##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921403_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3953771 Sequences flagged as poor quality 0 Sequence length 101 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.187819931908045 31.0 31.0 34.0 26.0 34.0 2 30.241496535838824 31.0 31.0 34.0 26.0 34.0 3 30.291989343844143 33.0 31.0 34.0 26.0 34.0 4 33.739343022142656 37.0 35.0 37.0 28.0 37.0 5 33.723231315116635 37.0 35.0 37.0 28.0 37.0 6 33.766492545976995 37.0 35.0 37.0 29.0 37.0 7 33.679634455308616 37.0 35.0 37.0 28.0 37.0 8 33.64223598180067 37.0 35.0 37.0 28.0 37.0 9 35.18100365448581 39.0 35.0 39.0 28.0 39.0 10-11 35.070069940823586 39.0 35.0 39.0 28.0 39.0 12-13 34.95223699096381 39.0 35.0 39.0 27.0 39.0 14-15 36.06729335108179 40.0 36.0 41.0 27.0 41.0 16-17 36.00870788925307 40.0 36.0 41.0 27.0 41.0 18-19 35.952382674666794 40.0 36.0 41.0 27.0 41.0 20-21 35.88559795192994 40.0 36.0 41.0 27.0 41.0 22-23 35.76818649840874 40.0 36.0 41.0 27.0 41.0 24-25 35.66544382565404 40.0 36.0 41.0 26.0 41.0 26-27 35.51663386675657 40.0 36.0 41.0 25.0 41.0 28-29 35.37636752356168 40.0 36.0 41.0 25.0 41.0 30-31 35.23348228817501 39.5 35.0 41.0 24.5 41.0 32-33 35.05661101768413 39.0 35.0 41.0 24.0 41.0 34-35 34.89565227728161 39.0 35.0 41.0 23.5 41.0 36-37 34.73203809730002 39.0 35.0 41.0 23.0 41.0 38-39 34.97366425622526 39.0 35.0 41.0 24.0 41.0 40-41 35.095931706717465 40.0 35.0 41.0 23.5 41.0 42-43 34.941653676958026 40.0 35.0 41.0 22.5 41.0 44-45 34.824789422553806 40.0 35.0 41.0 22.0 41.0 46-47 34.67997703964139 39.5 35.0 41.0 20.5 41.0 48-49 34.5395890404376 39.0 35.0 41.0 19.0 41.0 50-51 32.83282618037312 37.0 32.5 39.5 15.5 40.0 52-53 32.98257827780112 37.5 32.5 39.5 14.0 40.0 54-55 33.83222586740608 38.5 34.0 40.0 14.0 41.0 56-57 33.83766004657326 38.5 34.0 41.0 13.0 41.0 58-59 33.65238679731325 38.0 34.0 40.5 12.5 41.0 60-61 33.4005946474897 37.5 33.5 40.0 9.0 41.0 62-63 33.1062904250145 37.0 33.0 40.0 7.5 41.0 64-65 32.81188515976267 36.5 33.0 40.0 7.0 41.0 66-67 32.470125862119986 36.0 33.0 39.0 2.0 41.0 68-69 32.1031004324732 35.5 32.5 39.0 2.0 41.0 70-71 31.7291490832423 35.0 32.0 38.5 2.0 40.5 72-73 31.377709912890758 35.0 32.0 37.0 2.0 39.5 74-75 30.989341188450215 35.0 32.0 37.0 2.0 39.0 76-77 30.628788566662053 35.0 31.0 36.0 2.0 39.0 78-79 30.30195843411265 35.0 31.0 36.0 2.0 38.0 80-81 29.97427999750112 35.0 31.0 35.5 2.0 37.0 82-83 29.696548307931845 35.0 31.0 35.0 2.0 37.0 84-85 29.48080187244026 35.0 31.0 35.0 2.0 36.0 86-87 29.272857608596958 35.0 30.0 35.0 2.0 36.0 88-89 29.090560126016406 35.0 30.0 35.0 2.0 36.0 90-91 28.858335245010394 34.0 30.0 35.0 2.0 35.0 92-93 28.683886471927686 34.0 30.0 35.0 2.0 35.0 94-95 28.49574621291926 34.0 30.0 35.0 2.0 35.0 96-97 28.25614950891187 34.0 29.0 35.0 2.0 35.0 98-99 28.041539203965026 34.0 29.0 35.0 2.0 35.0 100-101 27.015157301725367 33.0 27.0 35.