##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921438_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4387398 Sequences flagged as poor quality 0 Sequence length 101 %GC 48 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.84767053273945 33.0 31.0 34.0 30.0 34.0 2 31.965231784305868 34.0 31.0 34.0 30.0 34.0 3 32.08851533414566 34.0 31.0 34.0 30.0 34.0 4 35.639252696017095 37.0 35.0 37.0 35.0 37.0 5 35.43590073205121 37.0 35.0 37.0 33.0 37.0 6 35.47600149336805 37.0 35.0 37.0 33.0 37.0 7 35.40344778385731 37.0 35.0 37.0 33.0 37.0 8 35.35373585893051 37.0 35.0 37.0 33.0 37.0 9 36.95970846501731 39.0 37.0 39.0 33.0 39.0 10-11 36.86516666598289 39.0 37.0 39.0 33.0 39.0 12-13 36.73657712384424 39.0 37.0 39.0 33.0 39.0 14-15 38.00182511365506 40.0 38.0 41.0 33.0 41.0 16-17 37.90402603091856 40.0 38.0 41.0 33.0 41.0 18-19 37.80370529411738 40.0 38.0 41.0 33.0 41.0 20-21 37.68805895886355 40.0 38.0 41.0 32.0 41.0 22-23 37.6497934538877 40.0 38.0 41.0 32.5 41.0 24-25 37.703405526464664 40.0 38.0 41.0 32.0 41.0 26-27 37.58223154133725 40.0 38.0 41.0 32.0 41.0 28-29 37.43528111650687 40.0 37.5 41.0 32.0 41.0 30-31 37.277902187127765 40.0 37.0 41.0 31.5 41.0 32-33 37.09126172277965 40.0 37.0 41.0 31.0 41.0 34-35 36.926674192767564 40.0 37.0 41.0 31.0 41.0 36-37 36.80496036603016 40.0 36.5 41.0 30.5 41.0 38-39 36.74439827433025 40.0 36.0 41.0 30.0 41.0 40-41 36.56138570059065 39.5 36.0 41.0 30.0 41.0 42-43 36.2998151751904 39.0 35.5 41.0 30.0 41.0 44-45 36.060819419619556 39.0 35.0 40.5 29.5 41.0 46-47 35.73736859523572 39.0 35.0 40.0 28.0 41.0 48-49 35.36495036465805 39.0 35.0 40.0 27.0 41.0 50-51 35.06347714522366 38.0 34.5 40.0 26.0 41.0 52-53 34.73453069450275 38.0 34.0 40.0 26.0 41.0 54-55 34.391013876561914 38.0 34.0 40.0 24.0 41.0 56-57 33.99767003130329 37.5 33.0 40.0 23.5 41.0 58-59 33.589955025735065 37.0 33.0 40.0 22.5 41.0 60-61 33.14878966986811 36.5 32.0 39.0 21.5 40.5 62-63 32.692504076448046 36.0 32.0 39.0 19.5 40.0 64-65 32.1576858311008 35.0 31.0 39.0 18.0 40.0 66-67 31.609216100294525 35.0 31.0 38.0 14.5 40.0 68-69 31.089801062041786 35.0 30.0 37.5 10.0 39.5 70-71 30.515832618786806 34.0 29.5 37.0 7.5 39.0 72-73 29.946162964928185 34.0 29.0 36.0 7.0 39.0 74-75 29.398339630915636 34.0 28.5 36.0 4.0 38.5 76-77 28.183863875581835 32.0 27.0 34.5 2.0 36.0 78-79 29.092540954798267 34.0 29.0 35.0 2.0 37.0 80-81 29.096224915086346 34.0 29.0 35.0 2.0 37.0 82-83 28.72146030517405 34.0 29.0 35.0 2.0 36.0 84-85 28.183511502717558 33.5 27.5 35.0 2.0 36.0 86-87 27.617775273635992 33.0 26.5 35.0 2.0 35.0 88-89 27.02905412273972 33.0 25.5 35.0 2.0 35.0 90-91 26.497109220544843 32.0 25.0 34.0 2.0 35.0 92-93 26.004961254939715 32.0 24.0 34.0 2.0 35.0 94-95 25.445034049794433 32.0 21.5 34.0 2.0 35.0 96-97 24.617025170727615 31.5 17.5 34.0 2.0 35.0 98-99 23.537496940099803 31.0 2.0 34.0 2.0 35.0 100-101 20.038388128909208 25.5 2.0 32.0 2.0 34.5 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 30160.0 3 15814.0 4 9381.0 5 7167.0 6 6434.0 7 6889.0 8 7843.0 9 9555.0 10 11313.0 11 13392.0 12 16488.0 13 19426.0 14 22110.0 15 25557.0 16 29819.0 17 36642.0 18 36574.0 19 31054.0 20 30417.0 21 31977.0 22 34350.0 23 36867.0 24 41491.0 25 47692.0 26 56428.0 27 68051.0 28 80975.0 29 98122.0 30 119362.0 31 146425.0 32 185319.0 33 242401.0 34 335088.0 35 486943.0 36 725893.0 37 872023.0 38 396325.0 39 15630.