##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921400_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2175728 Sequences flagged as poor quality 0 Sequence length 101 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.484356040828633 31.0 31.0 34.0 26.0 34.0 2 30.556543373068692 33.0 31.0 34.0 26.0 34.0 3 30.598220457704272 33.0 31.0 34.0 26.0 34.0 4 34.052427968937295 37.0 35.0 37.0 30.0 37.0 5 34.04191378701749 37.0 35.0 37.0 30.0 37.0 6 34.0883189442798 37.0 35.0 37.0 30.0 37.0 7 34.00565144172433 37.0 35.0 37.0 30.0 37.0 8 33.97102624960473 37.0 35.0 37.0 30.0 37.0 9 35.54216427788768 39.0 37.0 39.0 30.0 39.0 10-11 35.442902789319255 39.0 37.0 39.0 30.0 39.0 12-13 35.339755245140935 39.0 37.0 39.0 29.0 39.0 14-15 36.50193567394454 40.0 37.0 41.0 29.0 41.0 16-17 36.452381685578345 40.0 37.0 41.0 29.0 41.0 18-19 36.40535236941382 40.0 37.0 41.0 28.5 41.0 20-21 36.34394143017877 40.0 37.0 41.0 28.0 41.0 22-23 36.227411238904864 40.0 37.0 41.0 27.0 41.0 24-25 36.1311099089592 40.0 36.5 41.0 27.0 41.0 26-27 35.9895168421788 40.0 36.0 41.0 27.0 41.0 28-29 35.85691226109146 40.0 36.0 41.0 27.0 41.0 30-31 35.71370754984079 40.0 36.0 41.0 26.5 41.0 32-33 35.54288794371355 40.0 35.5 41.0 25.5 41.0 34-35 35.3857605362435 39.5 35.0 41.0 25.0 41.0 36-37 35.21179554613444 39.0 35.0 41.0 25.0 41.0 38-39 35.44023862357795 39.5 35.5 41.0 25.5 41.0 40-41 35.56345600185317 40.0 36.0 41.0 25.0 41.0 42-43 35.398434684850315 40.0 35.0 41.0 24.5 41.0 44-45 35.276925700271356 40.0 35.0 41.0 24.0 41.0 46-47 35.12536976129369 40.0 35.0 41.0 23.5 41.0 48-49 34.98421401939948 40.0 35.0 41.0 23.0 41.0 50-51 33.26399301750954 37.0 32.5 39.5 18.5 40.0 52-53 33.4223558735283 37.5 33.5 39.5 19.5 40.0 54-55 34.28794040431524 39.0 34.0 40.5 20.5 41.0 56-57 34.2988588187494 39.0 34.0 41.0 20.0 41.0 58-59 34.12105074715222 38.5 34.0 41.0 20.0 41.0 60-61 33.877349328592544 38.0 34.0 40.5 18.5 41.0 62-63 33.598172427803476 37.5 34.0 40.0 17.5 41.0 64-65 33.30347704308627 37.0 34.0 40.0 15.0 41.0 66-67 32.961701554606094 36.5 33.0 39.5 13.0 41.0 68-69 32.59528442893597 36.0 33.0 39.0 9.5 41.0 70-71 32.21269409595317 35.0 33.0 39.0 7.5 40.5 72-73 31.854630266283287 35.0 32.5 37.5 4.0 40.0 74-75 31.450927000066187 35.0 32.0 37.0 2.0 39.0 76-77 31.074208954428126 35.0 32.0 36.5 2.0 39.0 78-79 30.731160788480913 35.0 32.0 36.0 2.0 38.5 80-81 30.383936319245787 35.0 31.5 36.0 2.0 37.0 82-83 30.09556617371289 35.0 31.0 35.0 2.0 37.0 84-85 29.865728620489328 35.0 31.0 35.0 2.0 36.5 86-87 29.647234167138542 35.0 31.0 35.0 2.0 36.0 88-89 29.45322462182773 35.0 31.0 35.0 2.0 36.0 90-91 29.20905761198091 35.0 31.0 35.0 2.0 35.5 92-93 29.028854250163622 34.5 30.5 35.0 2.0 35.0 94-95 28.837728796981978 34.0 30.0 35.0 2.0 35.0 96-97 28.600209676944914 34.0 30.0 35.0 2.0 35.0 98-99 28.381362008486356 34.0 30.0 35.0 2.0 35.0 100-101 27.343632338233455 33.5 27.5 35.