##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921402_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2215162 Sequences flagged as poor quality 0 Sequence length 101 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.265430248442325 31.0 31.0 34.0 26.0 34.0 2 30.32404447169101 31.0 31.0 34.0 26.0 34.0 3 30.371663110869545 33.0 31.0 34.0 26.0 34.0 4 33.829147033038666 37.0 35.0 37.0 29.0 37.0 5 33.82644610191038 37.0 35.0 37.0 30.0 37.0 6 33.86852203134579 37.0 35.0 37.0 30.0 37.0 7 33.78902626534764 37.0 35.0 37.0 29.0 37.0 8 33.75421255872031 37.0 35.0 37.0 29.0 37.0 9 35.294234010875954 39.0 35.0 39.0 29.0 39.0 10-11 35.18627982964677 39.0 35.0 39.0 28.5 39.0 12-13 35.068213069743884 39.0 35.0 39.0 27.0 39.0 14-15 36.18585480429874 40.0 36.0 41.0 27.0 41.0 16-17 36.13494678944475 40.0 36.0 41.0 27.0 41.0 18-19 36.094248637345714 40.0 36.0 41.0 27.0 41.0 20-21 36.03909465763678 40.0 36.0 41.0 27.0 41.0 22-23 35.923594527172284 40.0 36.0 41.0 27.0 41.0 24-25 35.828190218142055 40.0 36.0 41.0 27.0 41.0 26-27 35.680187724419255 40.0 36.0 41.0 26.5 41.0 28-29 35.53823151534741 40.0 36.0 41.0 25.5 41.0 30-31 35.38827792278849 40.0 35.5 41.0 25.0 41.0 32-33 35.20543147634349 39.0 35.0 41.0 24.5 41.0 34-35 35.043842843096805 39.0 35.0 41.0 24.0 41.0 36-37 34.87766470352959 39.0 35.0 41.0 24.0 41.0 38-39 35.09964914529954 39.0 35.0 41.0 24.0 41.0 40-41 35.21960380324329 40.0 35.0 41.0 24.0 41.0 42-43 35.05269321160259 40.0 35.0 41.0 23.0 41.0 44-45 34.929246935438584 40.0 35.0 41.0 22.5 41.0 46-47 34.77225525717758 40.0 35.0 41.0 21.5 41.0 48-49 34.61984134794656 39.0 35.0 41.0 19.5 41.0 50-51 32.9163332072327 37.0 32.5 39.5 15.5 40.0 52-53 33.071781657504054 37.5 32.5 39.5 14.5 40.0 54-55 33.936021609254766 39.0 34.0 40.5 14.5 41.0 56-57 33.96369610890761 39.0 34.0 41.0 13.5 41.0 58-59 33.79314628004634 38.0 34.0 41.0 13.0 41.0 60-61 33.55722290288475 38.0 34.0 40.0 9.5 41.0 62-63 33.27611366572738 37.5 33.5 40.0 8.0 41.0 64-65 32.99384898260263 37.0 33.0 40.0 7.0 41.0 66-67 32.663185581912295 36.5 33.0 39.5 2.0 41.0 68-69 32.30993241126383 36.0 33.0 39.0 2.0 41.0 70-71 31.93201851602727 35.0 32.0 39.0 2.0 41.0 72-73 31.58145092774253 35.0 32.0 38.0 2.0 40.0 74-75 31.189339876722336 35.0 32.0 37.0 2.0 39.5 76-77 30.81051363286297 35.0 31.5 37.0 2.0 39.0 78-79 30.468410436798756 35.0 31.0 36.0 2.0 39.0 80-81 30.118592455089065 35.0 31.0 36.0 2.0 37.0 82-83 29.81954750939209 35.0 31.0 35.0 2.0 37.0 84-85 29.581894913329137 35.0 31.0 35.0 2.0 36.5 86-87 29.355846660424838 35.0 31.0 35.0 2.0 36.0 88-89 29.158732408735794 35.0 30.5 35.0 2.0 36.0 90-91 28.912082502318114 34.5 30.0 35.0 2.0 36.0 92-93 28.725922979899437 34.0 30.0 35.0 2.0 35.0 94-95 28.527432756611027 34.0 30.0 35.0 2.0 35.0 96-97 28.28698442822692 34.0 30.0 35.0 2.0 35.0 98-99 28.07160943533701 34.0 29.5 35.0 2.0 35.0 100-101 27.045930952228325 33.0 27.0 35.