##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921407_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3054828 Sequences flagged as poor quality 0 Sequence length 101 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.563934205133645 33.0 31.0 34.0 30.0 34.0 2 31.700112084870245 34.0 31.0 34.0 30.0 34.0 3 31.780709748633967 34.0 31.0 34.0 30.0 34.0 4 35.26808907080857 37.0 35.0 37.0 33.0 37.0 5 35.03445824118412 37.0 35.0 37.0 32.0 37.0 6 34.99426547092013 37.0 35.0 37.0 32.0 37.0 7 34.870069607846986 37.0 35.0 37.0 32.0 37.0 8 34.83295720741069 37.0 35.0 37.0 32.0 37.0 9 36.47275329412982 39.0 37.0 39.0 32.0 39.0 10-11 36.331642730785504 39.0 37.0 39.0 32.0 39.0 12-13 36.27257868528113 39.0 37.0 39.0 32.0 39.0 14-15 37.53717590646674 40.0 38.0 41.0 32.0 41.0 16-17 37.516763627935845 40.0 38.0 41.0 32.0 41.0 18-19 37.48158652467504 40.0 38.0 41.0 32.0 41.0 20-21 37.44708867405956 40.0 38.0 41.0 32.0 41.0 22-23 37.342024330011384 40.0 38.0 41.0 31.5 41.0 24-25 37.28087915260696 40.0 38.0 41.0 31.0 41.0 26-27 37.14968224070226 40.0 37.5 41.0 31.0 41.0 28-29 37.00270375287904 40.0 37.0 41.0 30.5 41.0 30-31 36.86923633671029 40.0 37.0 41.0 30.0 41.0 32-33 36.82559918267084 40.0 37.0 41.0 30.0 41.0 34-35 36.954956874822415 40.0 37.0 41.0 30.0 41.0 36-37 36.93516067025705 40.0 37.0 41.0 30.0 41.0 38-39 36.851163469759996 40.0 37.0 41.0 30.0 41.0 40-41 36.7353937766709 40.0 37.0 41.0 30.0 41.0 42-43 36.64307352165163 40.0 37.0 41.0 30.0 41.0 44-45 36.516090758628636 40.0 37.0 41.0 30.0 41.0 46-47 36.369819348257906 40.0 36.0 41.0 29.5 41.0 48-49 36.219821377832076 40.0 36.0 41.0 29.0 41.0 50-51 36.07555040742065 40.0 36.0 41.0 28.5 41.0 52-53 35.9120808110964 39.5 35.0 41.0 28.0 41.0 54-55 35.7136426338897 39.0 35.0 41.0 28.0 41.0 56-57 35.459976961059674 39.0 35.0 41.0 28.0 41.0 58-59 35.242416103296165 39.0 35.0 41.0 27.0 41.0 60-61 34.97703684135408 38.0 35.0 40.0 26.5 41.0 62-63 34.68911981296492 38.0 34.5 40.0 26.0 41.0 64-65 34.382151302790206 37.0 34.0 40.0 26.0 41.0 66-67 34.04867426251167 37.0 34.0 39.5 26.0 41.0 68-69 33.68376271921038 36.0 34.0 39.0 26.0 41.0 70-71 33.30222323482697 36.0 34.0 39.0 25.0 40.5 72-73 32.89910970437616 35.0 33.0 38.0 24.0 40.0 74-75 32.48404918378384 35.0 33.0 37.0 23.5 39.0 76-77 29.696168000293305 33.0 29.0 34.5 19.0 36.5 78-79 31.35631220481153 34.5 31.5 36.0 20.5 38.0 80-81 31.545682604716205 35.0 32.5 36.0 22.0 37.0 82-83 31.376569319123696 35.0 33.0 35.0 20.5 37.0 84-85 31.135584556642797 35.0 32.0 35.0 20.0 36.5 86-87 30.88619391991955 35.0 32.0 35.0 19.5 36.0 88-89 30.605126868026613 35.0 32.0 35.0 17.5 36.0 90-91 30.42362303213143 35.0 32.0 35.0 13.5 35.5 92-93 30.27710561773036 34.5 32.0 35.0 10.0 35.0 94-95 30.177357939628678 34.0 32.0 35.0 4.5 35.0 96-97 29.98857382477835 34.0 32.0 35.0 2.0 35.0 98-99 29.727917742013624 34.0 31.0 35.0 2.0 35.0 100-101 28.645277410053858 33.5 29.0 34.5 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 46590.0 3 16060.0 4 8717.0 5 6334.0 6 5607.0 7 5583.0 8 5994.0 9 6553.0 10 7380.0 11 8031.0 12 8632.0 13 9433.0 14 10419.0 15 11394.0 16 12281.0 17 13376.0 18 12279.0 19 11205.0 20 10874.0 21 10775.0 22 11396.0 23 12787.0 24 14899.0 25 18127.0 26 21480.0 27 26609.0 28 31860.0 29 38461.0 30 47064.0 31 58304.0 32 74588.0 33 98659.0 34 141768.0 35 211700.0 36 365059.0 37 720354.0 38 820685.0 39 113509.0 40 2.