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 73068.0 3 12464.0 4 8550.0 5 6536.0 6 5842.0 7 5992.0 8 6383.0 9 6856.0 10 7308.0 11 7955.0 12 7794.0 13 8049.0 14 8622.0 15 9421.0 16 9662.0 17 10153.0 18 9469.0 19 8659.0 20 8494.0 21 9059.0 22 10022.0 23 11273.0 24 13526.0 25 15881.0 26 18665.0 27 22002.0 28 25858.0 29 31057.0 30 37264.0 31 45078.0 32 56751.0 33 73473.0 34 101957.0 35 151341.0 36 256175.0 37 470761.0 38 513410.0 39 90888.0 40 10.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.43449278641213 18.926988576531535 13.656567551684272 24.981951085372057 2 16.28043550742133 19.750146587107235 38.61198680141184 25.357431104059604 3 19.509441684121462 23.058907923749175 29.156168881183998 28.275481510945365 4 13.898529563927756 15.752681620123935 35.626907025672274 34.721881790276036 5 14.98872018989443 36.17255304453709 34.003132412003225 14.835594353565257 6 34.08835880450597 34.41479128502047 16.85294448900974 14.64390542146382 7 29.338380061073742 31.104673478891037 20.76994469530473 18.787001764730487 8 26.738799338559087 34.14649619745032 19.917103819283383 19.197600644707208 9 26.467280972100653 15.809599641052422 19.45355196281068 38.26956742403625 10-11 25.757195097479666 25.061849255383926 27.657920462880448 21.52303518425596 12-13 26.227651120012833 22.542801303291007 27.353134946340617 23.87641263035554 14-15 23.524836509342258 24.26439550070767 24.56930523252873 27.641462757421344 16-17 23.76403750506881 27.136096100072365 25.568902276988375 23.530964117870447 18-19 23.701288252909855 26.530691055602396 26.78770261411166 22.980318077376086 20-21 24.236188453320555 25.66838035931227 26.767419381162718 23.32801180620446 22-23 24.11530051755098 25.522528757302847 26.42273637548772 23.939434349658452 24-25 23.917949566848755 25.808158141588038 26.399027938715076 23.874864352848128 26-27 23.73938114677408 25.939978565743903 26.488869313106118 23.831770974375903 28-29 23.852316467864036 26.082818110646343 26.429510226992196 23.635355194497425 30-31 24.051273258491836 25.80273342152997 26.257054888156063 23.888938431822133 32-33 23.82184934362427 25.848411427772927 26.164613582029382 24.16512564657342 34-35 24.113039641097302 25.86793042582923 26.15365521806281 23.865374715010663 36-37 24.10628906376576 25.800855315062194 26.223089278134587 23.869766343037462 38-39 23.937274470386775 25.866834653023673 26.29968603680822 23.896204839781326 40-41 24.055731659587906 25.732525999826716 26.365098629621315 23.846643710964063 42-43 24.03931304206232 25.668312732748376 26.147231133519288 24.14514309167001 44-45 23.99839925323045 25.77722679832456 26.163851352518197 24.060522595926802 46-47 24.099581576662242 25.811269452333107 26.025927003077097 24.063221967927557 48-49 23.848771581683135 25.923786186110952 26.05330909738995 24.174133134815968 50-51 23.885105979289527 25.92854491582169 26.18102458159526 24.005324523293524 52-53 24.07626333777139 25.798262940787183 26.132544829971476 23.99292889146995 54-55 23.82403728872024 25.692065485528676 26.218481744678098 24.265415481072985 56-57 23.85016250488505 25.891416384425785 26.11134434477703 24.147076765912136 58-59 23.816558440810766 25.740075560822405 