-4 8.86090575469752E-5 0.0 0.09739907605563515 0.0011253350308465851 54-55 1.9493992660334544E-4 9.746996330167273E-5 0.0 0.10963598690287242 0.0012050831826388628 56-57 1.9493992660334544E-4 1.0633086905637025E-4 0.0 0.12202353314793957 0.0012139440883935605 58-59 1.9493992660334544E-4 1.0633086905637025E-4 0.0 0.1350845082303637 0.001222804994148258 60-61 1.9493992660334544E-4 1.240526805657653E-4 0.0 0.1475783853444872 0.001258248617167048 62-63 1.9493992660334544E-4 1.329135863204628E-4 0.0 0.16064822133266604 0.001258248617167048 64-65 1.9493992660334544E-4 1.4177449207516032E-4 0.0 0.1740459108337687 0.0012759704286764428 66-67 1.9493992660334544E-4 1.4177449207516032E-4 0.0 0.18893223250166052 0.0013025531459405354 68-69 1.9493992660334544E-4 1.4177449207516032E-4 0.0 0.2040312159076651 0.001311414051695233 70-71 1.9493992660334544E-4 1.6835720933925288E-4 0.0 0.22027325615602567 0.0014000231092422084 72-73 1.9493992660334544E-4 1.9493992660334544E-4 0.0 0.23594819843608558 0.0015063539782985786 74-75 1.9493992660334544E-4 2.126617381127405E-4 0.0 0.2521990995902008 0.0015949630358455535 76-77 2.3038354962213553E-4 2.126617381127405E-4 0.0 0.26822847810044864 0.0016126848473549487 78-79 2.3038354962213553E-4 2.126617381127405E-4 0.0 0.28427557842220585 0.0016392675646190412 80-81 2.3038354962213553E-4 2.126617381127405E-4 0.0 0.3016340927956583 0.0016747111876378312 82-83 2.3038354962213553E-4 2.126617381127405E-4 0.0 0.3189748853576013 0.0017899029624488991 84-85 2.3038354962213553E-4 2.126617381127405E-4 0.0 0.3370068285684108 0.0017899029624488991 86-87 2.3038354962213553E-4 2.126617381127405E-4 0.0 0.3560843586582746 0.0018164856797129917 88-89 2.3038354962213553E-4 2.126617381127405E-4 0.0 0.37574670852794834 0.0018430683969770842 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTACCTG 7350 0.0 34.993736 1 TACCTGG 7430 0.0 32.73081 2 GTATCAA 11435 0.0 32.48945 1 TCAACGC 13910 0.0 26.05507 4 GTACATG 17705 0.0 25.503296 1 CAACGCA 14240 0.0 25.438396 5 TATCAAC 14535 0.0 25.162355 2 ATCAACG 14820 0.0 24.550919 3 ACCTGGG 9710 0.0 24.312202 3 TACATGG 18165 0.0 23.84707 2 AACGCAG 15385 0.0 23.731396 6 GGTATCA 7585 0.0 23.673893 1 ACATGGG 18685 0.0 22.319712 3 ACGCAGA 17705 0.0 20.43455 7 GAGTACA 13315 0.0 20.103842 1 AGAGTAC 14910 0.0 19.121422 10-11 CGCAGAG 19015 0.0 19.026918 8 CATGGGG 14825 0.0 18.968014 4 AGTACAT 12740 0.0 18.864994 2 TAACGCA 460 0.0 17.5544 4 >>END_MODULE