##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921417_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3064764 Sequences flagged as poor quality 0 Sequence length 101 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.33101537345127 33.0 31.0 34.0 28.0 34.0 2 31.4565924162513 34.0 31.0 34.0 28.0 34.0 3 31.534711645007576 34.0 31.0 34.0 28.0 34.0 4 35.02516474351695 37.0 35.0 37.0 32.0 37.0 5 34.75602982807159 37.0 35.0 37.0 32.0 37.0 6 34.70742543308392 37.0 35.0 37.0 32.0 37.0 7 34.570464479483576 37.0 35.0 37.0 32.0 37.0 8 34.530058758194755 37.0 35.0 37.0 31.0 37.0 9 36.1415035545967 39.0 37.0 39.0 32.0 39.0 10-11 35.98988095005031 39.0 37.0 39.0 31.0 39.0 12-13 35.9175425905551 39.0 37.0 39.0 31.0 39.0 14-15 37.14313255441529 40.0 38.0 41.0 31.0 41.0 16-17 37.115084880923945 40.0 38.0 41.0 31.0 41.0 18-19 37.07941622911258 40.0 38.0 41.0 31.0 41.0 20-21 37.03766015915092 40.0 38.0 41.0 31.0 41.0 22-23 36.92298069280375 40.0 37.0 41.0 30.0 41.0 24-25 36.851812243944394 40.0 37.0 41.0 30.0 41.0 26-27 36.711178250592866 40.0 37.0 41.0 30.0 41.0 28-29 36.55596727839403 40.0 37.0 41.0 30.0 41.0 30-31 36.41471659808063 40.0 36.5 41.0 30.0 41.0 32-33 36.35942457559538 40.0 36.5 41.0 29.5 41.0 34-35 36.48975924410493 40.0 37.0 41.0 30.0 41.0 36-37 36.45951580611101 40.0 37.0 41.0 30.0 41.0 38-39 36.36900867407735 40.0 37.0 41.0 29.5 41.0 40-41 36.23972449428406 40.0 36.0 41.0 29.0 41.0 42-43 36.13068820307208 40.0 36.0 41.0 28.5 41.0 44-45 35.98992255194854 40.0 36.0 41.0 28.0 41.0 46-47 35.827595697417486 40.0 35.5 41.0 27.5 41.0 48-49 35.66495495248574 40.0 35.0 41.0 27.0 41.0 50-51 35.50345165239477 39.5 35.0 41.0 26.5 41.0 52-53 35.32662547589308 39.0 35.0 41.0 26.0 41.0 54-55 35.11472596258635 39.0 35.0 41.0 26.0 41.0 56-57 34.847078763650316 39.0 35.0 41.0 25.0 41.0 58-59 34.62386271830392 38.0 34.5 40.0 25.0 41.0 60-61 34.34420301204269 38.0 34.0 40.0 24.0 41.0 62-63 34.04297035595563 37.0 34.0 40.0 23.0 41.0 64-65 33.73582386767791 37.0 34.0 40.0 23.0 41.0 66-67 33.40233424172301 36.0 34.0 39.0 22.0 41.0 68-69 33.037539758363124 36.0 33.0 39.0 22.0 41.0 70-71 32.66060567795759 35.0 33.0 38.5 20.5 40.0 72-73 32.26678155316364 35.0 33.0 37.5 20.0 40.0 74-75 31.865041810723437 35.0 32.5 37.0 18.5 39.0 76-77 29.1093767741986 33.0 28.5 34.5 11.0 36.5 78-79 30.772491291335974 34.5 31.5 36.0 12.5 37.0 80-81 30.970520894920455 35.0 32.0 35.5 13.5 37.0 82-83 30.813772936513217 35.0 32.0 35.0 11.0 37.0 84-85 30.583263344257503 35.0 32.0 35.0 7.5 36.0 86-87 30.343974772608917 35.0 32.0 35.0 4.0 36.0 88-89 30.06474413690581 35.0 31.0 35.0 2.0 36.0 90-91 29.881169316789155 34.0 31.0 35.0 2.0 35.0 92-93 29.735010101919755 34.0 31.0 35.0 2.0 35.0 94-95 29.631977535627538 34.0 31.0 35.0 2.0 35.0 96-97 29.4377912948599 34.0 31.0 35.0 2.0 35.0 98-99 29.16904025889106 34.0 31.0 35.0 2.0 35.0 100-101 28.078194601607173 33.0 28.5 34.5 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 61862.0 3 20742.0 4 11276.0 5 7970.0 6 6953.0 7 7007.0 8 7155.0 9 7837.0 10 8424.0 11 9216.0 12 9868.0 13 10777.0 14 11400.0 15 12586.0 16 13768.0 17 14645.0 18 13647.0 19 12344.0 20 11512.0 21 11273.0 22 12210.0 23 13599.0 24 15718.0 25 19276.0 26 22861.0 27 27685.0 28 33267.0 29 39622.0 30 48793.0 31 60203.0 32 76695.0 33 101766.0 34 147968.0 35 220984.0 36 381101.0 37 725294.0 38 751695.0 39 95762.0 40 3.