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.86929781943928 17.56762596096139 12.988322711554401 24.574753508044925 2 16.255078750548734 19.00734786312981 38.72842172057333 26.009151665748124 3 20.679632917442895 22.52648825554183 27.826487138639287 28.967391688375987 4 13.81772304208937 14.786891683955602 35.058722323924826 36.33666295003021 5 14.994488728104205 35.9766393184804 33.21455303995193 15.814318913463458 6 34.997646335444635 33.61509647743994 16.400412164979112 14.986845022136306 7 31.12895209416256 30.439265145935497 19.112245598532716 19.31953716136923 8 27.98203998451235 34.247328277715376 18.48310014016004 19.287531597612237 9 26.668201247938523 16.616435365421594 18.88420124246331 37.831162144176574 10-11 26.730985921598162 25.26835748632461 26.012875410170423 21.987781181906804 12-13 26.765015048842432 22.098898585574215 26.863025019805608 24.27306134577774 14-15 23.499659377629218 23.714546821720734 24.580357116384747 28.2054366842653 16-17 23.951137302729222 26.98767625162695 25.058953371175214 24.00223307446861 18-19 23.8348727148689 26.094420923793088 26.899723285262432 23.170983076075576 20-21 24.338727054210377 25.277014933607955 27.03013476075597 23.354123251425698 22-23 23.998752730539632 25.032036811550583 26.975189142599156 23.994021315310633 24-25 23.733283355398182 25.27940732370551 27.1174188494108 23.8698904714855 26-27 23.799900079300514 25.43487902653575 27.01750390432781 23.747716989835922 28-29 23.745121349155063 25.608068065094503 26.935145447886338 23.7116651378641 30-31 23.94037829748694 25.487356976555876 26.86864003889442 23.70362468706276 32-33 23.720825116179835 25.47503352963327 26.9001797060698 23.903961648117097 34-35 23.900556158465157 25.533814338945522 27.018590358597866 23.54703914399145 36-37 23.89642806057349 25.57132281832113 26.83576851776396 23.696480603341424 38-39 23.850789149764918 25.5872275242289 26.82144911671237 23.74053420929381 40-41 23.99608067579618 25.503249138458813 26.824254260914326 23.676415924830682 42-43 23.90112651612869 25.477606323606878 26.786389538942796 23.83487762132164 44-45 23.888372754630762 25.59400936245129 26.725990382236077 23.791627500681876 46-47 23.87778076939474 25.65818676246731 26.629522487017056 23.834509981120895 48-49 23.94906138324185 25.748604403114868 26.432228347378288 23.87010586626499 50-51 23.858841973813522 25.976647732796398 26.278030544698943 23.88647974869114 52-53 23.989911307395364 25.972753555271506 26.2401396944992 23.79719544283393 54-55 23.977454543879727 25.776176765930998 26.319823314301942 23.926545375887333 56-57 23.90208183514218 26.017092770275585 26.248331808075015 23.83249358650722 58-59 24.033235525699034 25.907053078809355 26.307043642596838 23.75266775289477 60-61 24.04873135878848 25.799262369264635 26.33044949750459 23.821556774442296 62-63 23.880695173183508 25.89921087599216 26.43652050498283 23.7835734458415 64-65 23.92509907451434 25.80856337509363 