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 156906.0 3 25618.0 4 17576.0 5 13265.0 6 11847.0 7 12019.0 8 12645.0 9 13428.0 10 14566.0 11 15297.0 12 15317.0 13 15199.0 14 16073.0 15 16482.0 16 16676.0 17 17585.0 18 16638.0 19 15862.0 20 16245.0 21 16782.0 22 18547.0 23 21289.0 24 24668.0 25 29725.0 26 35405.0 27 42013.0 28 49843.0 29 59503.0 30 71530.0 31 86155.0 32 108101.0 33 140605.0 34 196101.0 35 286296.0 36 479042.0 37 854275.0 38 855531.0 39 139100.0 40 16.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.36689521491085 17.632115351280632 13.092841028859329 24.908148404949195 2 16.158203271307126 19.086243827579157 38.99770413276348 25.757848768350232 3 19.42629658702191 23.097435648279593 28.95358011720235 28.522687647496152 4 13.75320474779701 15.45491285844397 35.750522768355474 35.041359625403544 5 14.863129787952264 36.786023544439736 33.79134713245405 14.55949953515395 6 34.31497198365819 34.26652837682296 16.89267780574493 14.525821833773922 7 29.74735225282381 31.272785499846705 20.387602664392038 18.592259582937448 8 27.363851508179344 34.273712384057966 19.422051154265997 18.940384953496697 9 27.13385696100316 15.508143820188335 18.894538135704703 38.4634610831038 10-11 26.14847228959553 24.862021924451525 27.256268669082196 21.733237116870747 12-13 26.63253366391115 22.147836591675258 27.18976389407174 24.029865850341857 14-15 23.844221442482894 23.757848175862904 24.282729926597273 28.115200455056925 16-17 24.249071589885165 26.865419020766257 25.05722512868459 23.828284260663988 18-19 24.332004377093348 26.381499532679133 26.16081074636879 23.12568534385873 20-21 24.76673639929193 25.48148526696953 26.180156585963527 23.571621747775012 22-23 24.70697773753247 25.10658546808977 25.944061243832202 24.24237555054556 24-25 24.502105845127712 25.365698446014072 25.800531110714697 24.331664598143515 26-27 24.246500967845666 25.599549460316307 25.85468577209948 24.29926379973855 28-29 24.369816775389534 25.86830514515875 25.65174903118302 24.110129048268703 30-31 24.765774469875694 25.521422702002088 25.539230634095183 24.17357219402703 32-33 24.45773368192709 25.542746916078485 25.523055045166092 24.476464356828338 34-35 24.733945478584484 25.663735617196153 25.565314478429933 24.037004425789423 36-37 24.723026458393456 25.52170527126752 25.661548360694507 24.09371990964452 38-39 24.612556751720525 25.605458130986996 25.585222970599958 24.196762146692517 40-41 24.701749149833002 25.408377354004607 25.653759135580295 24.236114360582096 42-43 24.52156446881948 25.465450804489052 25.519113403621958 24.493871323069506 44-45 24.40924937639998 25.49808808275843 25.66972855564783 24.422933985193758 46-47 24.61489743713536 25.40673949601342 25.513004398728317 24.4653586681229 48-49 24.41919195759022 25.5147138206363 25.571152406483517 24.494941815289966 50-51 24.4604068591077 25.54642295262772 25.69789525222913 24.295274936035455 52-53 24.656268793988865 25.44102593605311 25.605646389032433 24.297058880925597 54-55 24.157950125481445 25.31018721793602 25.87422964023161 24.657633016350918 56-57 24.323715678547718 25.461965141434945 25.703562920925265 24.510756259092076 58-59 24.443430639590474 25.402528049128982 25.737311757031527 24.416729554249013 60-61 24.453852396814284 25.37802614817094 25.901666310974758 24.266455144040012 62-63 