##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921417_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3064764 Sequences flagged as poor quality 0 Sequence length 101 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.36964118607501 31.0 31.0 34.0 26.0 34.0 2 30.411406881573917 31.0 31.0 34.0 26.0 34.0 3 30.464042255782175 33.0 31.0 34.0 26.0 34.0 4 33.92231832532619 37.0 35.0 37.0 30.0 37.0 5 33.916071514805054 37.0 35.0 37.0 30.0 37.0 6 33.96175039905194 37.0 35.0 37.0 30.0 37.0 7 33.87670372009068 37.0 35.0 37.0 29.0 37.0 8 33.844244124506815 37.0 35.0 37.0 29.0 37.0 9 35.40012412048693 39.0 37.0 39.0 30.0 39.0 10-11 35.28989654668353 39.0 35.0 39.0 29.0 39.0 12-13 35.17167276175262 39.0 35.0 39.0 28.0 39.0 14-15 36.29690393779097 40.0 37.0 41.0 28.0 41.0 16-17 36.24233317801958 40.0 36.5 41.0 27.0 41.0 18-19 36.18974886810208 40.0 36.5 41.0 27.0 41.0 20-21 36.124440739972144 40.0 36.5 41.0 27.0 41.0 22-23 36.00754299515395 40.0 36.0 41.0 27.0 41.0 24-25 35.908096186199 40.0 36.0 41.0 27.0 41.0 26-27 35.75381791224382 40.0 36.0 41.0 27.0 41.0 28-29 35.61251437304797 40.0 36.0 41.0 26.0 41.0 30-31 35.46509927028639 40.0 35.5 41.0 25.0 41.0 32-33 35.27748906604228 39.0 35.0 41.0 25.0 41.0 34-35 35.11158053279143 39.0 35.0 41.0 24.0 41.0 36-37 34.94048367182596 39.0 35.0 41.0 24.0 41.0 38-39 35.17129752894513 39.0 35.0 41.0 24.5 41.0 40-41 35.28841812942204 40.0 35.0 41.0 24.5 41.0 42-43 35.12294160333389 40.0 35.0 41.0 24.0 41.0 44-45 35.00064605300767 40.0 35.0 41.0 23.0 41.0 46-47 34.8414848582142 39.5 35.0 41.0 22.5 41.0 48-49 34.68800844045414 39.0 35.0 41.0 21.5 41.0 50-51 32.96605464564318 37.0 32.5 39.5 17.0 40.0 52-53 33.119219457028336 37.5 32.5 39.5 16.5 40.0 54-55 33.97990970919784 38.5 34.0 40.5 17.5 41.0 56-57 33.99210493858581 38.5 34.0 41.0 17.0 41.0 58-59 33.81248050420848 38.0 34.0 41.0 15.5 41.0 60-61 33.5695802352155 38.0 34.0 40.0 13.5 41.0 62-63 33.277442406658395 37.0 33.0 40.0 11.5 41.0 64-65 32.98915756645536 37.0 33.0 40.0 8.0 41.0 66-67 32.64806131891395 36.0 33.0 39.0 7.0 41.0 68-69 32.28544139124578 36.0 33.0 39.0 3.5 41.0 70-71 31.90647925908814 35.0 32.0 39.0 2.0 40.5 72-73 31.547274765691583 35.0 32.0 37.5 2.0 40.0 74-75 31.149949066225002 35.0 32.0 37.0 2.0 39.0 76-77 30.776651318013393 35.0 31.5 36.5 2.0 39.0 78-79 30.429534378503533 35.0 31.0 36.0 2.0 38.5 80-81 30.077313620233078 35.0 31.0 36.0 2.0 37.0 82-83 29.777158208592894 35.0 31.0 35.0 2.0 37.0 84-85 29.540752077484598 35.0 31.0 35.0 2.0 36.5 86-87 29.31074366574392 35.0 30.5 35.0 2.0 36.0 88-89 29.107089648664626 35.0 30.0 35.0 2.0 36.0 90-91 28.850770728186575 34.0 30.0 35.0 2.0 35.5 92-93 28.647377253191436 34.0 30.0 35.0 2.0 35.0 94-95 28.433591297731244 34.0 30.0 35.0 2.0 35.0 96-97 28.167234736508263 34.0 29.0 35.0 2.0 35.0 98-99 27.930681122592148 34.0 29.0 35.0 2.0 35.0 100-101 26.871879531344014 33.0 26.5 35.