##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921419_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2763971 Sequences flagged as poor quality 0 Sequence length 101 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.346480480439194 33.0 31.0 34.0 28.0 34.0 2 31.473516545578807 34.0 31.0 34.0 28.0 34.0 3 31.54561824273844 34.0 31.0 34.0 28.0 34.0 4 35.035195376507204 37.0 35.0 37.0 32.0 37.0 5 34.77466876461439 37.0 35.0 37.0 32.0 37.0 6 34.72697434235019 37.0 35.0 37.0 32.0 37.0 7 34.59471282441096 37.0 35.0 37.0 32.0 37.0 8 34.553753639238614 37.0 35.0 37.0 32.0 37.0 9 36.168857053854765 39.0 37.0 39.0 32.0 39.0 10-11 36.01810547216306 39.0 37.0 39.0 31.0 39.0 12-13 35.94180999004693 39.0 37.0 39.0 31.0 39.0 14-15 37.17128381593005 40.0 38.0 41.0 31.0 41.0 16-17 37.14527467907587 40.0 38.0 41.0 31.0 41.0 18-19 37.11084649585686 40.0 38.0 41.0 31.0 41.0 20-21 37.06954414500007 40.0 38.0 41.0 31.0 41.0 22-23 36.96181544596524 40.0 37.5 41.0 30.5 41.0 24-25 36.88691614347618 40.0 37.0 41.0 30.0 41.0 26-27 36.74272667839134 40.0 37.0 41.0 30.0 41.0 28-29 36.58563982762482 40.0 37.0 41.0 30.0 41.0 30-31 36.43866433475605 40.0 37.0 41.0 30.0 41.0 32-33 36.37547969931667 40.0 36.5 41.0 30.0 41.0 34-35 36.495082437550906 40.0 37.0 41.0 30.0 41.0 36-37 36.464414243130626 40.0 37.0 41.0 30.0 41.0 38-39 36.368942908590576 40.0 37.0 41.0 29.5 41.0 40-41 36.232652947516456 40.0 36.0 41.0 29.0 41.0 42-43 36.112073172981916 40.0 36.0 41.0 28.5 41.0 44-45 35.95661929882766 40.0 36.0 41.0 28.0 41.0 46-47 35.78177538765783 40.0 35.0 41.0 27.0 41.0 48-49 35.60794632071031 40.0 35.0 41.0 26.5 41.0 50-51 35.44060429722309 39.5 35.0 41.0 26.0 41.0 52-53 35.25656347335048 39.0 35.0 41.0 26.0 41.0 54-55 35.03551846238618 39.0 35.0 41.0 26.0 41.0 56-57 34.764674991163076 39.0 35.0 41.0 25.0 41.0 58-59 34.52739916591021 38.0 34.5 40.0 24.0 41.0 60-61 34.242356196935496 38.0 34.0 40.0 23.5 41.0 62-63 33.93397940861174 37.0 34.0 40.0 23.0 41.0 64-65 33.61468210049961 37.0 34.0 40.0 22.5 41.0 66-67 33.27919594670132 36.0 34.0 39.0 22.0 41.0 68-69 32.9171263012528 35.5 33.0 39.0 21.5 40.5 70-71 32.54023341778911 35.0 33.0 38.5 20.0 40.0 72-73 32.1544811794335 35.0 33.0 37.0 18.5 39.5 74-75 31.761563706710383 35.0 32.5 37.0 17.5 39.0 76-77 29.04608206815484 33.0 28.5 34.5 9.0 36.5 78-79 30.699541710097538 34.5 31.5 35.5 11.5 37.0 80-81 30.906951990451418 35.0 32.0 35.0 11.5 37.0 82-83 30.753847996234406 35.0 32.0 35.0 8.5 37.0 84-85 30.53503256727368 35.0 32.0 35.0 7.0 36.0 86-87 30.304998858526375 35.0 32.0 35.0 2.0 36.0 88-89 30.033354004076017 35.0 31.0 35.0 2.0 36.0 90-91 29.85493425944049 34.0 31.0 35.0 2.0 35.0 92-93 29.71267969164655 34.0 31.0 35.0 2.0 35.0 94-95 29.619476289729526 34.0 31.0 35.0 2.0 35.0 96-97 29.430845692664647 34.0 31.0 35.0 2.0 35.0 98-99 29.16670145960287 34.0 31.0 35.0 2.0 35.0 100-101 28.09191214379601 33.0 28.5 34.5 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 56209.0 3 18419.0 4 10045.0 5 7057.0 6 6296.0 7 6265.0 8 6570.0 9 7054.0 10 7675.0 11 8322.0 12 8849.0 13 9833.0 14 10516.0 15 11885.0 16 13064.0 17 14588.0 18 13244.0 19 11183.0 20 10580.0 21 10198.0 22 11052.0 23 12140.0 24 14027.0 25 17010.0 26 20524.0 27 24707.0 28 29491.0 29 35781.0 30 43453.0 31 53437.0 32 68420.0 33 91215.0 34 133622.0 35 199433.0 36 348706.0 37 666170.0 38 662790.0 39 84136.0 40 5.