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.292742217198544 19.34917490066751 13.156820667562693 26.201262214571248 2 15.241559512808866 20.830984040470486 37.49409413877534 26.43336230794531 3 18.182364006872056 24.37452379359685 28.986404358175736 28.456707841355357 4 13.205093106372647 16.35240730232496 35.09702530140021 35.345474289902185 5 14.210596400850406 37.438551462721605 34.059053260077036 14.291798876350953 6 33.97906890086605 35.09796320840846 16.71789480416168 14.205073086563806 7 29.31192001983842 31.75485192967802 20.5684295018207 18.364798548662865 8 27.187279138107574 34.88624327747792 19.490794851564495 18.435682732850022 9 27.114699281706052 15.315871183471996 19.0438605020553 38.525569032766654 10-11 26.019090092386744 25.233089907191914 27.378361371950753 21.369458628470586 12-13 26.330468234436168 22.500670933997224 27.398921448108048 23.76993938345856 14-15 23.53857047528458 24.073357404020445 24.649112359422237 27.738959761272735 16-17 23.83124769150251 27.245164717413807 25.379327739427897 23.544259851655788 18-19 23.84475305701335 26.708994125470348 26.632446432929736 22.81380638458657 20-21 24.29155887474286 25.785911004834176 26.690131412474045 23.232398707948914 22-23 24.207273372141227 25.501145360909007 26.35778820130617 23.933793065643595 24-25 23.907272321481013 25.722236579180585 26.455975039775296 23.914516059563105 26-27 23.705235377784682 26.020477252192652 26.447358589133117 23.82692878088955 28-29 23.78192626857884 26.369621687289925 26.181600086016132 23.666851958115103 30-31 24.27284871647223 25.94912098952132 26.058674016759948 23.719356277246504 32-33 23.96679219372776 25.97721585123028 26.01815532819379 24.037836626848172 34-35 24.188470535753765 26.009701461974327 26.210345408791035 23.591482593480876 36-37 24.144814100236136 25.947412229997752 26.2544200280415 23.65335364172461 38-39 24.074832698780472 26.058628148761574 26.15930498883027 23.70723416362768 40-41 24.257040312915123 25.844767393863016 26.139226607313642 23.758965685908215 42-43 24.046626848323243 25.83270911523754 25.946088114523068 24.17457592191615 44-45 23.870055736689054 25.881510465741787 26.14997201010214 24.098461787467016 46-47 23.999032778654954 25.853363174483107 25.972666859958654 24.17493718690329 48-49 23.831351395802777 26.02392944616756 26.047262034924806 24.09745712310486 50-51 24.006448529804057 26.019354399770673 26.016825500571123 23.957371569854153 52-53 24.200568471590614 25.86106870179192 25.953344999476297 23.985017827141174 54-55 23.61659327804851 25.757920342215556 26.295797189642823 24.329689190093106 56-57 23.76140328665261 25.840776720571878 26.041179582043462 24.35664041073205 58-59 