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 107905.0 3 18424.0 4 12857.0 5 9879.0 6 8672.0 7 9020.0 8 9621.0 9 10311.0 10 11202.0 11 11827.0 12 12000.0 13 11998.0 14 12952.0 15 13702.0 16 14082.0 17 14906.0 18 13909.0 19 12959.0 20 13046.0 21 13862.0 22 15239.0 23 16931.0 24 20256.0 25 23661.0 26 28232.0 27 33222.0 28 39100.0 29 46479.0 30 55320.0 31 67323.0 32 83992.0 33 108376.0 34 153797.0 35 221407.0 36 363869.0 37 645161.0 38 677526.0 39 121724.0 40 15.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.32151384511724 17.880509759908282 12.594744268008512 25.20323212696597 2 16.18008055482733 19.54468272517823 39.03043643060561 25.244800289388824 3 19.55747985896131 23.390536853881454 29.121563765292873 27.93041952186436 4 13.604445220718464 15.192135981443425 36.17915388671151 35.0242649111266 5 14.436205340310545 37.13812369320064 33.967071512630966 14.458599453857843 6 33.965114480349484 34.523173141126186 17.03877104386994 14.472941334654399 7 29.50222154054006 31.646844400787778 20.524358625010812 18.326575433661358 8 27.067534212911305 34.47409550732494 19.798206402423403 18.660163877340352 9 27.381330802524456 15.456906516941645 19.039582834275315 38.12217984625858 10-11 26.117291360292317 24.95483120119632 27.4390335443604 21.488843894150968 12-13 26.45301654515018 22.376391151332655 27.294194135027723 23.87639816848944 14-15 23.676635942045355 23.9589860336349 24.60318950001722 27.761188524302526 16-17 23.905659287343198 27.04187992092253 25.47199894511153 23.58046184662274 18-19 23.92650130548303 26.564050261096604 26.649543080939946 22.859905352480418 20-21 24.4250410221638 25.67136412259895 26.67454879699598 23.229046058241273 22-23 24.29599499884928 25.443125784490228 26.308354239470898 23.952524977189597 24-25 24.003390961396967 25.586040912203874 26.427481150263198 23.98308697613596 26-27 23.792019035247193 25.88129408347178 26.407619321167573 23.919067560113454 28-29 23.854771530324605 26.203295380837183 26.212188584879105 23.729744503959108 30-31 24.35200189012876 25.79392668865399 26.071066165438804 23.783005255778445 32-33 23.986415102959523 25.826609005093115 26.050712489180295 24.13626340276707 34-35 24.2999100489795 25.928132838387892 26.13877453522995 23.633182577402664 36-37 24.285202469137413 25.81346905453494 26.179343325347816 23.72198515097983 38-39 24.140438580962737 25.963647102299937 26.14569711465904 23.75021720207829 40-41 24.315843966333983 25.755836709348767 26.116157119603372 23.812162204713875 42-43 24.090500356416477 25.72097494621054 25.972117767851888 24.216406929521096 44-45 23.94032176179506 25.813942008603547 26.18619136958147 24.059544860019923 46-47 24.06050569400643 25.711143945482956 26.00477346163258 24.223576898878036 48-49 23.896258652127468 25.89694027917286 26.042631930385774 24.164169138313895 50-51 24.049584507366866 25.925471877299643 26.06411653343245 23.960827081901037 52-53 24.202092053834154 25.732644667479303 26.08237737818652 23.982885900500023 54-55 23.639754434194828 25.60858973585673 26.427730883232993 24.32392494671545 56-57 23.824447157115127 25.726351906408613 