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 82380.0 3 13818.0 4 9343.0 5 6946.0 6 6270.0 7 6562.0 8 6894.0 9 7247.0 10 7967.0 11 8420.0 12 8592.0 13 8819.0 14 9435.0 15 10311.0 16 10621.0 17 11493.0 18 10323.0 19 9316.0 20 9253.0 21 9664.0 22 10896.0 23 12281.0 24 14336.0 25 16585.0 26 19573.0 27 23313.0 28 27448.0 29 33047.0 30 39110.0 31 47531.0 32 59220.0 33 76485.0 34 108047.0 35 154392.0 36 252622.0 37 460909.0 38 507345.0 39 98328.0 40 20.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.08818348524404 18.959178327205716 13.663110541006857 24.28952764654339 2 15.652158594447316 19.677005828765118 40.09651972493143 24.574315851856134 3 19.130294179152408 24.174242872479912 29.562130006472277 27.133332941895404 4 13.219461627583964 15.851564776107269 37.045162485122376 33.88381111118639 5 14.045478955357963 37.61324686246516 34.39836609262813 13.942908089548748 6 33.11151827874648 35.47015068914979 17.34957047225927 14.068760559844462 7 28.62404151656089 32.22405181081863 21.088464245740187 18.063442426880293 8 26.655510874188487 35.04059703056043 19.87132308120219 18.432569014048894 9 26.965576282773153 15.84105975814266 19.441060480590096 37.75230347849409 10-11 25.611326831688956 25.45238670944504 27.880242230164715 21.05604422870129 12-13 26.083667016248203 22.891916086884372 27.831288714085577 23.193128182781848 14-15 23.278708514832704 24.49285180392874 25.103209066952097 27.125230614286455 16-17 23.39110844585655 27.66122557355907 25.9107448794449 23.036921101139487 18-19 23.41272887363692 26.990743458334276 27.280224866231684 22.316302801797125 20-21 23.807118724582917 26.15738880153747 27.352414978365847 22.68307749551377 22-23 23.726765834934987 25.906665664008948 27.051434308643792 23.315134192412273 24-25 23.516523219670923 26.113743701259917 26.9324698287104 23.437263250358757 26-27 23.30750113626896 26.3435801876238 26.968330552776504 23.380588123330735 28-29 23.390678766988138 26.641718295016 26.76193735785366 23.205665580142202 30-31 23.855983110696542 26.203432852061027 26.692440673206335 23.248143364036096 32-33 23.501616737864534 26.285444302680776 26.602087447414256 23.610851512040433 34-35 23.815202733055315 26.400647958402807 26.672459104172226 23.111690204369655 36-37 23.74489477606988 26.28785720767105 26.728146797506064 23.239101218753007 38-39 23.689820547976744 26.42509935571717 26.62162119456204 23.26345890174405 40-41 23.815375447498745 26.166318298579288 26.688035249132092 23.330271004789875 42-43 23.55812958743534 26.247419364397395 26.433761216872465 23.7606898312948 44-45 23.519470865896714 26.297479182011287 26.63535667094903 23.547693281142973 46-47 23.71322988965857 26.253231201362365 26.380421237841293 23.653117671137768 48-49 23.490980916115127 26.416930847433402 26.386197076967406 23.70589115948407 50-51 23.587056616335406 26.40319645112151 26.533977218863185 23.4757697136799 52-53 23.831516042165767 26.213500672027962 26.446103990532126 