23.77877512115046 25.81628595702134 26.208653392286347 24.19628552954185 60-61 23.962265597811342 25.864224612986455 26.19737580822082 23.97613398098139 62-63 23.840872762304834 25.812821739558945 26.182477525959452 24.16382797217677 64-65 23.554492933381205 25.65174462251526 26.21485458759017 24.578907856513364 66-67 23.634113776019223 25.85011642255766 25.997311354573643 24.518458446849476 68-69 23.605099227158888 25.77608446861727 26.113361017599967 24.50545528662387 70-71 23.57096458299331 25.59875958870573 26.074049290027745 24.756226538273218 72-73 23.549606629698296 25.90803338348068 25.8733724753551 24.66898751146592 74-75 23.4589677349238 25.945187180392224 25.88317692879216 24.712668155891816 76-77 23.44509148829352 25.602870977712143 25.993779221225218 24.958258312769114 78-79 23.405515873171357 25.631740073635527 26.05942496894848 24.903319084244636 80-81 23.58433280641857 25.82781770446676 25.748290791658423 24.839558697456248 82-83 23.529274503388795 25.815264792678537 25.833198031749504 24.822262672183165 84-85 23.470368936652722 25.866218113714506 25.738189908015528 24.925223041617244 86-87 23.243601302679714 25.993574117257502 25.758979434758743 25.003845145304044 88-89 23.20744745149504 25.67875373745777 25.878526467964804 25.23527234308239 90-91 23.25959336913134 25.58751663199792 25.927734071333063 25.225155927537678 92-93 23.340061063743136 25.528105073383404 25.913226152127233 25.21860771074622 94-95 23.167743827000866 25.525983430553218 25.905933091465116 25.4003396509808 96-97 23.032539334202443 25.355406933392505 25.998639231573744 25.61341450083131 98-99 22.78499640342172 25.342980113834273 25.982027386854618 25.889996095889394 100-101 22.795126998426937 25.455873173529874 25.92309321266555 25.825906615377637 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 64.0 1 52.0 2 73.5 3 124.5 4 110.0 5 107.5 6 194.5 7 387.0 8 573.5 9 617.0 10 538.0 11 449.0 12 420.5 13 462.0 14 529.5 15 562.5 16 640.0 17 731.5 18 844.0 19 942.5 20 1022.5 21 1183.0 22 1404.5 23 1692.5 24 2029.0 25 2537.0 26 3473.0 27 4874.0 28 6805.5 29 9741.0 30 13661.0 31 18847.0 32 26116.5 33 32145.0 34 37251.5 35 44343.0 36 53108.5 37 62011.0 38 69743.5 39 76838.5 40 82798.5 41 88360.5 42 94205.0 43 100733.5 44 107827.5 45 115165.0 46 121487.5 47 126585.0 48 131695.0 49 135084.0 50 135484.0 51 135273.0 52 133633.5 53 131115.0 54 128332.0 55 122283.0 56 113086.0 57 101280.5 58 90645.5 59 79731.5 60 66473.0 61 55122.0 62 45733.0 63 35618.0 64 26032.5 65 19450.5 66 14737.0 67 11235.5 68 8814.0 69 6980.0 70 5510.0 71 4209.5 72 3223.5 73 2618.5 74 2135.5 75 1626.0 76 1171.0 77 754.0 78 442.0 79 289.5 80 200.5 81 121.5 82 69.0 83 42.0 84 29.5 85 21.0 86 22.0 87 19.0 88 11.5 89 6.0 90 2.5 91 2.5 92 3.5 93 5.5 94 5.5 95 1.5 96 1.