26.174580139555953 24.274620796920306 58-59 23.9076026435676 25.665174913702177 26.306874988965518 24.120347453764705 60-61 24.05842657981717 25.696336502781946 26.368665911823257 23.876571005577624 62-63 23.962944247826528 25.628321350166495 26.403727415799732 24.00500698620725 64-65 23.731385446562918 25.461141986873276 26.386107018683052 24.421365547880754 66-67 23.7361048359519 25.626831193168037 26.205326405993468 24.4317375648866 68-69 23.79008905527783 25.61255028678444 26.305413130933538 24.291947527004194 70-71 23.750943639221987 25.395274310344572 26.336780691135342 24.517001359298103 72-73 23.742922708788264 25.67989395504531 26.118653320606196 24.458530015560235 74-75 23.677561649173413 25.727341910192724 26.21721077289803 24.377885667735832 76-77 23.67048896899826 25.352900200088197 26.309734302098853 24.666876528814694 78-79 23.67630984288 25.40061464253916 26.36462708972087 24.558448424859964 80-81 23.892780314684735 25.537130938352913 26.07792839714768 24.49216034981466 82-83 23.870075156106534 25.560891357178544 26.1905984236314 24.37843506308352 84-85 23.801492674691836 25.60654316702664 26.134542792966958 24.457421365314563 86-87 23.6516386627242 25.73028080358727 26.112302140074927 24.505778393613607 88-89 23.62218165996016 25.42140304112317 26.27744554549021 24.678969753426465 90-91 23.798809183940758 25.262214007442356 26.315730093466012 24.623246715150874 92-93 23.927196461695843 25.11497068419249 26.387677026401235 24.570155827710437 94-95 23.83489171719319 25.117342829458156 26.413482098687197 24.634283354661456 96-97 23.786587897711783 24.912780728470008 26.46340551985597 24.837225853962238 98-99 23.57141478886206 24.87501197798471 26.452982689890714 25.10059054326252 100-101 23.876166353545766 24.86477036637762 26.490535070412953 24.76852820966366 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 59.0 1 55.0 2 93.0 3 153.0 4 146.5 5 162.0 6 261.0 7 436.5 8 664.5 9 768.5 10 675.5 11 618.5 12 656.5 13 687.5 14 772.0 15 859.5 16 967.5 17 1132.0 18 1243.0 19 1363.0 20 1509.0 21 1639.5 22 1809.5 23 2038.5 24 2373.0 25 2827.5 26 3520.5 27 4642.5 28 6487.5 29 9253.5 30 12934.5 31 18093.0 32 25458.0 33 31663.0 34 37001.0 35 44127.5 36 52967.5 37 61915.0 38 69903.0 39 77304.0 40 83214.5 41 88917.0 42 94337.5 43 100310.5 44 107427.0 45 114994.5 46 121093.0 47 125364.5 48 130243.5 49 133979.5 50 134441.5 51 133418.5 52 131601.0 53 129926.5 54 127564.5 55 121750.0 56 112651.5 57 101029.5 58 90532.0 59 79543.5 60 66902.5 61 55969.5 62 46260.5 63 36291.0 64 27062.0 65 20395.5 66 15637.5 67 12025.5 68 9278.5 69 7352.0 70 5948.0 71 4606.0 72 3495.0 73 2816.5 74 2316.5 75 1883.0 76 1416.5 77 943.5 78 624.5 79 451.0 80 322.0 81 239.5 82 183.5 83 129.5 84 108.5 85 93.5 86 69.5 87 65.0 88 54.0 89 41.5 90 36.0 91 31.5 92 29.5 93 28.0 94 24.0 95 23.0 96 20.5 97 14.0 98 10.5 99 8.0 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.049530730588064856 2 0.05732904719580366 3 0.04864974921396884 4 0.055436568688486294 