23.508879295274138 54-55 23.285421771159797 26.155253182105398 26.80892984193165 23.75039520480316 56-57 23.406059945341386 26.320884471647343 26.516643102499494 23.75641248051178 58-59 23.582206553147294 26.25033699367266 26.6064872865179 23.560969166662144 60-61 23.607940794622298 26.271187590755492 26.769715146498026 23.35115646812418 62-63 23.678094834424147 26.152940056231987 26.753528974445906 23.415436134897963 64-65 23.304852145792136 26.05066269255449 26.791194678646303 23.853290483007076 66-67 23.385088363644257 26.174292041482428 26.616856577338087 23.823763017535228 68-69 23.449835530965295 26.107144028287088 26.735733484402864 23.70728695634475 70-71 23.40536472903659 25.99307724381325 26.661520274884253 23.940037752265905 72-73 23.328359957252182 26.293503661288213 26.515157339739776 23.862979041719825 74-75 23.304215096558274 26.311654832436343 26.62889512007598 23.755234950929403 76-77 23.35831207927652 25.93104979701707 26.657867310013156 24.052770813693257 78-79 23.337559246664036 26.010289213064063 26.69280625902625 23.959345281245653 80-81 23.528616055574027 26.20823974104059 26.42600723403389 23.837136969351494 82-83 23.511334206926723 26.126233113713493 26.62059830063239 23.74183437872739 84-85 23.400150190905308 26.24316902810199 26.522424587879772 23.83425619311293 86-87 23.24362319115993 26.350629242420542 26.508041652074688 23.897705914344844 88-89 23.203634469912057 26.09845573034847 26.629002914254148 24.06890688548533 90-91 23.342196848769152 25.992044101305595 26.703772174624373 23.96198687530088 92-93 23.531703379502364 25.826663773891134 26.786075855723503 23.855556990883006 94-95 23.39426718172297 25.844269003109027 26.792159034832817 23.969304780335186 96-97 23.28232875553144 25.654326708349416 26.900894940736254 24.16244959538289 98-99 23.071368117991923 25.59122766176029 26.8555464080882 24.481857812159586 100-101 23.3058175851605 25.591523725658245 26.93801852222241 24.16464016695884 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 75.0 1 62.5 2 76.0 3 102.0 4 99.0 5 116.5 6 177.0 7 358.0 8 545.5 9 615.0 10 577.0 11 517.5 12 539.0 13 598.0 14 652.5 15 736.5 16 846.5 17 941.5 18 1035.5 19 1151.5 20 1317.5 21 1488.5 22 1634.0 23 1894.0 24 2267.5 25 2784.0 26 3581.5 27 4955.5 28 6845.5 29 9241.0 30 12705.0 31 17419.0 32 23214.0 33 28194.0 34 32595.0 35 37803.5 36 44414.0 37 50861.5 38 56313.0 39 61617.0 40 65884.5 41 69657.5 42 73297.5 43 77387.0 44 81836.0 45 86443.0 46 89499.0 47 91681.0 48 93852.5 49 94476.5 50 93723.0 51 92403.5 52 90662.0 53 88581.0 54 86623.5 55 82656.0 56 76429.0 57 68721.0 58 61139.0 59 52477.0 60 42633.0 61 35076.0 62 28557.5 63 21577.0 64 15413.5 65 11110.0 66 8244.5 67 6232.0 68 4669.0 69 3540.5 70 2646.0 71 1918.5 72 1373.5 73 995.0 74 759.5 75 552.0 76 379.5 77 250.0 78 182.5 79 135.0 80 85.5 81 64.0 82 62.5 83 53.5 84 37.0 85 37.0 86 37.0 87 30.0 88 22.0 89 18.5 90 19.0 91 17.0 92 11.5 93 11.0 94 8.5 95 10.0 96 10.5 97 5.5 98 6.0 99 5.5 100 4.