26.249072530744076 24.194293467622746 60-61 23.77944726402463 25.68364264273808 26.4105231983205 24.126386894916788 62-63 23.828332889260523 25.735028777990692 26.35860372454651 24.078034608202277 64-65 23.728395522310723 25.633571293193125 26.247734798537834 24.39029838595832 66-67 23.698961564030053 25.72980309161342 26.178064240402637 24.393171103953897 68-69 23.775765658805987 25.632242453939813 26.252557108369817 24.339434778884385 70-71 23.651401746513763 25.532276891269962 26.322329176173188 24.493992186043084 72-73 23.76185670667618 25.5390877315133 26.23654309697167 24.462512464838852 74-75 23.757081496643593 25.692665635933075 26.198147212241707 24.352105655181624 76-77 23.753863722965452 25.50000748281543 26.280384547640782 24.46574424657834 78-79 23.657820288541348 25.520944166392606 26.326311871907613 24.494923673158432 80-81 23.77050822793571 25.583309706055164 26.249633498881668 24.396548567127457 82-83 23.711622996422268 25.60039964457612 26.325987630180443 24.36198972882116 84-85 23.724919035715487 25.57955503844048 26.325402955939126 24.370122969904916 86-87 23.697341404008096 25.568917613423032 26.299802317915727 24.433938664653144 88-89 23.58735817147448 25.43600653623978 26.364338703264938 24.612296589020794 90-91 23.582649179729735 25.41135594399377 26.43075671434896 24.575238161927537 92-93 23.644745907637915 25.338886947540047 26.59303413321257 24.423333011609472 94-95 23.62125126103136 25.19599980924705 26.56962839804612 24.613120531675474 96-97 23.66010912646303 25.052872241313057 26.649291396776338 24.637727235447578 98-99 23.500537644811658 25.11883931376804 26.56875265482282 24.811870386597487 100-101 23.714916292110242 24.931174536767195 26.72455300885343 24.629356162269133 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 47.0 1 37.0 2 47.0 3 77.0 4 81.0 5 95.5 6 141.0 7 273.0 8 413.5 9 479.5 10 465.5 11 410.5 12 436.5 13 481.5 14 539.5 15 608.5 16 703.0 17 821.5 18 906.5 19 988.5 20 1071.0 21 1178.5 22 1313.5 23 1493.5 24 1671.0 25 1934.5 26 2414.0 27 3099.0 28 4052.5 29 5406.5 30 7383.5 31 10482.0 32 14980.5 33 19398.0 34 23582.5 35 28774.5 36 35673.5 37 42661.5 38 49082.5 39 55252.0 40 60732.0 41 65753.5 42 71354.0 43 77125.0 44 82340.5 45 88107.5 46 91917.0 47 94225.0 48 97042.5 49 98334.5 50 97467.0 51 95855.0 52 94326.0 53 92397.5 54 89825.5 55 84843.5 56 77789.0 57 70140.0 58 63293.5 59 55962.5 60 46306.5 61 37791.5 62 30882.0 63 23595.5 64 17147.0 65 12636.5 66 9436.5 67 7378.0 68 5746.5 69 4399.5 70 3313.5 71 2398.5 72 1766.5 73 1328.0 74 961.0 75 734.0 76 565.0 77 387.0 78 261.0 79 193.0 80 150.0 81 112.5 82 78.5 83 61.0 84 49.0 85 39.0 86 38.5 87 33.5 88 26.5 89 24.5 90 25.0 91 22.5 92 16.0 93 10.0 94 10.5 95 13.0 96 9.0 97 4.5 98 2.5 99 3.5 100 4.