24.43430450191651 25.38927722621458 25.863810822230043 24.31260744963886 64-65 24.226413611835586 25.25144535774664 25.872334547408492 24.649806483009286 66-67 24.297692724885827 25.360790515436744 25.76016655768948 24.58135020198795 68-69 24.248149502601606 25.34108784689461 25.843871671138473 24.56689097936531 70-71 24.22965372616352 25.17819713404783 25.838064985637804 24.754084154150846 72-73 24.19370758618907 25.41656588315059 25.726867189647063 24.66285934101328 74-75 24.16272183238814 25.499832813613217 25.78299168984195 24.554453664156696 76-77 24.272499945517954 25.140855099545036 25.805814830976416 24.780830123960595 78-79 24.112005955509332 25.188362373073776 25.9320786529741 24.76755301844279 80-81 24.266331756375322 25.326779616505917 25.77141282611104 24.635475801007722 82-83 24.238612344357755 25.30613238150872 25.889303240608424 24.5659520335251 84-85 24.2209273058126 25.347722570200382 25.838487102333463 24.59286302165356 86-87 24.117482272829832 25.494991773376164 25.79595437709627 24.591571576697742 88-89 23.963974264361962 25.285766328336507 25.958222558662303 24.792036848639228 90-91 24.067317302567243 25.17612357645669 26.015270233185728 24.74128888779034 92-93 24.17925980667737 25.06837151257751 26.06119876256277 24.691169918182354 94-95 24.106597959003086 25.025551127228766 26.06666289727851 24.801188016489636 96-97 24.03228483023474 24.899978308930777 26.167137358220465 24.90059950261402 98-99 23.842882440704436 24.875945477615932 26.151413320285418 25.129758761394218 100-101 24.024522474392157 24.83323320374168 26.241694621183704 24.900549700682458 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 58.0 1 51.0 2 67.0 3 85.5 4 87.5 5 115.0 6 188.5 7 394.5 8 596.0 9 660.5 10 616.5 11 535.0 12 551.0 13 630.0 14 731.0 15 844.5 16 972.0 17 1068.5 18 1171.5 19 1340.0 20 1466.0 21 1557.0 22 1688.5 23 1817.5 24 2034.0 25 2396.5 26 2947.5 27 3903.5 28 5462.0 29 8006.0 30 12027.0 31 17646.5 32 25229.5 33 32353.5 34 38746.5 35 46638.0 36 57405.5 37 68941.0 38 79621.0 39 90078.5 40 99598.5 41 108338.0 42 117564.5 43 128088.5 44 138378.0 45 148664.0 46 157592.0 47 165498.0 48 173028.5 49 177181.0 50 177922.0 51 178658.0 52 178496.0 53 178016.0 54 176280.5 55 168665.5 56 157390.0 57 144000.0 58 129580.5 59 112661.0 60 93715.5 61 77473.0 62 63666.5 63 49400.0 64 36065.0 65 26610.0 66 20113.0 67 15308.0 68 11585.0 69 8897.5 70 6696.5 71 4801.5 72 3406.0 73 2510.0 74 1924.0 75 1439.5 76 1100.5 77 724.5 78 438.0 79 320.5 80 238.0 81 165.5 82 132.5 83 116.5 84 97.0 85 87.5 86 76.0 87 60.5 88 44.0 89 42.5 90 44.0 91 34.0 92 26.5 93 22.5 94 19.0 95 18.5 96 18.5 97 12.0 98 7.0 99 6.5 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.05098929604167768 2 0.05875403507183396 3 0.04990172673126492 4 0.05594658871239635 5 0.048687695873129724 6 0.018235755181572225 7 0.015150093417145303 8 0.020891447683742938 9 0.021119078469643286 10-11 0.022219293934828292 12-13 0.027720371260753343 14-15 0.04395803398831141 16-17 0.02985757141726215 18-19 0.023256278626152097 20-21 0.026658094259885058 22-23 0.04794157274156748 24-25 0.042389910796553465 26-27 