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.06497724453835 19.623991446661137 13.456131843646487 25.85489946515403 2 15.199046749224992 20.95413462703081 37.87895155508853 25.967867068655657 3 18.06438729277427 24.560504674855302 29.297953277636644 28.07715475473378 4 13.310306582494954 16.627579460950116 35.46568117149004 34.59643278506489 5 14.217116085835832 37.44273114482701 34.27997757706574 14.060175192271423 6 33.71799735955403 35.38174674699087 16.885923633955493 14.014332259499598 7 28.924762228372064 31.997412615203114 20.827923852846418 18.249901303578408 8 26.694797765443596 35.40514838390766 19.659349634748562 18.24070421590018 9 26.83011940443128 15.65780462926227 19.363545181594514 38.14853078471194 10-11 25.685123867275415 25.499198424901653 27.760944482240163 21.054733225582765 12-13 26.049317488204704 22.809403765002116 27.6585126647438 23.482766082049377 14-15 23.288059370944165 24.50107222636621 24.840786538317055 27.37008186437257 16-17 23.579909539767115 27.632582967982106 25.656543767020217 23.13096372523056 18-19 23.59300266693204 27.09227480104399 26.89573300694214 22.418989525081827 20-21 23.99151695275482 26.158926685344387 26.92149744082957 22.928058921071226 22-23 23.85229697733319 25.967446843822827 26.587025286931894 23.59323089191209 24-25 23.67735197215242 26.13948375516794 26.576881445960854 23.60628282671879 26-27 23.475943303886222 26.462136573235973 26.60707516379452 23.45484495908329 28-29 23.581299170162584 26.716142307696717 26.386937618886975 23.315620903253727 30-31 24.027341243337393 26.268661847326445 26.314727144148037 23.389269765188125 32-33 23.676448994284744 26.252202378331233 26.319253881776216 23.752094745607806 34-35 23.935952530462394 26.352465376428015 26.43889744115253 23.272684651957064 36-37 23.869929185158753 26.36351509388102 26.499219670043594 23.267336050916633 38-39 23.86654923474202 26.435931812010498 26.399104758890008 23.298414194357473 40-41 23.990338123132787 26.237966848311085 26.32499707007529 23.44669795848084 42-43 23.73810951814739 26.1784737754637 26.199573487892135 23.88384321849677 44-45 23.69963390949143 26.23015168243674 26.344062876228996 23.726151531842834 46-47 23.735931031423448 26.143732113775826 26.246856943435702 23.873479911365028 48-49 23.54842717528647 26.3366026750469 26.358112004677707 23.756858144988925 50-51 23.68091917402797 26.242402784863955 26.384546473407553 23.692131567700514 52-53 23.861491621888415 26.120921160982206 26.30911829690922 23.70846892022016 54-55 23.368368951641944 26.06146204198251 26.545045888497953 24.02512311787759 56-57 23.50848706071072 26.161196863797816 26.265496865434667 24.064819210056797 58-59 23.51934667526592 26.192376568571923 26.408989271671913 23.87928748449025 60-61 23.69992987547167 26.07190350445857 