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.512686827562995 19.19497969259712 13.386218214086298 25.90611526575359 2 15.224034281347867 20.730569850706523 37.64866394206556 26.396731925880047 3 18.109210297320306 24.60073804529799 29.054301217857958 28.235750439523738 4 13.311228877720078 16.494436920712328 34.83072688177023 35.36360731979737 5 14.217144519816213 37.535791939177585 33.79204195727261 14.455021583733597 6 33.98421529829497 34.93977080561025 16.651290077722326 14.424723818372456 7 29.259073000068742 32.01333589004222 20.423050901420783 18.304540208468254 8 27.345315086335553 34.790741427498936 19.289126875729263 18.574816610436244 9 27.2975367686564 15.495459250476939 18.916117426702378 38.29088655416428 10-11 26.153819408667157 25.223719591619503 27.09286493089805 21.52959606881529 12-13 26.580178674315093 22.52381766428151 27.291782555330336 23.604221106073066 14-15 23.721427268885428 24.061969937304255 24.47959783256821 27.737004961242107 16-17 23.901990129041 27.257331085597457 25.306891382366608 23.533787402994935 18-19 23.918323783336422 26.524744818354083 26.72718967786285 22.82974172044664 20-21 24.35226365141948 25.52147694289247 26.90925404832391 23.217005357364137 22-23 24.28951730954722 25.228602667326587 26.631224841405434 23.85065518172076 24-25 24.043317368120565 25.56195426360908 26.485965977381447 23.908762390888903 26-27 23.663561748908695 25.881609105989916 26.564413626422134 23.890415518679255 28-29 23.817877559881325 26.227078659816193 26.291844561835156 23.663199218467327 30-31 24.287067866395255 25.744331741973557 26.177883349776437 23.790717041854748 32-33 23.98109766897907 25.810630399144298 26.063997912848013 24.144274019028618 34-35 24.228620597448376 25.95463323362231 26.23788152854211 23.5788646403872 36-37 24.258792435832383 25.788974304008484 26.319138986650458 23.633094273508682 38-39 24.207967825942866 25.863125667971314 26.194207888230174 23.734698617855646 40-41 24.25405772012925 25.699258982939117 26.2044806196025 23.84220267732914 42-43 24.04129582708797 25.730180454406064 25.95220025201563 24.276323466490336 44-45 23.928724042844888 25.757696915444562 26.23042641177507 24.083152629935483 46-47 24.171159719666782 25.77729726443901 25.886516354278722 24.16502666161549 48-49 23.930711447862617 26.00265589833771 25.930288096220227 24.13634455757944 50-51 24.108323125554147 25.93441657906158 26.00790173468023 23.94935856070404 52-53 24.385440296968447 25.72141841508287 25.884067252064995 24.00907403588369 54-55 23.604814499578048 25.684181201309364 26.30279030768549 24.4082139914271 56-57 23.828887225319605 25.879286620645537 25.92755344718853 24.364272706846325 58-59 23.93408717481676 25.807654997212083 26.0191098128567 24.23914801511446 60-61 23.993525477647086 25.85517679563608 26.185271058660746 23.96602666805608 62-63 23.950523645797126 25.809695557546213 26.221045598066052 24.01873519859061 64-65 23.60372254997605 25.64089339896493 26.24116516892789 24.514218882131132 66-67 23.648593747031 25.862441196882653 26.017077900162057 24.47188715592429 68-69 23.754328994341524 25.760264504969694 26.094623280005656 24.390783220683122 70-71 23.710571721128275 25.589874596112033 26.003218435569575 24.696335247190113 72-73 23.60767284742879 25.9937619979846 25.78331945160446 24.61524570298215 74-75 23.564211822646726 26.080764255466676 25.842386785629824 24.51263713625677 76-77 23.58209680531157 25.57408070929249 25.985184873571686 24.85863761182425 78-79 23.454372231586163 25.682770570732462 26.043514048413268 24.819343149268114 80-81 23.77884504872855 25.956928467808567 25.645272077169302 24.618954406293582 82-83 23.67062506966046 25.901967283828203 25.823495225453826 24.603912421057508 84-85 23.54207774234223 26.00532884365106 25.698840712307586 24.75375270169912 86-87 