0.029794340643400946 28-29 0.019070401396540163 30-31 0.012051785497946138 32-33 0.00918110836464732 34-35 0.008902892959658008 36-37 0.0013657847154020808 38-39 0.006487477398159884 40-41 0.0034397540980496844 42-43 0.22134564697854275 44-45 0.19556013739794237 46-47 0.20161764553384603 48-49 0.1995310299964262 50-51 0.1981652452810241 52-53 0.20304666102310934 54-55 0.20154176860521258 56-57 0.21170927704209477 58-59 0.20837069218222298 60-61 0.21268303095955732 62-63 0.2103814307910094 64-65 0.2119748462923118 66-67 0.20211084556996345 68-69 0.20082093778319485 70-71 0.18460856736518125 72-73 0.19238595255010976 74-75 0.19162718326377526 76-77 0.19012229084587853 78-79 0.21540195423558925 80-81 0.22343226251596263 82-83 0.22223087781259965 84-85 0.2175138620825536 86-87 0.23423207869145685 88-89 0.23273983242833232 90-91 0.23189254005859217 92-93 0.23593930958570944 94-95 0.24579066415328557 96-97 0.24663795652302575 98-99 0.23612900190729305 100-101 0.24572743337942438 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 3953771.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 54.495773361050105 #Duplication Level Percentage of deduplicated Percentage of total 1 75.00830497234416 40.876355879693946 2 12.963101629854886 14.128684969536623 3 4.703024010960299 7.68884791838608 4 2.202345981843872 4.8007418995673214 5 1.2871566819606581 3.5072299410144634 6 0.8444081958378908 2.761000659875695 7 0.5560913197479033 2.1213238570320287 8 0.4090367589817721 1.78326196110473 9 0.2970378172861289 1.4568575013437302 >10 1.6313027321112117 15.617186586057677 >50 0.07469729410838183 2.722932451564003 >100 0.022141537320192774 1.8768897493195096 >500 8.851822650630297E-4 0.3441703699057084 >1k 4.6588537763972155E-4 0.3145162555983819 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 5.058461908896595E-5 2 0.0 0.0 0.0 0.0 5.058461908896595E-5 3 0.0 0.0 0.0 0.0 5.058461908896595E-5 4 0.0 0.0 0.0 0.0 1.011692381779319E-4 5 0.0 2.5292309544482976E-5 0.0 0.0 1.011692381779319E-4 6 0.0 2.5292309544482976E-5 0.0 0.0 1.264615477224149E-4 7 0.0 2.5292309544482976E-5 0.0 0.0 1.264615477224149E-4 8 0.0 2.5292309544482976E-5 0.0 0.0 1.264615477224149E-4 9 0.0 2.5292309544482976E-5 0.0 0.0 1.5175385726689785E-4 10-11 0.0 2.5292309544482976E-5 0.0 0.0 1.5175385726689785E-4 12-13 0.0 3.793846431672446E-5 0.0 0.0 2.529230954448298E-4 14-15 0.0 7.587692863344892E-5 0.0 0.0 2.908615597615542E-4 16-17 0.0 1.011692381779319E-4 0.0 0.0 3.4144617885052014E-4 18-19 0.0 1.011692381779319E-4 0.0 0.0 3.5409233362276166E-4 20-21 0.0 1.011692381779319E-4 0.0 3.793846431672446E-5 3.920307979394861E-4 22-23 0.0 1.011692381779319E-4 0.0 1.1381539295017338E-4 4.6790772657293505E-4 24-25 0.0 1.011692381779319E-4 0.0 2.7821540498931276E-4 4.805538813451765E-4 26-27 0.0 1.011692381779319E-4 0.0 5.9436927429535E-4 4.805538813451765E-4 28-29 0.0 1.138153929501734E-4 0.0 0.0018716309062917402 4.805538813451765E-4 30-31 0.0 1.5175385726689785E-4 0.0 0.007246246684494372 4.805538813451765E-4 32-33 0.0 1.5175385726689785E-4 0.0 0.020550001504892418 5.311385004341425E-4 34-35 0.0 