26.52427546171862 23.703891158351137 62-63 23.59988114989928 26.06670830239984 26.494650517677314 23.838760030023565 64-65 23.306300951782156 25.907696942606538 26.47550794188775 24.310494163723558 66-67 23.3984966247083 26.116479165015644 26.25269266867126 24.2323315416048 68-69 23.35552952756357 26.106516191837727 26.354045888361306 24.1839083922374 70-71 23.307747552905354 25.865616031863564 26.391484709936307 24.43515170529478 72-73 23.33301135228765 26.143873137285077 26.143201888664414 24.379913621762864 74-75 23.23185374418067 26.179795589195447 26.151014097364612 24.437336569259273 76-77 23.191861347554095 25.879963080709672 26.28057840221516 24.647597169521074 78-79 23.14719571672297 25.930349575577143 26.346910322163026 24.575544385536865 80-81 23.278416133835925 26.07161579261026 26.06072526339113 24.58924281016268 82-83 23.238447446872254 26.142682441690855 26.133514723192196 24.48535538824469 84-85 23.205727564748564 26.092301263985267 26.079628501403256 24.62234266986291 86-87 22.95457155311698 26.273904783684245 26.0476283070185 24.72389535618027 88-89 22.914541723771727 26.05431768428968 26.14750198619763 24.88363860574096 90-91 23.022126747833763 25.846723977573077 26.169918867934445 24.961230406658714 92-93 23.01837656331474 25.837272462864313 26.193169759014364 24.951181214806585 94-95 22.87996461806299 25.845264261297306 26.16687061695125 25.10790050368846 96-97 22.732391894643726 25.777269670653606 26.198749768372558 25.29158866633011 98-99 22.544028223369097 25.72739026314062 26.156210926931244 25.572370586559035 100-101 22.534725768562964 25.831300461700827 26.09950202828867 25.534471741447533 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 73.0 1 61.5 2 70.5 3 113.5 4 116.5 5 106.5 6 168.5 7 352.5 8 542.0 9 586.0 10 498.0 11 408.5 12 392.0 13 419.0 14 460.5 15 518.5 16 563.0 17 645.5 18 756.0 19 813.0 20 885.0 21 1030.5 22 1240.0 23 1521.5 24 1873.5 25 2408.0 26 3279.5 27 4619.5 28 6734.5 29 9933.5 30 14245.0 31 19852.5 32 27650.5 33 34815.5 34 40772.5 35 48143.0 36 57294.0 37 66385.0 38 74479.0 39 82147.5 40 89019.5 41 95503.5 42 102329.0 43 109448.5 44 115845.0 45 123146.0 46 128058.5 47 130826.5 48 134585.5 49 136681.0 50 136578.0 51 134014.5 52 130632.5 53 126720.5 54 120958.5 55 113601.0 56 104627.5 57 93835.0 58 82998.0 59 71441.5 60 58897.5 61 48315.0 62 39090.5 63 29818.5 64 21767.0 65 16116.0 66 12387.5 67 9882.0 68 7763.0 69 5970.0 70 4585.5 71 3434.5 72 2473.5 73 1859.5 74 1469.0 75 1115.0 76 787.0 77 506.0 78 319.5 79 177.0 80 103.5 81 68.5 82 39.5 83 19.5 84 18.5 85 14.5 86 9.0 87 8.0 88 5.5 89 4.0 90 4.5 91 3.0 92 2.0 93 1.5 94 1.5 95 1.5 96 0.0 97 0.5 98 0.5 99 0.5 100 0.