5 0.047605623140966155 6 0.018598495675360323 7 0.014650393961818919 8 0.020980408279397695 9 0.021469842376117702 10-11 0.022905515726496396 12-13 0.027571454115227143 14-15 0.04465270409075544 16-17 0.03044280081598453 18-19 0.024928509992939097 20-21 0.02843612101943249 22-23 0.04793191253877949 24-25 0.04326597415004875 26-27 0.03178058734701922 28-29 0.020442030773005687 30-31 0.013785727057613571 32-33 0.010816493537512187 34-35 0.010392317320354847 36-37 0.0016314469890666948 38-39 0.007227310161565459 40-41 0.004258076641464074 42-43 0.21352378192904903 44-45 0.18901944815326727 46-47 0.19503948754292338 48-49 0.19272283281844865 50-51 0.19136873181752329 52-53 0.19575732421811273 54-55 0.19415850616882738 56-57 0.20482816947732355 58-59 0.20132055845083013 60-61 0.20533391804393422 62-63 0.2035230118860702 64-65 0.20458345242896353 66-67 0.19466425473543802 68-69 0.1936038141925447 70-71 0.17830084143509908 72-73 0.18546289371710187 74-75 0.18533237795797652 76-77 0.18314623899262716 78-79 0.20885784354031828 80-81 0.21820603478767045 82-83 0.21522048679767838 84-85 0.20975513938430498 86-87 0.22678744595016126 88-89 0.2255801751782519 90-91 0.22386715583973185 92-93 0.22931618878321464 94-95 0.2406873742970095 96-97 0.24091577687547885 98-99 0.230719233193812 100-101 0.2405405440679935 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 3064764.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 60.859980283222455 #Duplication Level Percentage of deduplicated Percentage of total 1 79.47462322651504 48.36824002582239 2 11.591500828528151 14.109170237543603 3 3.618035374463254 6.605806846615052 4 1.6171571218391596 3.936806022000161 5 0.9217515495338299 2.804889056532932 6 0.5837654827168137 2.131677346090268 7 0.39246719399144225 1.6719881981691573 8 0.28367671920086596 1.3811647629899149 9 0.22528599704769833 1.233981120456813 >10 1.216185012654925 13.084978957295698 >50 0.05880964841119647 2.413499515008445 >100 0.015612207720838437 1.6343362696368435 >500 8.606760966901986E-4 0.4079476748729435 >1k 2.689612800177389E-4 0.21551396696579397 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 3.2628939781333896E-5 7 0.0 3.2628939781333896E-5 0.0 0.0 3.2628939781333896E-5 8 0.0 3.2628939781333896E-5 0.0 0.0 3.2628939781333896E-5 9 0.0 3.2628939781333896E-5 0.0 0.0 9.78868193440017E-5 10-11 0.0 3.2628939781333896E-5 0.0 0.0 1.1420128923466863E-4 12-13 0.0 3.2628939781333896E-5 0.0 0.0 1.957736386880034E-4 14-15 0.0 3.2628939781333896E-5 0.0 0.0 2.773459881413381E-4 16-17 0.0 3.2628939781333896E-5 0.0 1.6314469890666948E-5 2.9366045803200507E-4 18-19 0.0 6.525787956266779E-5 0.0 3.2628939781333896E-5 3.2628939781333897E-4 20-21 0.0 6.525787956266779E-5 0.0 9.78868193440017E-5 3.589183375946729E-4 22-23 0.0 6.525787956266779E-5 0.0 2.1208810857867034E-4 3.7523280748533985E-4 24-25 0.0 6.525787956266779E-5 0.0 4.568051569386746E-4 3.915472773760068E-4 26-27 0.0 6.525787956266779E-5 0.0 0.0010604405428933515 