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.1496689467769786 2 3.915472773760067E-4 3 0.005840580220858768 4 0.004926969906981419 5 0.02669047274113113 6 0.0013704154708160236 7 1.3051575912533558E-4 8 0.0021535100255680372 9 6.525787956266779E-5 10-11 0.10191649340699643 12-13 2.120881085786703E-4 14-15 0.005840580220858768 16-17 0.0 18-19 2.6103151825067117E-4 20-21 7.994090246426805E-4 22-23 3.09974927922672E-4 24-25 0.0015661891095040269 26-27 0.00309974927922672 28-29 0.007259939101346791 30-31 0.01613501072186961 32-33 0.015808721324056273 34-35 0.012415311586797548 36-37 6.852077354080118E-4 38-39 2.4471704836000424E-4 40-41 0.005318517184357425 42-43 0.008597725632381481 44-45 0.00866298351194415 46-47 0.010294430501010844 48-49 0.012415311586797548 50-51 0.006183184088562774 52-53 0.0017945916879733644 54-55 9.46239253658683E-4 56-57 0.006101611739109439 58-59 0.009446078066696163 60-61 0.007814631077629468 62-63 0.01833746415710965 64-65 0.03471719192733927 66-67 0.037180676880829974 68-69 0.02641312675298979 70-71 0.04124297988360605 72-73 0.02589106371648845 74-75 0.024618535065016423 76-77 0.2371797632705161 78-79 0.06891232081817719 80-81 0.05383775063920093 82-83 0.020278886074099018 84-85 0.03217213462439522 86-87 0.08029982080186272 88-89 0.2623529903118152 90-91 0.3151629293479041 92-93 0.05127637886636622 94-95 0.00481276861774675 96-97 0.010408631790245513 98-99 0.0014846167600506923 100-101 0.0013377865310346896 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 3064764.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 60.19369667247847 #Duplication Level Percentage of deduplicated Percentage of total 1 78.87428196626787 47.47734603937068 2 11.87059411118103 14.2906988250108 3 3.8243606631756326 6.906072171760578 4 1.6809892465041838 4.04739827255084 5 0.9102344232974547 2.7395187388407685 6 0.5988954269087526 2.1629837799527976 7 0.3930296601878601 1.6560535704044737 8 0.29448599368422684 1.418096046249741 9 0.24406885678057896 1.3222266059023886 >10 1.2301142853508185 13.218147635615175 >50 0.06124706800404746 2.482776060064085 >100 0.01639417426604107 1.6193798080631971 >500 9.780932940746524E-4 0.4132374415474057 >1k 3.2603109748715193E-4 0.24606500466708195 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 6.525787956266779E-5 0.0 0.0 3.2628939781333896E-5 6 0.0 6.525787956266779E-5 0.0 0.0 3.2628939781333896E-5 7 0.0 6.525787956266779E-5 0.0 0.0 3.2628939781333896E-5 8 0.0 6.525787956266779E-5 0.0 0.0 3.2628939781333896E-5 9 0.0 6.525787956266779E-5 0.0 6.525787956266779E-5 3.2628939781333896E-5 10-11 0.0 6.525787956266779E-5 0.0 6.525787956266779E-5 3.2628939781333896E-5 12-13 0.0 6.525787956266779E-5 0.0 6.525787956266779E-5 1.1420128923466863E-4 14-15 0.0 6.525787956266779E-5 0.0 6.525787956266779E-5 1.957736386880034E-4 16-17 0.0 6.525787956266779E-5 0.0 6.525787956266779E-5 2.284025784693373E-4 18-19 0.0 6.525787956266779E-5 0.0 6.525787956266779E-5 2.284025784693373E-4 20-21 0.0 6.525787956266779E-5 0.0 1.3051575912533558E-4 2.4471704836000424E-4 22-23 0.0 6.525787956266779E-5 0.0 2.284025784693373E-4 2.9366045803200507E-4 24-25 0.0 6.525787956266779E-5 0.0 4.731196268293415E-4 3.2628939781333897E-4 26-27 0.0 6.525787956266779E-5 0.0 0.0010604405428933515 