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.15683370716780126 2 5.892312103987524E-4 3 0.0061541926419425245 4 0.003928208069325016 5 0.02658087460243261 6 0.0013421377570193805 7 1.964104034662508E-4 8 0.002717010581283136 9 0.0 10-11 0.10920418432723544 12-13 2.946156051993762E-4 14-15 0.006628851116985964 16-17 1.6367533622187565E-4 18-19 2.291454707106259E-4 20-21 9.656844837090665E-4 22-23 2.946156051993762E-4 24-25 0.0018495312993071949 26-27 0.0028152157830162615 28-29 0.006334235511786588 30-31 0.015320011470367562 32-33 0.015041763398790372 34-35 0.013290437301216306 36-37 9.984195509534417E-4 38-39 2.7824807157718866E-4 40-41 0.004648379548701269 42-43 0.009296759097402537 44-45 0.008363809680937848 46-47 0.009083981160314098 48-49 0.011113555329465358 50-51 0.005646799099654711 52-53 0.0017185910303296943 54-55 0.0010475221518200042 56-57 0.005826841969498774 58-59 0.00975505003882379 60-61 0.008576587618026285 62-63 0.018348005190472264 64-65 0.03545207782565827 66-67 0.0381690884069414 68-69 0.027857542224963238 70-71 0.04285020302288705 72-73 0.02677728500589886 74-75 0.025598822585101353 76-77 0.2501122812806482 78-79 0.0724099687445578 80-81 0.056189742924969914 82-83 0.02072129756568946 84-85 0.03386442706430607 86-87 0.08473472156206503 88-89 0.26769101239087767 90-91 0.32460092679522384 92-93 0.05564961431543773 94-95 0.0053030808935887715 96-97 0.011588213804508798 98-99 0.001784061164818445 100-101 0.0011784624207975048 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 3054828.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 62.43197557936392 #Duplication Level Percentage of deduplicated Percentage of total 1 78.4515116674972 48.97882860589369 2 12.346388726408893 15.416188789209878 3 3.9753178101403552 7.445608333286794 4 1.769675140003767 4.419372604964904 5 0.9462768490319563 2.953896656504026 6 0.5927602502710169 2.220431608160266 7 0.4010239605413767 1.7525702677881319 8 0.272665689983205 1.3618446158689492 9 0.20690974819690083 1.1626005911905122 >10 0.979633145339658 10.568711875394854 >50 0.04429506000465878 1.8904747108816677 >100 0.012649431985084617 1.3805173268582471 >500 7.350169614701642E-4 0.3187943886282472 >1k 1.5750363445439419E-4 0.1301596253697786 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 3.273506724437513E-5 0.0 5 0.0 0.0 0.0 3.273506724437513E-5 0.0 6 0.0 0.0 0.0 3.273506724437513E-5 0.0 7 0.0 0.0 0.0 3.273506724437513E-5 0.0 8 0.0 0.0 0.0 3.273506724437513E-5 0.0 9 0.0 0.0 0.0 3.273506724437513E-5 0.0 10-11 0.0 0.0 0.0 3.273506724437513E-5 0.0 12-13 0.0 1.6367533622187566E-5 0.0 3.273506724437513E-5 0.0 14-15 0.0 3.273506724437513E-5 0.0 3.273506724437513E-5 0.0 16-17 0.0 3.273506724437513E-5 0.0 3.273506724437513E-5 3.273506724437513E-5 18-19 0.0 3.273506724437513E-5 0.0 3.273506724437513E-5 3.273506724437513E-5 20-21 0.0 3.273506724437513E-5 0.0 6.547013448875026E-5 6.547013448875026E-5 22-23 0.0 3.273506724437513E-5 0.0 1.964104034662508E-4 1.1457273535531296E-4 24-25 0.0 3.273506724437513E-5 0.0 5.237610759100022E-4 1.3094026897750053E-4 26-27 0.0 3.273506724437513E-5 0.0 8.511117483537534E-4 1.3094026897750053E-4 28-29 0.0 3.273506724437513E-5 0.0 0.0037972678003475157 1.3094026897750053E-4 30-31 0.0 3.273506724437513E-5 0.0 0.01715317523605257 1.6367533622187568E-4 32-33 0.0 3.273506724437513E-5 0.0 0.04437238364975049 1.6367533622187568E-4 34-35 0.0 3.273506724437513E-5 0.0 0.08314707080071285 1.6367533622187568E-4 36-37 0.0 3.273506724437513E-5 