4.731196268293415E-4 28-29 0.0 6.525787956266779E-5 0.0 0.004209133231792073 4.894340967200085E-4 30-31 0.0 6.525787956266779E-5 0.0 0.01709756444541896 4.894340967200085E-4 32-33 0.0 6.525787956266779E-5 0.0 0.04528896841649145 4.894340967200085E-4 34-35 0.0 6.525787956266779E-5 0.0 0.0830243372736041 5.546919762826763E-4 36-37 0.0 6.525787956266779E-5 0.0 0.1406796738672211 5.710064461733433E-4 38-39 0.0 6.525787956266779E-5 0.0 0.23284011427959866 6.199498558453441E-4 40-41 0.0 6.525787956266779E-5 0.0 0.33726903604975783 6.199498558453441E-4 42-43 0.0 6.525787956266779E-5 0.0 0.44752222357088506 6.199498558453441E-4 44-45 0.0 6.525787956266779E-5 0.0 0.5848411166406288 6.36264325736011E-4 46-47 0.0 6.525787956266779E-5 0.0 0.7374140390581461 6.688932655173449E-4 48-49 0.0 6.525787956266779E-5 0.0 0.8929072515860927 7.830945547520136E-4 50-51 0.0 8.157234945333474E-5 0.0 1.0588906682537382 7.830945547520136E-4 52-53 0.0 9.78868193440017E-5 0.0 1.235152200952504 8.157234945333474E-4 54-55 0.0 1.6314469890666949E-4 0.0 1.441677075298457 8.809813740960152E-4 56-57 0.0 1.957736386880034E-4 0.0 1.6746313908672903 8.809813740960152E-4 58-59 0.0 1.957736386880034E-4 0.0 1.9131652551387317 8.809813740960152E-4 60-61 0.0 1.957736386880034E-4 0.0 2.171309112218755 9.136103138773492E-4 62-63 0.0 1.957736386880034E-4 0.0 2.44441333818852 9.136103138773492E-4 64-65 0.0 1.957736386880034E-4 0.0 2.7368012675690525 9.136103138773492E-4 66-67 0.0 1.957736386880034E-4 0.0 3.075571234848752 9.136103138773492E-4 68-69 0.0 1.957736386880034E-4 0.0 3.443788820281105 9.136103138773492E-4 70-71 0.0 2.4471704836000424E-4 0.0 3.8253679565539143 9.136103138773492E-4 72-73 0.0 2.9366045803200507E-4 0.0 4.222086920885262 9.78868193440017E-4 74-75 0.0 2.9366045803200507E-4 0.0 4.640047325014258 9.78868193440017E-4 76-77 0.0 2.9366045803200507E-4 0.0 5.112775404566225 9.78868193440017E-4 78-79 0.0 2.9366045803200507E-4 0.0 5.634316378031066 9.78868193440017E-4 80-81 0.0 3.2628939781333897E-4 0.0 6.175238941726018 9.78868193440017E-4 82-83 0.0 3.2628939781333897E-4 0.0 6.736440391495071 9.951826633306838E-4 84-85 0.0 3.2628939781333897E-4 0.0 7.323908137788097 0.0010114971332213507 86-87 0.0 3.2628939781333897E-4 0.0 7.957741607510398 0.0010441260730026847 88-89 0.0 3.2628939781333897E-4 0.0 8.642035732604533 0.0010767550127840186 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 2260 0.0 52.90952 1 GTATCAA 4535 0.0 42.689846 1 TCAACGC 5490 0.0 34.489895 4 CAACGCA 5705 0.0 33.022118 5 ATCAACG 5775 0.0 32.785656 3 TATCAAC 5995 0.0 31.741856 2 GTACATG 10025 0.0 30.576647 1 AACGCAG 6160 0.0 30.5745 6 TACATGG 10120 0.0 29.35425 2 ACATGGG 10795 0.0 27.298067 3 CATGGGG 8785 0.0 24.956953 4 ACGCAGA 7395 0.0 24.895103 7 CGCAGAG 7625 0.0 23.460438 8 ATGGGGG 5575 0.0 21.875517 5 GAGTACA 7405 0.0 19.800453 1 GCAGAGT 8775 0.0 19.358763 9 AGTACAT 7540 0.0 18.251719 2 AGAGTAC 7515 0.0 18.216827 10-11 TATCTCG 370 2.7866918E-9 16.67292 5 GTGGTAT 1420 0.0 16.373798 1 >>END_MODULE