3.2628939781333897E-4 28-29 0.0 6.525787956266779E-5 0.0 0.004143875352229405 3.7523280748533985E-4 30-31 0.0 6.525787956266779E-5 0.0 0.017619627481920305 3.915472773760068E-4 32-33 0.0 6.525787956266779E-5 0.0 0.04667569835719814 3.915472773760068E-4 34-35 0.0 8.157234945333474E-5 0.0 0.08584674056468948 3.915472773760068E-4 36-37 0.0 9.78868193440017E-5 0.0 0.14417097042382382 3.915472773760068E-4 38-39 0.0 9.78868193440017E-5 0.0 0.23760393948767344 3.915472773760068E-4 40-41 0.0 9.78868193440017E-5 0.0 0.3435664214275552 3.915472773760068E-4 42-43 0.0 1.3051575912533558E-4 0.0 0.4549616218410292 3.915472773760068E-4 44-45 0.0 1.4683022901600253E-4 0.0 0.5924762885494609 3.915472773760068E-4 46-47 0.0 1.6314469890666949E-4 0.0 0.7455386450636983 4.241762171573407E-4 48-49 0.0 1.6314469890666949E-4 0.0 0.9006403103142688 4.241762171573407E-4 50-51 0.0 1.6314469890666949E-4 0.0 1.0666400414518051 4.241762171573407E-4 52-53 0.0 1.6314469890666949E-4 0.0 1.2436520397655415 5.383775063920093E-4 54-55 0.0 1.957736386880034E-4 0.0 1.4514494427629665 6.036353859546771E-4 56-57 0.0 1.957736386880034E-4 0.0 1.684436387271581 6.852077354080118E-4 58-59 0.0 2.284025784693373E-4 0.0 1.9236065158687585 7.015222052986788E-4 60-61 0.0 2.284025784693373E-4 0.0 2.1815709137799844 7.178366751893457E-4 62-63 0.0 2.284025784693373E-4 0.0 2.4554582343045013 7.504656149706796E-4 64-65 0.0 2.284025784693373E-4 0.0 2.7504075354578688 7.504656149706796E-4 66-67 0.0 2.9366045803200507E-4 0.0 3.0906294905578373 7.667800848613466E-4 68-69 0.0 2.9366045803200507E-4 0.0 3.4597770007739586 7.830945547520136E-4 70-71 0.0 3.0997492792267205E-4 0.0 3.843477018132554 7.830945547520136E-4 72-73 0.0 3.2628939781333897E-4 0.0 4.2428878699958625 9.136103138773491E-4 74-75 0.0 3.2628939781333897E-4 0.0 4.664992149477088 9.78868193440017E-4 76-77 0.0 3.2628939781333897E-4 0.0 5.1418477899113935 0.0010114971332213507 78-79 0.0 3.2628939781333897E-4 0.0 5.669425117235781 0.0010930694826746857 80-81 0.0 3.2628939781333897E-4 0.0 6.216710324188094 0.0011420128923466865 82-83 0.0 3.2628939781333897E-4 0.0 6.785269599877838 0.0011746418321280203 84-85 0.0 3.2628939781333897E-4 0.0 7.379099989428223 0.0011746418321280203 86-87 0.0 3.2628939781333897E-4 0.0 8.022053247819407 0.0012398997116906882 88-89 0.0 3.2628939781333897E-4 0.0 8.716625488944663 0.0012398997116906882 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 2435 0.0 51.14402 1 GTATCAA 4630 0.0 41.47562 1 TCAACGC 5735 0.0 32.52151 4 CAACGCA 5900 0.0 31.671453 5 ATCAACG 6140 0.0 30.453657 3 AACGCAG 6355 0.0 29.551573 6 TATCAAC 6420 0.0 29.495073 2 GTACATG 9685 0.0 29.299974 1 TACATGG 10215 0.0 27.225183 2 ACATGGG 10580 0.0 26.151373 3 CATGGGG 8470 0.0 24.037289 4 ACGCAGA 7935 0.0 23.307825 7 TATACCG 235 4.603862E-9 22.256264 5 CGCAGAG 8270 0.0 22.076221 8 ATGGGGG 5250 0.0 20.920889 5 GCAGAGT 9410 0.0 18.74491 9 TATATAC 1020 0.0 17.68052 3 AGAGTAC 8240 0.0 17.656038 10-11 GTATTAG 925 0.0 17.471481 1 GACCGTA 165 0.0014554363 17.28886 7 >>END_MODULE