##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921400_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2175728 Sequences flagged as poor quality 0 Sequence length 101 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.40765711522764 33.0 31.0 34.0 29.0 34.0 2 31.544530842090555 34.0 31.0 34.0 29.0 34.0 3 31.622483141275012 34.0 31.0 34.0 28.0 34.0 4 35.092562581352084 37.0 35.0 37.0 33.0 37.0 5 34.82373761793754 37.0 35.0 37.0 32.0 37.0 6 34.77933225109021 37.0 35.0 37.0 32.0 37.0 7 34.64477407102358 37.0 35.0 37.0 32.0 37.0 8 34.60369770486017 37.0 35.0 37.0 32.0 37.0 9 36.23161534897744 39.0 37.0 39.0 32.0 39.0 10-11 36.08273621518866 39.0 37.0 39.0 32.0 39.0 12-13 36.02155784178905 39.0 37.0 39.0 31.5 39.0 14-15 37.27801522065258 40.0 38.0 41.0 31.0 41.0 16-17 37.25980752189612 40.0 38.0 41.0 31.0 41.0 18-19 37.21640388872139 40.0 38.0 41.0 31.0 41.0 20-21 37.17948176426465 40.0 38.0 41.0 31.0 41.0 22-23 37.06682751704257 40.0 38.0 41.0 31.0 41.0 24-25 37.00407426847474 40.0 38.0 41.0 31.0 41.0 26-27 36.8740030922983 40.0 37.0 41.0 30.0 41.0 28-29 36.721499884176694 40.0 37.0 41.0 30.0 41.0 30-31 36.58544289543546 40.0 37.0 41.0 30.0 41.0 32-33 36.54103178338468 40.0 37.0 41.0 30.0 41.0 34-35 36.67193969099078 40.0 37.0 41.0 30.0 41.0 36-37 36.64914663046116 40.0 37.0 41.0 30.0 41.0 38-39 36.559536853871435 40.0 37.0 41.0 30.0 41.0 40-41 36.438737057205685 40.0 37.0 41.0 30.0 41.0 42-43 36.33363453519925 40.0 37.0 41.0 29.0 41.0 44-45 36.19852527521823 40.0 36.0 41.0 29.0 41.0 46-47 36.04786650721046 40.0 36.0 41.0 28.0 41.0 48-49 35.88823442084672 40.0 36.0 41.0 28.0 41.0 50-51 35.73170635300001 40.0 35.0 41.0 27.0 41.0 52-53 35.55854523175691 39.0 35.0 41.0 27.0 41.0 54-55 35.34829767323856 39.0 35.0 41.0 26.5 41.0 56-57 35.08151777244214 39.0 35.0 41.0 26.0 41.0 58-59 34.85544677459683 38.5 35.0 41.0 26.0 41.0 60-61 34.58072424494238 38.0 34.5 40.0 25.5 41.0 62-63 34.28755455645191 37.5 34.0 40.0 25.0 41.0 64-65 33.96680651257878 37.0 34.0 40.0 24.5 41.0 66-67 33.621012828809484 36.5 34.0 39.5 23.0 41.0 68-69 33.25206390688542 36.0 34.0 39.0 22.5 41.0 70-71 32.87024733790253 35.5 33.0 39.0 22.0 40.0 72-73 32.46879274431363 35.0 33.0 37.5 21.0 40.0 74-75 32.05877710816793 35.0 33.0 37.0 20.0 39.0 76-77 29.310670957031395 33.0 29.0 34.5 13.0 36.5 78-79 30.96352094563291 34.5 31.5 36.0 17.0 37.0 80-81 31.155382014663594 35.0 32.0 36.0 18.0 37.0 82-83 30.99747808549598 35.0 32.0 35.0 17.5 37.0 84-85 30.770750985417294 35.0 32.0 35.0 14.0 36.0 86-87 30.53155702367208 35.0 32.0 35.0 8.5 36.0 88-89 30.260473046263137 35.0 32.0 35.0 2.0 36.0 90-91 30.084375896251736 35.0 32.0 35.0 2.0 35.0 92-93 29.949757276644874 34.0 31.0 35.0 2.0 35.0 94-95 29.859473013170764 34.0 31.0 35.0 2.0 35.0 96-97 29.679014104704265 34.0 31.0 35.0 2.0 35.0 98-99 29.4209246284462 34.0 31.0 35.0 2.0 35.0 100-101 28.339535088944942 33.5 29.0 34.5 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 42795.0 3 14596.0 4 7621.0 5 5479.0 6 4604.0 7 4690.0 8 4840.0 9 5208.0 10 5785.0 11 6161.0 12 6571.0 13 7167.0 14 7805.0 15 8532.0 16 9268.0 17 9975.0 18 9323.0 19 8462.0 20 7902.0 21 7785.0 22 7946.0 23 9110.0 24 10434.0 25 12802.0 26 15372.0 27 18493.0 28 22116.0 29 26959.0 30 32834.0 31 40728.0 32 52415.0 33 69042.0 34 97744.0 35 148711.0 36 265742.0 37 524328.0 38 565631.0 39 70750.0 40 2.