26.357422280129345 23.908915270262693 66-67 23.890636112136544 25.980091155574414 26.275153117332305 23.854119614956737 68-69 23.98201763183423 25.877968349088924 26.288289190270024 23.85172482880682 70-71 23.921551821509205 25.731315752311357 26.35319415059095 23.993938275588487 72-73 24.052378542654353 25.77512352101673 26.187663938019075 23.98483399830985 74-75 23.81430937825526 26.00595000282769 26.145783734773815 24.033956884143237 76-77 23.92837813509969 25.86740353594381 26.209293354174466 23.994924974782037 78-79 23.910264758899636 25.82980498616298 26.256730622069487 24.003199632867904 80-81 23.86489425226923 25.998921102053668 26.133110744131784 24.003073901545317 82-83 23.99591173990896 25.949040836547567 26.134565131053677 23.920482292489794 84-85 24.012920777881984 25.96716620563911 26.083680718774403 23.9362322977045 86-87 23.919747680888843 25.982339807246476 26.214265184939578 23.883647326925104 88-89 23.91030368213109 25.851388347420173 26.168922276075683 24.06938569437305 90-91 23.920238902163767 25.891478441065246 26.16387209559738 24.024410561173607 92-93 23.969319151085497 25.996071229572433 26.240054508867782 23.794555110474292 94-95 23.919441314625693 25.898304837482815 26.16797579583193 24.014278052059566 96-97 23.933449977388438 25.897647121037505 26.194856963631857 23.9740459379422 98-99 23.94146642358029 25.899481139150538 26.15076233474161 24.00829010252756 100-101 24.42229998641457 25.275595092102854 26.369917657689037 23.932187263793544 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 368.0 1 294.5 2 470.5 3 748.0 4 557.5 5 379.5 6 763.5 7 1654.0 8 2488.0 9 2542.0 10 1935.5 11 1464.0 12 1409.5 13 1526.0 14 1703.0 15 1888.0 16 2173.5 17 2478.5 18 2792.0 19 3121.5 20 3443.5 21 3959.5 22 4733.0 23 5752.5 24 6766.5 25 8330.5 26 10602.5 27 13306.5 28 16608.0 29 20659.0 30 25911.0 31 31595.5 32 37624.0 33 44368.5 34 51370.0 35 58973.0 36 68139.5 37 77948.0 38 87387.0 39 96470.5 40 106129.0 41 116398.5 42 126317.5 43 137738.0 44 150303.0 45 161978.5 46 169972.0 47 176261.0 48 184310.0 49 188784.0 50 187140.0 51 185093.0 52 184760.5 53 183381.0 54 181620.0 55 175327.0 56 163169.5 57 150777.5 58 139180.5 59 124838.5 60 107048.5 61 89648.5 62 73011.0 63 55664.0 64 40519.0 65 30341.5 66 23045.0 67 17634.0 68 13454.0 69 10156.0 70 7721.0 71 5858.5 72 4357.5 73 3300.5 74 2563.0 75 1811.0 76 1303.0 77 848.5 78 491.0 79 277.0 80 152.0 81 86.5 82 50.0 83 26.5 84 14.5 85 5.5 86 1.5 87 1.0 88 1.0 89 1.5 90 1.5 91 1.5 92 1.5 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.30822368975871345 2 0.0 3 0.006040026457595139 4 0.059465769916474405 5 5.926063694244288E-4 6 0.06258834963228775 7 0.07373390788800105 8 0.1037289072019452 9 0.09137534365471288 10-11 0.09479422655523843 12-13 0.09505634091094539 14-15 0.06329491876506303 16-17 0.034564906124313316 18-19 0.03769888211646174 20-21 0.027749932875932387 22-23 0.04143686075436968 24-25 0.03333410828012412 26-27 0.020957752180221625 28-29 0.024331049975406836 30-31 0.003111183439478251 32-33 0.005333457324819859 34-35 0.007726675355187744 36-37 0.011293709848069402 38-39 0.01701464056828216 40-41 0.02114009260158299 