1.5175385726689785E-4 0.0 0.038026987400130156 5.817231195231085E-4 36-37 0.0 1.6440001203913934E-4 0.0 0.06789720497216455 5.943692742953499E-4 38-39 0.0 1.8969232158362232E-4 0.0 0.11550997768965375 6.070154290675914E-4 40-41 0.0 2.023384763558638E-4 0.0 0.17133010485432768 6.070154290675914E-4 42-43 0.0 2.023384763558638E-4 0.0 0.2305267553431901 6.070154290675914E-4 44-45 0.0 2.023384763558638E-4 0.0 0.30422854535581345 6.196615838398329E-4 46-47 0.0 2.023384763558638E-4 0.0 0.3939783057744113 6.702462029287989E-4 48-49 0.0 2.023384763558638E-4 0.0 0.4878507126487599 6.828923577010404E-4 50-51 1.2646154772241488E-5 2.023384763558638E-4 0.0 0.5881473661474071 7.081846672455233E-4 52-53 2.5292309544482976E-5 2.023384763558638E-4 0.0 0.6941727277578797 7.587692863344893E-4 54-55 2.5292309544482976E-5 2.276307859003468E-4 0.0 0.8195340600151095 8.346462149679382E-4 56-57 2.5292309544482976E-5 2.276307859003468E-4 0.0 0.9610824703808086 8.599385245124211E-4 58-59 2.5292309544482976E-5 2.7821540498931276E-4 0.0 1.1158208201739555 8.852308340569041E-4 60-61 2.5292309544482976E-5 3.035077145337957E-4 0.0 1.280751970713529 9.105231436013872E-4 62-63 2.5292309544482976E-5 3.161538693060372E-4 0.0 1.451993552484451 9.358154531458701E-4 64-65 2.5292309544482976E-5 3.288000240782787E-4 0.0 1.6397510123879204 9.737539174625946E-4 66-67 2.5292309544482976E-5 3.288000240782787E-4 0.0 1.8621209979030147 9.86400072234836E-4 68-69 2.5292309544482976E-5 3.288000240782787E-4 0.0 2.1077219697347163 9.86400072234836E-4 70-71 2.5292309544482976E-5 3.5409233362276166E-4 0.0 2.3663611271365994 0.0010116923817793191 72-73 2.5292309544482976E-5 3.7938464316724464E-4 0.0 2.641528808825802 0.0011002154651850093 74-75 2.5292309544482976E-5 3.7938464316724464E-4 0.0 2.9322006762657726 0.001163446239046217 76-77 2.5292309544482976E-5 3.7938464316724464E-4 0.0 3.2633149466673714 0.0011887385485907 78-79 2.5292309544482976E-5 4.046769527117276E-4 0.0 3.634036973815631 0.0012266770129074243 80-81 2.5292309544482976E-5 4.046769527117276E-4 0.0 4.023108571538413 0.0012646154772241488 82-83 2.5292309544482976E-5 4.046769527117276E-4 0.0 4.4278487550240015 0.0013278462510853562 84-85 2.5292309544482976E-5 4.1732310748396914E-4 0.0 4.858526201947457 0.0013404924058575977 86-87 2.5292309544482976E-5 4.552615718006936E-4 0.0 5.3210593127421895 0.0013784308701743223 88-89 2.5292309544482976E-5 4.552615718006936E-4 0.0 5.8272469498107 0.0014290154892632881 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 3130 0.0 48.821545 1 GTATCAA 5655 0.0 42.0441 1 TCAACGC 6625 0.0 34.60013 4 CAACGCA 6740 0.0 33.938927 5 ATCAACG 7030 0.0 32.67349 3 TATCAAC 7220 0.0 32.143536 2 AACGCAG 7245 0.0 31.693453 6 GTACATG 11735 0.0 28.672337 1 TACATGG 12225 0.0 26.74806 2 ACGCAGA 8805 0.0 25.327454 7 ACATGGG 12665 0.0 25.14333 3 CGCAGAG 9025 0.0 23.975222 8 CATGGGG 11405 0.0 23.55253 4 GCAGAGT 10805 0.0 19.103107 9 ATGGGGG 7210 0.0 19.088583 5 GAGTACA 8640 0.0 18.345634 1 GTATATA 1075 0.0 17.658405 1 AGAGTAC 8845 0.0 17.274403 10-11 GTATAGA 1105 0.0 17.178993 1 TAGACAG 2055 0.0 16.85862 5 >>END_MODULE