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.04973048101600936 2 0.057589919328151315 3 0.04885721009243802 4 0.055291837950332025 5 0.04807586242397947 6 0.01806291962965959 7 0.01493752895582536 8 0.02192369634439599 9 0.022061581227065148 10-11 0.022038600413286955 12-13 0.028450247457402766 14-15 0.045318164770596324 16-17 0.030426597442327348 18-19 0.024543509115109975 20-21 0.027599957347609626 22-23 0.04885721009243802 24-25 0.044490855474581384 26-27 0.03240294742725194 28-29 0.020912540538155503 30-31 0.013145025481126317 32-33 0.010157519689961245 34-35 0.009560018531728231 36-37 0.0017695226609208505 38-39 0.007101071457461595 40-41 0.004067604038740137 42-43 0.22036302331909136 44-45 0.19494624328041005 46-47 0.2005076002147327 48-49 0.19752009442356766 50-51 0.1960723031555415 52-53 0.20025481126317257 54-55 0.19981817580138694 56-57 0.20969992572600987 58-59 0.2066894391210666 60-61 0.21146944838693074 62-63 0.2085508850371002 64-65 0.20974588735356625 66-67 0.19935855952582307 68-69 0.19901384731915017 70-71 0.18260554628152048 72-73 0.18933892471853098 74-75 0.19007431075943315 76-77 0.18777622938161387 78-79 0.21464080068832134 80-81 0.2234424523653692 82-83 0.2205698506430951 84-85 0.21643330416302037 86-87 0.23307141333843204 88-89 0.23261179706286816 90-91 0.23169256451174045 92-93 0.23576016855048057 94-95 0.24734249869468977 96-97 0.24828471205959568 98-99 0.23670238191538648 100-101 0.24741144113602434 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 2175728.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 66.60282441480516 #Duplication Level Percentage of deduplicated Percentage of total 1 81.40631340038456 54.218903976624134 2 10.807096774419321 14.395663378009147 3 3.2983253589488033 6.59033354234899 4 1.4850962754195478 3.9564642588339707 5 0.810216521658318 2.6981354364991565 6 0.5271912406141945 2.1067455378990303 7 0.34713011807939703 1.6183892412472867 8 0.24817177964945902 1.322315317176211 9 0.18964862274193175 1.1368020528891454 >10 0.8449812534528983 9.348169601369417 >50 0.026471281288769532 1.165704592005294 >100 0.00852679574497489 1.0191841386786533 >500 6.921479981904678E-4 0.314210863014729 >1k 1.3842959963806224E-4 0.10897806340473663 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 9.192325511277145E-5 2 0.0 0.0 0.0 4.5961627556385725E-5 9.192325511277145E-5 3 0.0 0.0 0.0 4.5961627556385725E-5 9.192325511277145E-5 4 0.0 0.0 0.0 4.5961627556385725E-5 9.192325511277145E-5 5 0.0 0.0 0.0 4.5961627556385725E-5 9.192325511277145E-5 6 0.0 0.0 0.0 4.5961627556385725E-5 1.838465102255429E-4 7 0.0 0.0 0.0 4.5961627556385725E-5 1.838465102255429E-4 8 0.0 0.0 0.0 4.5961627556385725E-5 1.838465102255429E-4 9 0.0 0.0 0.0 4.5961627556385725E-5 1.838465102255429E-4 10-11 0.0 0.0 0.0 4.5961627556385725E-5 1.838465102255429E-4 12-13 0.0 0.0 0.0 4.5961627556385725E-5 4.1365464800747153E-4 14-15 0.0 0.0 0.0 4.5961627556385725E-5 6.204819720112073E-4 16-17 0.0 0.0 0.0 4.5961627556385725E-5 7.583668546803645E-4 18-19 0.0 0.0 0.0 4.5961627556385725E-5 8.732709235713288E-4 20-21 0.0 0.0 0.0 9.192325511277145E-5 9.422133649059074E-4 22-23 0.0 0.0 0.0 2.987505791165072E-4 0.001034136620018679 24-25 0.0 0.0 0.0 4.825970893420501E-4 0.0011490406889096431 26-27 0.0 0.0 0.0 9.192325511277145E-4 