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.47493879820763 20.091174328667666 13.895223636274917 25.538663236849786 2 15.718881235231908 21.074209422991274 36.88685268010007 26.320056661676748 3 18.31079786009146 24.02676586350384 28.917860624644064 28.744575651760634 4 13.677254124732954 16.856479149277277 34.64293068389488 34.82333604209489 5 14.846393865960875 36.578364345116015 33.93499547845404 14.640246310469069 6 34.22058841779125 34.89421100988694 16.535053791907796 14.350146780414018 7 29.377104183662915 31.29393650392398 20.63284652242356 18.696112789989545 8 26.86672329253697 34.53369147357797 19.61815226843604 18.981432965449027 9 26.454088011001375 15.824956060684055 19.280626990138472 38.440328938176094 10-11 25.7656327102449 25.34671299858865 27.49838677952884 21.389267511637616 12-13 26.274427523369255 22.71737841507325 27.330398828526807 23.67779523303069 14-15 23.50573189736938 24.433641747968423 24.480226844368776 27.580399510293425 16-17 23.79377972001938 27.436938175005814 25.415172526637136 23.354109578337674 18-19 23.77568171654362 26.729966755847833 26.70716971523463 22.787181812373923 20-21 24.25143975989447 25.842253793014695 26.61731113061943 23.288995316471407 22-23 24.153786262117247 25.656483528908346 26.38780431866034 23.80192589031406 24-25 23.916234370759245 25.978844867339756 26.341925169009638 23.762995592891357 26-27 23.767105421911715 26.195882863265783 26.419676765123267 23.617334949699227 28-29 23.933615741302532 26.236132408153058 26.28039654785675 23.549855302687657 30-31 24.1170389159774 25.972370791480476 26.140433460100514 23.77015683244161 32-33 23.889573950448025 25.9828743548578 26.059894938499607 24.067656756194573 34-35 24.097373293019697 26.040127468319664 26.125144654478344 23.7373545841823 36-37 24.1449410250665 26.004354895235473 26.200681385982755 23.65002269371528 38-39 24.016637228176567 26.06460013521942 26.200187248100974 23.71857538850304 40-41 24.08252257941895 25.932749080310547 26.254430677351543 23.73029766291896 42-43 24.140781696117998 25.84429096520241 26.04355197575221 23.971375362927386 44-45 24.037233063339002 25.95052859302256 26.03025594341082 23.981982400227622 46-47 24.14675499257988 25.9620359149043 25.98033053038067 23.910878562135156 48-49 23.901976886336794 26.048298146627403 25.996539133100878 24.05318583393493 50-51 23.849578551880544 26.089725380746593 26.06554807560602 23.995147991766846 52-53 24.223654870187247 25.89592780042575 25.939706985112547 23.94071034427445 54-55 23.82175189788708 25.852308373959936 26.10158343785865 24.224356290294335 56-57 23.85125982554529 26.023049496249044 25.977130685670343 24.148559992535322 58-59 23.88127724797754 25.94822214882932 26.060954568949608 24.109546034243536 60-61 23.791800799938773 25.89991962920496 26.21692116652337 24.0913584043329 62-63 23.792033212607716 25.94500529462697 26.129392086722014 24.1335694060433 64-65 23.698221213253255 25.81494870542257 26.036840139084454 24.449989942239718 66-67 23.665434652317458 25.948902785354775 25.939591984619014 24.44607057770875 68-69 23.643943120641065 25.920082937571546 26.008606382147274 24.427367559640114 70-71 23.64000825818887 25.734558083438053 26.040193837533472 24.585239820839604 72-73 23.672222839038344 25.74396644642883 25.981605393838624 24.602205320694196 74-75 23.55884948398535 25.875300923302685 25.953087571353272 