42-43 0.0035328456638764024 44-45 0.014119986379170524 46-47 0.024319653699071752 48-49 0.002678124938745015 50-51 0.006530066340003801 52-53 0.0025071807937187373 54-55 0.003931715335604383 56-57 0.0037151860852377653 58-59 0.0010142685938225801 60-61 0.005549986575186477 62-63 0.014473270945558165 64-65 0.00674659559037042 66-67 0.0389524725133211 68-69 0.06059400127364784 70-71 0.012023071533514854 72-73 0.031989347672584066 74-75 0.04991569034767304 76-77 0.2971123203320054 78-79 0.07168257814768571 80-81 0.03284406839771546 82-83 0.026895212150800995 84-85 0.018689893189539678 86-87 0.11782610102844557 88-89 0.5238298417421898 90-91 0.1296440395879289 92-93 0.0468728845662053 94-95 0.008775132778015579 96-97 0.005971648799584628 98-99 0.010940425281681761 100-101 0.007886223223878937 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4387398.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 51.93255716044353 #Duplication Level Percentage of deduplicated Percentage of total 1 70.38371778976746 36.55206447281624 2 16.061754110669234 16.682559268986378 3 5.837207637829255 9.094233579268359 4 2.608983027433917 5.419646408113556 5 1.3743931483520722 3.5687875368857966 6 0.8607473111809211 2.682048536316075 7 0.5543082028497412 2.0150649700297842 8 0.3928263387034967 1.6320381031077673 9 0.29471718411763914 1.3774875309318828 >10 1.5084380866557767 13.97169130874013 >50 0.0861097920194279 3.052156700328359 >100 0.03552385652179316 3.086125754197746 >500 9.221998644881415E-4 0.3118693943734063 >1k 2.634855260695966E-4 0.2528022402272491 >5k 8.78285086898647E-5 0.30142419567735945 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7968 0.18161105967591726 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5249 0.1196381089657241 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.3675531602102203E-4 2 0.0 0.0 0.0 1.3675531602102203E-4 1.3675531602102203E-4 3 0.0 0.0 0.0 1.3675531602102203E-4 1.3675531602102203E-4 4 0.0 0.0 0.0 1.5954786869119237E-4 1.3675531602102203E-4 5 0.0 2.2792552670170338E-5 0.0 1.823404213613627E-4 1.3675531602102203E-4 6 0.0 2.2792552670170338E-5 0.0 1.823404213613627E-4 2.2792552670170338E-4 7 0.0 2.2792552670170338E-5 0.0 2.2792552670170338E-4 2.2792552670170338E-4 8 0.0 4.5585105340340676E-5 0.0 2.2792552670170338E-4 2.2792552670170338E-4 9 0.0 4.5585105340340676E-5 0.0 3.4188829005255504E-4 2.2792552670170338E-4 10-11 0.0 4.5585105340340676E-5 0.0 3.646808427227254E-4 2.507180793718737E-4 12-13 0.0 4.5585105340340676E-5 0.0 3.874733953928957E-4 5.584175404191732E-4 14-15 0.0 5.6981381675425845E-5 0.0 3.874733953928957E-4 6.72380303770025E-4 16-17 0.0 6.837765801051101E-5 0.0 4.786436060735771E-4 7.293616854454508E-4 18-19 0.0 7.977393434559618E-5 0.0 6.153989220945991E-4 7.749467907857915E-4 20-21 0.0 1.0256648701576652E-4 0.0 6.381914747647695E-4 8.319281724612174E-4 22-23 0.0 1.1396276335085169E-4 0.0 6.609840274349398E-4 8.433244487963025E-4 24-25 0.0 1.2535903968593685E-4 0.0 7.293616854454508E-4 8.433244487963025E-4 26-27 0.0 1.3675531602102203E-4 0.0 7.977393434559618E-4 8.547207251313877E-4 28-29 0.0 1.3675531602102203E-4 0.0 0.001276382949529539 