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.05155379155113712 2 0.05931846068143097 3 0.04979319796926816 4 0.057196719698153 5 0.04889032946574562 6 0.018237943771155337 7 0.01512304743400257 8 0.02112712298242747 9 0.02112712298242747 10-11 0.022187993474066456 12-13 0.02751491764484945 14-15 0.04365369214531488 16-17 0.02961408691553936 18-19 0.02311343369017706 20-21 0.027447202507085263 22-23 0.04724259444681698 24-25 0.04196081370121011 26-27 0.03058467055682609 28-29 0.02054025845513782 30-31 0.012143581372378183 32-33 0.009389832436634432 34-35 0.00925440216110605 36-37 0.0013091593301076852 38-39 0.0063652229498339175 40-41 0.0032503266126811497 42-43 0.2125578174417943 44-45 0.1875032164690438 46-47 0.19398129798181804 48-49 0.19136297932160268 50-51 0.19005381999149498 52-53 0.1948615947727525 54-55 0.19334929002935228 56-57 0.20456743118561985 58-59 0.20034652093165198 60-61 0.20549287140173042 62-63 0.20307769815480764 64-65 0.20411599693385857 66-67 0.19402644140699415 68-69 0.19228841953771328 70-71 0.1762399318876001 72-73 0.18305658908919528 74-75 0.18337259306542816 76-77 0.18127342379473826 78-79 0.2074114669717158 80-81 0.21565014206635902 82-83 0.2144989847243678 84-85 0.20955577966758188 86-87 0.22770343658838496 88-89 0.22531083505405022 90-91 0.22472397052676057 92-93 0.22835801625343882 94-95 0.23955358569711832 96-97 0.23903443630759286 98-99 0.22926088475696133 100-101 0.23817671122924644 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 2215162.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 63.00174612517239 #Duplication Level Percentage of deduplicated Percentage of total 1 80.17268409229385 50.51019089356345 2 11.205737782767233 14.119620938703067 3 3.536739421899925 6.684622775082842 4 1.63086245749158 4.10988730047837 5 0.903692037418659 2.846708815839507 6 0.5796681853169086 2.1912064708905152 7 0.3951825196229849 1.7428032142075274 8 0.2696443185348038 1.3590450320339857 9 0.2137775751098137 1.2121524462891111 >10 1.034424317043235 11.209654299637185 >50 0.0438411839067483 1.8461101624814038 >100 0.0120929876926065 1.3346657767941474 >500 0.001437496436115656 0.64658728624849 >1k 2.1562446541723173E-4 0.18674458775038416 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 4.514342517612707E-5 4.514342517612707E-5 2 0.0 0.0 0.0 9.028685035225414E-5 4.514342517612707E-5 3 0.0 0.0 0.0 9.028685035225414E-5 4.514342517612707E-5 4 0.0 0.0 0.0 9.028685035225414E-5 4.514342517612707E-5 5 0.0 0.0 0.0 9.028685035225414E-5 4.514342517612707E-5 6 0.0 0.0 0.0 9.028685035225414E-5 9.028685035225414E-5 7 0.0 0.0 0.0 9.028685035225414E-5 9.028685035225414E-5 8 0.0 0.0 0.0 9.028685035225414E-5 9.028685035225414E-5 9 0.0 0.0 0.0 9.028685035225414E-5 9.028685035225414E-5 10-11 0.0 0.0 0.0 9.028685035225414E-5 9.028685035225414E-5 12-13 0.0 0.0 0.0 9.028685035225414E-5 