23.384015721588128 26.267942280553587 25.552342080322397 24.795699917535888 88-89 23.23647960289493 25.982410819401025 25.708555885432542 25.072553692271505 90-91 23.28268226255564 25.790598042432357 25.825186479949597 25.10153321506241 92-93 23.445733990019395 25.70351464114057 25.86233483604688 24.98841653279316 94-95 23.315194846568808 25.701323363587864 25.87009288022032 25.11338890962301 96-97 23.107749989687715 25.48813291196493 25.98567352246667 25.41844357588069 98-99 22.827780544559282 25.586395370524308 25.866520691555884 25.719303393360534 100-101 22.859975780853993 25.6582929590449 25.915589727521944 25.566141532579167 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 86.0 1 71.5 2 81.0 3 118.5 4 117.0 5 134.0 6 233.0 7 457.5 8 699.5 9 782.5 10 661.5 11 521.5 12 487.5 13 503.5 14 602.5 15 692.5 16 715.0 17 806.5 18 926.5 19 1042.5 20 1204.5 21 1360.5 22 1560.0 23 1893.5 24 2372.5 25 2989.0 26 3995.5 27 5543.5 28 7699.5 29 10860.0 30 14925.5 31 20080.5 32 27599.0 33 32137.5 34 33930.5 35 38449.0 36 45469.0 37 52300.5 38 58497.0 39 64782.0 40 69910.0 41 74664.5 42 79813.0 43 85889.5 44 92223.5 45 99631.5 46 106000.5 47 111196.5 48 116533.0 49 119882.5 50 120908.5 51 121385.0 52 121472.0 53 121432.0 54 120371.0 55 114755.0 56 106380.5 57 96665.0 58 87143.0 59 76259.5 60 62915.5 61 52162.0 62 43506.5 63 33483.0 64 23821.5 65 17177.5 66 12834.5 67 9802.0 68 7531.0 69 5752.0 70 4300.5 71 3105.5 72 2197.0 73 1651.5 74 1263.5 75 925.0 76 665.0 77 408.0 78 230.5 79 145.0 80 90.5 81 51.0 82 24.5 83 13.5 84 13.5 85 9.5 86 8.5 87 6.0 88 3.0 89 3.5 90 2.5 91 1.0 92 1.5 93 1.0 94 1.0 95 1.0 96 0.5 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.14978449484455517 2 6.874167637793595E-4 3 0.006657088659758008 4 0.004486298879402136 5 0.028184087314953737 6 0.0010492150605053382 7 3.617982967259787E-5 8 0.001664272164939502 9 0.0 10-11 0.10381802124551959 12-13 1.2662940385409254E-4 14-15 0.005318434961871887 16-17 1.628092335266904E-4 18-19 3.075285522170819E-4 20-21 6.693268489430605E-4 22-23 1.8089914836298934E-4 24-25 0.0016280923352669041 26-27 0.002749667055117438 28-29 0.006186750874014235 30-31 0.014526201613548043 32-33 0.014345302465185053 34-35 0.011505185835886122 36-37 6.693268489430605E-4 38-39 1.8089914836298934E-4 40-41 0.004866187090964413 42-43 0.00917158682200356 44-45 0.008466080143387901 46-47 0.009406755714875445 48-49 0.011251927028177936 50-51 0.005336524876708186 52-53 0.0014833730165765126 54-55 0.0010311251456690393 56-57 0.006078211384996442 58-59 0.009406755714875445 60-61 0.0077786633796085415 62-63 0.018433623218188613 64-65 0.03518488435660143 66-67 0.03775365226335588 68-69 0.027912738592409253 70-71 0.04117264616741637 72-73 0.02700824285059431 74-75 0.025561049663690393 76-77 0.2358563096356655 78-79 0.06865122680375445 80-81 0.05331097902257296 82-83 0.020513963424362992 84-85 0.03238094755697509 86-87 0.0782750614966655 88-89 0.2612002803213203 90-91 0.3153072155966904 92-93 0.051122099327380786 94-95 0.005155625728345196 96-97 0.01002181281930961 98-99 0.0010673049753416371 100-101 0.0015195528462491105 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 2763971.