0.0 0.1427085256518534 1.6367533622187568E-4 38-39 3.273506724437513E-5 3.273506724437513E-5 0.0 0.23495594514650253 1.6367533622187568E-4 40-41 3.273506724437513E-5 3.273506724437513E-5 0.0 0.33481426777546885 1.964104034662508E-4 42-43 3.273506724437513E-5 3.273506724437513E-5 0.0 0.4443294352415259 1.964104034662508E-4 44-45 3.273506724437513E-5 3.273506724437513E-5 0.0 0.5818330852015237 1.964104034662508E-4 46-47 3.273506724437513E-5 3.273506724437513E-5 0.0 0.7368827312045064 2.1277793708843835E-4 48-49 3.273506724437513E-5 3.273506724437513E-5 0.0 0.8913758810643349 2.2914547071062593E-4 50-51 3.273506724437513E-5 3.273506724437513E-5 0.0 1.0540364302016347 2.2914547071062593E-4 52-53 3.273506724437513E-5 3.273506724437513E-5 0.0 1.227073995655402 2.6188053795500105E-4 54-55 3.273506724437513E-5 3.273506724437513E-5 0.0 1.4342869713122965 2.946156051993762E-4 56-57 3.273506724437513E-5 3.273506724437513E-5 0.0 1.6676552656974468 2.946156051993762E-4 58-59 3.273506724437513E-5 3.273506724437513E-5 0.0 1.9097638230368452 3.2735067244375136E-4 60-61 3.273506724437513E-5 3.273506724437513E-5 0.0 2.15887768476654 3.6008573968812646E-4 62-63 3.273506724437513E-5 3.273506724437513E-5 0.0 2.423098780029514 3.928208069325016E-4 64-65 3.273506724437513E-5 3.273506724437513E-5 0.0 2.7194984463937084 4.255558741768767E-4 66-67 3.273506724437513E-5 3.273506724437513E-5 0.0 3.0667847747892845 4.5829094142125186E-4 68-69 3.273506724437513E-5 3.273506724437513E-5 0.0 3.439391677698384 4.5829094142125186E-4 70-71 6.547013448875026E-5 3.273506724437513E-5 0.0 3.8183328161192707 4.5829094142125186E-4 72-73 6.547013448875026E-5 3.273506724437513E-5 0.0 4.207454560453158 4.91026008665627E-4 74-75 6.547013448875026E-5 3.273506724437513E-5 0.0 4.6287057732873995 4.91026008665627E-4 76-77 6.547013448875026E-5 3.273506724437513E-5 0.0 5.122465160067932 4.91026008665627E-4 78-79 6.547013448875026E-5 6.547013448875026E-5 0.0 5.655490260008092 5.564961431543773E-4 80-81 6.547013448875026E-5 6.547013448875026E-5 0.0 6.2007910101648935 5.564961431543773E-4 82-83 8.183766811093783E-5 6.547013448875026E-5 0.0 6.755912280495007 5.728636767765649E-4 84-85 1.3094026897750053E-4 6.547013448875026E-5 0.0 7.353409095372964 5.892312103987524E-4 86-87 1.3094026897750053E-4 6.547013448875026E-5 0.0 8.013888179629099 6.219662776431275E-4 88-89 1.3094026897750053E-4 6.547013448875026E-5 0.0 8.723993625827706 6.219662776431275E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 2515 0.0 47.43452 1 GTATCAA 4380 0.0 40.47562 1 TCAACGC 5670 0.0 31.050343 4 ATCAACG 5725 0.0 31.000711 3 CAACGCA 5685 0.0 30.861609 5 TATCAAC 6070 0.0 29.239206 2 AACGCAG 6065 0.0 29.081915 6 GTACATG 8480 0.0 27.40765 1 TACATGG 8905 0.0 25.89912 2 ACATGGG 9135 0.0 23.895979 3 ACGCAGA 7520 0.0 23.012102 7 CATGGGG 7565 0.0 22.080519 4 CGCAGAG 7745 0.0 21.975279 8 ATGGGGG 4730 0.0 18.898153 5 AGAGTAC 7655 0.0 18.041544 10-11 GCAGAGT 9185 0.0 17.857174 9 GAGTACA 6595 0.0 17.296381 1 AGTACAC 2560 0.0 17.239256 3 GTACACT 2775 0.0 16.587627 4 TACACTG 3615 0.0 16.57238 5 >>END_MODULE