24.612762021358687 76-77 23.61844909129863 25.659704064448803 26.016826352685328 24.705020491567243 78-79 23.531213685529128 25.658458326596982 26.0274300238185 24.782897964055387 80-81 23.49391495655117 25.77601319284511 25.991762749527254 24.73830910107647 82-83 23.452559089958328 25.722077796702504 26.059964556368477 24.7653985569707 84-85 23.451599836873786 25.69251628618443 26.00042390746128 24.8554599694805 86-87 23.353961238612715 25.748119982556823 25.968298683113787 24.929620095716672 88-89 23.31493780073424 25.591480005889395 25.956456712126695 25.13712548124967 90-91 23.1401087025435 25.589985072132148 26.048380124610233 25.221526100714115 92-93 23.164800255318543 25.496053530438758 26.1740364679678 25.1651097462749 94-95 23.03911237992191 25.36302945074624 26.2259576657732 25.37190050355865 96-97 23.011084833566613 25.26542235215434 26.235063744113408 25.48842907016564 98-99 22.863180982295805 25.330296148502157 26.1299472031747 25.67657566602733 100-101 22.802397119632374 25.21732715691472 26.196347878803756 25.783927844649146 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 28.0 1 23.0 2 36.5 3 55.5 4 47.0 5 55.0 6 114.5 7 227.5 8 328.5 9 367.0 10 339.0 11 283.5 12 270.0 13 294.0 14 335.5 15 376.0 16 409.0 17 452.0 18 533.5 19 604.5 20 661.0 21 787.5 22 919.5 23 1075.5 24 1294.5 25 1643.0 26 2183.0 27 2913.0 28 3942.0 29 5377.5 30 7485.0 31 10512.0 32 15059.5 33 19508.5 34 23483.5 35 28633.0 36 35471.0 37 42381.5 38 48780.5 39 54969.0 40 60503.5 41 65937.0 42 71510.5 43 77446.0 44 82954.5 45 88450.5 46 92274.0 47 94779.5 48 97782.5 49 99219.0 50 98353.0 51 96721.0 52 95515.0 53 93846.0 54 91282.5 55 86688.5 56 79535.5 57 71024.0 58 63442.5 59 55654.5 60 45996.0 61 37478.0 62 30366.5 63 22942.5 64 16379.0 65 11901.0 66 8877.5 67 6862.5 68 5301.0 69 4024.0 70 3004.5 71 2184.5 72 1530.5 73 1109.0 74 851.5 75 626.0 76 426.0 77 268.0 78 168.0 79 97.0 80 58.0 81 35.0 82 21.0 83 13.0 84 8.0 85 8.5 86 10.5 87 6.5 88 2.5 89 2.0 90 1.0 91 1.0 92 1.5 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.15654530345704978 2 3.217313928947001E-4 3 0.005561356934322673 4 0.0033092371840597722 5 0.02697947537559842 6 0.001332887199135186 7 1.3788488266915718E-4 8 0.002022311612480972 9 0.0 10-11 0.10481549164233764 12-13 2.7576976533831435E-4 14-15 0.006411647044115809 16-17 2.7576976533831435E-4 18-19 3.217313928947001E-4 20-21 8.273092960149431E-4 22-23 3.217313928947001E-4 24-25 0.0017695226609208505 26-27 0.003010486604943265 28-29 0.00698616738857063 30-31 0.016040608017178618 32-33 0.01542012604516741 34-35 0.013122044667348126 36-37 7.124052271239787E-4 38-39 2.2980813778192865E-4 40-41 0.005952030768551951 42-43 0.008709728421935094 44-45 0.008663766794378708 46-47 0.010318385386408595 48-49 0.012018965605994867 50-51 0.006158858092555687 52-53 0.0016775994058080789 54-55 8.732709235713288E-4 56-57 0.006848282505901473 58-59 0.010226462131295824 60-61 0.008571843539265938 62-63 0.018821286484339957 64-65 0.03633266658332292 66-67 0.038354978195803885 68-69 0.027485053278718665 70-71 0.042146812469205715 72-73 0.026634763168925525 74-75 0.025163991087121185 76-77 0.2446537434826412 78-79 0.07250446747019848 80-81 0.05588933910856504 82-83 0.020361001007478875 84-85 0.03332217997837965 86-87 0.08328246913217094 88-89 0.26319926020164286 90-91 0.32014571674400477 92-93 0.05467135597832082 94-95 0.005170683100093394 96-97 0.010709059220637874 98-99 0.001332887199135186 100-101 0.0015397145231389217 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 2175728.