0.0011950023164660289 28-29 0.0 2.2980813778192863E-5 0.0 0.003814815087180015 0.0011950023164660289 30-31 0.0 4.5961627556385725E-5 0.0 0.014960509769603555 0.0011950023164660289 32-33 0.0 4.5961627556385725E-5 0.0 0.04049219387717582 0.0011950023164660289 34-35 0.0 4.5961627556385725E-5 0.0 0.07687082208805512 0.0012179831302442218 36-37 0.0 4.5961627556385725E-5 0.0 0.1332887199135186 0.0012639447578006073 38-39 0.0 4.5961627556385725E-5 0.0 0.21466378150209953 0.0013788488266915718 40-41 0.0 4.5961627556385725E-5 0.0 0.30072692910143184 0.0014248104542479575 42-43 0.0 4.5961627556385725E-5 0.0 0.4009462579881309 0.0014248104542479575 44-45 0.0 4.5961627556385725E-5 0.0 0.5280071773677593 0.0015397145231389217 46-47 0.0 4.5961627556385725E-5 0.0 0.6749924622930807 0.001677599405808079 48-49 0.0 4.5961627556385725E-5 0.0 0.8144170594853768 0.0017465418471426576 50-51 0.0 4.5961627556385725E-5 0.0 0.9563006037519396 0.0017465418471426576 52-53 0.0 4.5961627556385725E-5 0.0 1.1059746438893097 0.0018844267298118147 54-55 0.0 6.894244133457859E-5 0.0 1.2924179860717884 0.0019303883573682005 56-57 0.0 9.192325511277145E-5 0.0 1.50731157571167 0.001976349984924586 58-59 0.0 9.192325511277145E-5 0.0 1.721952376399991 0.001976349984924586 60-61 0.0 9.192325511277145E-5 0.0 1.934157210827824 0.001976349984924586 62-63 0.0 9.192325511277145E-5 0.0 2.156289756807836 0.002160196495150129 64-65 0.0 9.192325511277145E-5 0.0 2.4134680437995923 0.002160196495150129 66-67 0.0 9.192325511277145E-5 0.0 2.7256623989763424 0.002160196495150129 68-69 0.0 9.192325511277145E-5 0.0 3.0513924534684485 0.002160196495150129 70-71 0.0 9.192325511277145E-5 0.0 3.376525006802321 0.0022521197502629008 72-73 0.0 9.192325511277145E-5 0.0 3.708528823455873 0.0025049087018230217 74-75 0.0 9.192325511277145E-5 0.0 4.080588198524816 0.002665774398270372 76-77 0.0 9.192325511277145E-5 0.0 4.512144900465499 0.0027117360258267576 78-79 0.0 9.192325511277145E-5 0.0 4.981022443981969 0.0027576976533831435 80-81 0.0 9.192325511277145E-5 0.0 5.450152776449998 0.0027576976533831435 82-83 0.0 9.192325511277145E-5 0.0 5.924407830390564 0.0029185633498304935 84-85 0.0 9.192325511277145E-5 0.0 6.446554900244884 0.0029415441636086864 86-87 0.0 9.192325511277145E-5 0.0 7.039276049212034 0.003033467418721458 88-89 0.0 9.192325511277145E-5 0.0 7.681681717567637 0.0031253906738342293 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 1695 0.0 55.151222 1 GTATCAA 2985 0.0 38.94757 1 TCAACGC 3720 0.0 30.362852 4 CAACGCA 3795 0.0 29.633656 5 TATCAAC 3785 0.0 29.590664 2 ATCAACG 3825 0.0 29.279198 3 AACGCAG 4005 0.0 27.954279 6 GTACATG 5020 0.0 27.318243 1 TAGTACG 130 1.0095631E-5 25.554256 4 TACATGG 5365 0.0 24.768337 2 ACATGGG 5555 0.0 23.57782 3 ACGCAGA 4845 0.0 22.81817 7 CGCAGAG 4880 0.0 22.075706 8 CATGGGG 4825 0.0 21.737196 4 TAAGGCG 555 0.0 18.809546 5 GAGTACA 3890 0.0 18.29786 1 GCAGAGT 5745 0.0 17.760166 9 AGAGTAC 4670 0.0 17.631374 10-11 CGTATAC 135 0.009454895 17.57579 3 CAGAGTA 5340 0.0 17.018885 10-11 >>END_MODULE