1.3543027552838122E-4 14-15 0.0 0.0 0.0 9.028685035225414E-5 1.3543027552838122E-4 16-17 0.0 0.0 0.0 9.028685035225414E-5 1.3543027552838122E-4 18-19 0.0 0.0 0.0 9.028685035225414E-5 1.8057370070450829E-4 20-21 0.0 0.0 0.0 1.1285856294031768E-4 1.8057370070450829E-4 22-23 0.0 0.0 0.0 1.3543027552838122E-4 2.482888384686989E-4 24-25 0.0 0.0 0.0 2.7086055105676244E-4 2.7086055105676244E-4 26-27 0.0 0.0 0.0 6.997230902299696E-4 3.1600397623288953E-4 28-29 0.0 0.0 0.0 0.0024377449595108618 3.1600397623288953E-4 30-31 0.0 0.0 0.0 0.008441820507935762 3.3857568882095305E-4 32-33 0.0 0.0 0.0 0.023000575127236744 3.6114740140901657E-4 34-35 0.0 0.0 0.0 0.041622238012389165 4.5143425176127075E-4 36-37 0.0 0.0 0.0 0.07631496026024281 4.5143425176127075E-4 38-39 0.0 0.0 0.0 0.12856847490160989 4.5143425176127075E-4 40-41 0.0 0.0 0.0 0.18831579812221408 4.5143425176127075E-4 42-43 0.0 0.0 0.0 0.24971085636174692 4.5143425176127075E-4 44-45 0.0 0.0 0.0 0.32564209750799267 4.7400596434933433E-4 46-47 0.0 0.0 0.0 0.4152743681951929 5.417211021135249E-4 48-49 0.0 0.0 0.0 0.5099401307895315 6.320079524657791E-4 50-51 0.0 0.0 0.0 0.6135668632813311 6.545796650538426E-4 52-53 0.0 0.0 0.0 0.7191799064808804 7.674382279941603E-4 54-55 0.0 0.0 0.0 0.8446786284705137 9.028685035225415E-4 56-57 0.0 0.0 0.0 0.986948132913078 9.028685035225415E-4 58-59 0.0 0.0 0.0 1.1367340176474676 9.028685035225415E-4 60-61 0.0 0.0 0.0 1.3023426729060898 9.028685035225415E-4 62-63 0.0 0.0 0.0 1.4765060072355882 9.028685035225415E-4 64-65 0.0 0.0 0.0 1.6598786003010164 9.028685035225415E-4 66-67 0.0 0.0 0.0 1.8768830451226592 9.480119286986687E-4 68-69 0.0 0.0 0.0 2.109981121019591 9.931553538747957E-4 70-71 0.0 0.0 0.0 2.363619455371661 0.0010382987790509227 72-73 0.0 0.0 0.0 2.6285662177303513 0.0011511573419912403 74-75 0.0 0.0 0.0 2.9087488860859834 0.0011737290545793038 76-77 0.0 0.0 0.0 3.2234662747013534 0.0011737290545793038 78-79 0.0 0.0 0.0 3.579061034813707 0.0011737290545793038 80-81 0.0 0.0 0.0 3.9533903163741524 0.0011963007671673674 82-83 0.0 0.0 0.0 4.33947946019298 0.0012188724797554309 84-85 0.0 0.0 0.0 4.752022651165016 0.0012188724797554309 86-87 0.0 0.0 0.0 5.194428217891062 0.0012188724797554309 88-89 0.0 0.0 0.0 5.67281309448248 0.0012188724797554309 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 1985 0.0 53.55601 1 GTATCAA 3995 0.0 43.95473 1 TCAACGC 4850 0.0 35.522636 4 ATCAACG 5040 0.0 33.99592 3 CAACGCA 5065 0.0 33.917995 5 TATCAAC 5075 0.0 33.668705 2 AACGCAG 5385 0.0 32.33432 6 GTACATG 6910 0.0 26.717283 1 ACGCAGA 6380 0.0 26.62592 7 CGCAGAG 6470 0.0 25.890013 8 ACATGGG 7170 0.0 24.823456 3 TACATGG 7330 0.0 24.735422 2 CATGGGG 5770 0.0 23.278282 4 GCAGAGT 7250 0.0 21.730108 9 GAGTACA 5315 0.0 20.269512 1 GTATATA 830 0.0 20.012928 1 AGAGTAC 6075 0.0 19.254728 10-11 ATGGGGG 4025 0.0 19.100742 5 GTATAAA 935 0.0 18.780659 1 AGTACAT 5410 0.0 18.687117 2 >>END_MODULE