8.661170014664728E-4 30-31 0.0 1.3675531602102203E-4 0.0 0.002906050465446718 8.661170014664728E-4 32-33 0.0 1.3675531602102203E-4 0.0 0.0065414626163388875 9.117021068068135E-4 34-35 0.0 1.3675531602102203E-4 0.0 0.011476050269430764 9.800797648173245E-4 36-37 0.0 1.7094414502627752E-4 0.0 0.018336608623152038 9.800797648173245E-4 38-39 0.0 2.165292503666182E-4 0.0 0.0291972599704882 0.0010028723174874948 40-41 0.0 2.2792552670170338E-4 0.0 0.040525158647562856 0.0010142685938225801 42-43 0.0 2.2792552670170338E-4 0.0 0.050895770112490364 0.0010484574228278355 44-45 0.0 2.2792552670170338E-4 0.0 0.06274789750097895 0.001071249975498006 46-47 0.0 2.2792552670170338E-4 0.0 0.07418975894140445 0.0010940425281681762 48-49 0.0 2.2792552670170338E-4 0.0 0.08596211239554744 0.0011396276335085167 50-51 0.0 2.507180793718737E-4 0.0 0.09878292327251825 0.001208005291519028 52-53 0.0 2.507180793718737E-4 0.0 0.11070342831901733 0.001208005291519028 54-55 0.0 2.621143557069589E-4 0.0 0.12260114081284625 0.001219401567854113 56-57 0.0 2.7351063204204406E-4 0.0 0.13512564850510483 0.0012535903968593685 58-59 0.0 2.7351063204204406E-4 0.0 0.14889235031788772 0.001276382949529539 60-61 0.0 2.7351063204204406E-4 0.0 0.16224878618260755 0.001276382949529539 62-63 0.0 3.1909573738238473E-4 0.0 0.17521774865193446 0.0012991755021997092 64-65 0.0 3.1909573738238473E-4 0.0 0.18876792121435074 0.0012991755021997092 66-67 0.0 3.4188829005255504E-4 0.0 0.20273975600116514 0.0013333643312049646 68-69 0.0 3.4188829005255504E-4 0.0 0.21698510142002161 0.0013675531602102202 70-71 0.0 3.4188829005255504E-4 0.0 0.2314241835365745 0.0014017419892154758 72-73 1.1396276335085169E-5 3.4188829005255504E-4 0.0 0.24614817256150456 0.0015043084762312421 74-75 2.2792552670170338E-5 3.646808427227254E-4 0.0 0.2611228796658065 0.0015840824105768385 76-77 2.2792552670170338E-5 3.874733953928957E-4 0.0 0.27606339794110313 0.0015954786869119236 78-79 2.2792552670170338E-5 3.874733953928957E-4 0.0 0.2924398470346205 0.0015954786869119236 80-81 2.2792552670170338E-5 4.102659480630661E-4 0.0 0.3099103386563061 0.001606874963247009 82-83 2.2792552670170338E-5 4.102659480630661E-4 0.0 0.3258765218017604 0.0017322340029329456 84-85 2.2792552670170338E-5 4.330585007332364E-4 0.0 0.34308489906773904 0.0017322340029329456 86-87 2.2792552670170338E-5 4.330585007332364E-4 0.0 0.360874486426807 0.0017892153846083714 88-89 2.2792552670170338E-5 4.444547770683216E-4 0.0 0.37853871474618894 0.0018689893189539678 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 4250 0.0 47.515575 1 GTATCAA 8160 0.0 44.12561 1 TCAACGC 10610 0.0 34.024414 4 TATCAAC 10990 0.0 32.760395 2 CAACGCA 11030 0.0 32.713898 5 ATCAACG 11015 0.0 32.600166 3 GTACCTG 4625 0.0 32.02637 1 AACGCAG 11715 0.0 31.165798 6 TACCTGG 4880 0.0 29.783737 2 ACGCAGA 14055 0.0 25.775537 7 GTACATG 13200 0.0 25.653982 1 CGCAGAG 14790 0.0 24.430397 8 TACATGG 13525 0.0 23.8457 2 ACATGGG 13460 0.0 22.937752 3 GAGTACA 10280 0.0 22.47024 1 ACCTGGG 6550 0.0 21.682653 3 AGTACAT 9845 0.0 21.324759 2 GCAGAGT 16970 0.0 21.207598 9 GTGGTAT 2925 0.0 20.028034 1 AGAGTAC 14635 0.0 19.83823 10-11 >>END_MODULE