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 54.75289987855756 #Duplication Level Percentage of deduplicated Percentage of total 1 76.56479861873069 41.921447529932834 2 12.306156574083232 13.475955175812643 3 4.258366406234843 6.99473728460368 4 2.0375666859884225 4.462507390152337 5 1.139482581475847 3.119498784845368 6 0.739613994930713 2.4297606607932782 7 0.5207696026954786 1.9959552141327213 8 0.372426260389351 1.6313134197794996 9 0.30960748331393234 1.5256716781985926 >10 1.6499441765530267 15.97756056468283 >50 0.07440728275652052 2.753071336441057 >100 0.02440400489173638 2.3060714183801907 >500 0.0013277448412244586 0.5218253851858954 >1k 0.0011285831149759605 0.8846241570591514 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 3.617982967259787E-5 10-11 0.0 0.0 0.0 7.235965934519574E-5 3.617982967259787E-5 12-13 0.0 0.0 0.0 1.085394890177936E-4 3.617982967259787E-5 14-15 0.0 0.0 0.0 1.085394890177936E-4 3.617982967259787E-5 16-17 0.0 0.0 0.0 1.085394890177936E-4 3.617982967259787E-5 18-19 0.0 0.0 0.0 1.085394890177936E-4 7.235965934519574E-5 20-21 0.0 0.0 0.0 1.2662940385409254E-4 1.4471931869039148E-4 22-23 0.0 0.0 0.0 2.3516889287188614E-4 2.1707897803558722E-4 24-25 0.0 0.0 0.0 5.065176154163702E-4 2.8943863738078296E-4 26-27 0.0 0.0 0.0 0.0010673049753416371 2.8943863738078296E-4 28-29 0.0 0.0 0.0 0.003744612371113879 2.8943863738078296E-4 30-31 0.0 0.0 0.0 0.013657885701405695 3.075285522170819E-4 32-33 0.0 0.0 0.0 0.03590848095005338 3.256184670533808E-4 34-35 0.0 0.0 0.0 0.06427346741337012 3.9797812639857656E-4 36-37 0.0 0.0 0.0 0.1085394890177936 3.9797812639857656E-4 38-39 0.0 0.0 0.0 0.1764671192280961 4.1606804123487545E-4 40-41 0.0 0.0 0.0 0.25385577489778294 4.7033778574377227E-4 42-43 0.0 0.0 0.0 0.33544129080949114 4.884277005800712E-4 44-45 0.0 0.0 0.0 0.43650964499989325 5.246075302526691E-4 46-47 0.0 0.0 0.0 0.5550347670073239 6.150571044341638E-4 48-49 0.0 0.0 0.0 0.6738674175669715 6.874167637793595E-4 50-51 0.0 0.0 0.0 0.8006777205694271 7.235965934519574E-4 52-53 0.0 0.0 0.0 0.9321371316848115 8.14046167633452E-4 54-55 0.0 0.0 0.0 1.0887053445929786 9.044957418149467E-4 56-57 0.0 0.0 0.0 1.2633996521671176 9.044957418149467E-4 58-59 0.0 0.0 0.0 1.4493277968545981 9.044957418149467E-4 60-61 0.0 0.0 0.0 1.6521338320843455 9.044957418149467E-4 62-63 0.0 0.0 0.0 1.8659566254493987 9.044957418149467E-4 64-65 0.0 0.0 0.0 2.096675399271555 9.044957418149467E-4 66-67 3.617982967259787E-5 0.0 0.0 2.3706471594673024 9.225856566512456E-4 68-69 3.617982967259787E-5 0.0 0.0 2.6639389487082172 9.406755714875445E-4 70-71 3.617982967259787E-5 0.0 0.0 2.970327836290612 9.949453159964414E-4 72-73 3.617982967259787E-5 0.0 0.0 3.296669899937445 0.0011939343791957295 74-75 3.617982967259787E-5 0.0 0.0 3.64636604363794 0.0011939343791957295 76-77 3.617982967259787E-5 0.0 0.0 4.041196524855 0.0011939343791957295 78-79 3.617982967259787E-5 0.0 0.0 4.479207632786307 0.0011939343791957295 80-81 3.617982967259787E-5 0.0 0.0 4.933427304410936 0.0012301142088683274 82-83 3.617982967259787E-5 0.0 0.0 5.404090708621762 0.0012843839533772242 84-85 3.617982967259787E-5 0.0 0.0 5.904964270609207 0.0013024738682135232 86-87 3.617982967259787E-5 0.0 0.0 6.438526308705844 0.001338653697886121 88-89 3.617982967259787E-5 0.0 0.0 7.0141835786265485 0.001374833527558719 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 2755 0.0 57.104088 1 GTATCAA 5130 0.0 45.120342 1 TCAACGC 6870 0.0 33.43706 4 ATCAACG 7035 0.0 32.78775 3 TATCAAC 7015 0.0 32.61119 2 CAACGCA 7100 0.0 32.275684 5 AACGCAG 7545 0.0 30.306322 6 GTACATG 9800 0.0 26.04408 1 TACATGG 10015 0.0 25.022476 2 ACGCAGA 9215 0.0 24.401316 7 ACATGGG 10535 0.0 23.291393 3 CGCAGAG 9520 0.0 23.070255 8 TATACCG 210 3.4176992E-8 22.639534 5 CATGGGG 8755 0.0 20.437351 4 GCAGAGT 10285 0.0 20.291195 9 GTATATA 750 0.0 20.279139 1 AGAGTAC 8855 0.0 18.924217 10-11 ATGGGGG 5685 0.0 18.565613 5 GTGGTAT 1425 0.0 18.011078 1 GAGTACA 7670 0.0 17.8467 1 >>END_MODULE