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 66.0205172225917 #Duplication Level Percentage of deduplicated Percentage of total 1 80.95016133913597 53.44371520862005 2 11.008461716404023 14.535686726841865 3 3.421493560047085 6.776663235242254 4 1.519919733982912 4.013835478975034 5 0.8414691592471786 2.777711456017906 6 0.5319818229397494 2.1073029062099677 7 0.3645802204455326 1.6848842306058396 8 0.2552030170705538 1.3478908147011093 9 0.1989818533972511 1.1823196391276791 >10 0.8730265203137688 9.599316560546987 >50 0.0254760811259577 1.1217784924855847 >100 0.008405577682384608 0.9992675348841397 >500 6.994985063246372E-4 0.30622788986293 >1k 1.3989970126480393E-4 0.10339982587884639 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.2980813778192863E-4 2 0.0 0.0 0.0 0.0 2.2980813778192863E-4 3 0.0 0.0 0.0 0.0 2.2980813778192863E-4 4 0.0 0.0 0.0 0.0 2.2980813778192863E-4 5 0.0 0.0 0.0 0.0 2.2980813778192863E-4 6 0.0 0.0 0.0 0.0 2.2980813778192863E-4 7 0.0 0.0 0.0 0.0 2.2980813778192863E-4 8 0.0 0.0 0.0 0.0 2.2980813778192863E-4 9 0.0 0.0 0.0 0.0 2.7576976533831435E-4 10-11 0.0 0.0 0.0 0.0 3.217313928947001E-4 12-13 0.0 0.0 0.0 0.0 5.05577903120243E-4 14-15 0.0 0.0 0.0 0.0 5.745203444548216E-4 16-17 0.0 0.0 0.0 2.2980813778192863E-5 7.353860409021716E-4 18-19 0.0 0.0 0.0 4.5961627556385725E-5 7.813476684585573E-4 20-21 0.0 0.0 0.0 1.3788488266915718E-4 7.813476684585573E-4 22-23 0.0 0.0 0.0 2.987505791165072E-4 9.192325511277145E-4 24-25 0.0 0.0 0.0 4.825970893420501E-4 0.0010571174337968717 26-27 0.0 0.0 0.0 8.962517373495216E-4 0.0011260598751314504 28-29 0.0 0.0 0.0 0.003745872645845437 0.0011490406889096431 30-31 0.0 0.0 0.0 0.01500647139715994 0.0011720215026878359 32-33 0.0 0.0 0.0 0.04131950317319077 0.0011950023164660289 34-35 0.0 0.0 0.0 0.07843351742497223 0.0012869255715788003 36-37 0.0 0.0 0.0 0.135839590242898 0.001332887199135186 38-39 0.0 0.0 0.0 0.21783513380349012 0.001332887199135186 40-41 0.0 0.0 0.0 0.3047485715126156 0.001332887199135186 42-43 0.0 0.0 0.0 0.4050368428406492 0.0013558680129133788 44-45 0.0 0.0 0.0 0.5323275703580594 0.0014018296404697647 46-47 0.0 0.0 0.0 0.6797724715589448 0.0014937528955825362 48-49 0.0 0.0 0.0 0.8202541861850379 0.0015626953369171147 50-51 0.0 0.0 0.0 0.9618619606862623 0.0016086569644735004 52-53 0.0 0.0 0.0 1.1115589816374105 0.0018844267298118145 54-55 0.0 0.0 0.0 1.2983470360265623 0.001976349984924586 56-57 0.0 0.0 0.0 1.5131257215975524 0.001976349984924586 58-59 0.0 0.0 0.0 1.7283870042578853 0.001976349984924586 60-61 0.0 0.0 0.0 1.9409825125199474 0.001976349984924586 62-63 0.0 0.0 0.0 2.1632069817550725 0.001976349984924586 64-65 0.0 0.0 0.0 2.4199026716574865 0.001976349984924586 66-67 0.0 0.0 0.0 2.732005103579124 0.001976349984924586 68-69 0.0 0.0 0.0 3.0579190045814553 0.001976349984924586 70-71 0.0 0.0 0.0 3.3839937712802337 0.002160196495150129 72-73 0.0 0.0 0.0 3.716572108278241 0.002298081377819286 74-75 0.0 0.0 0.0 4.091366200186788 0.0023900046329320577 76-77 0.0 0.0 0.0 4.525887427104859 0.0025049087018230217 78-79 0.0 0.0 0.0 4.99867170896362 0.0025738511431576006 80-81 0.0 0.0 0.0 5.471731760587721 0.0025968319569357936 82-83 0.0 0.0 0.0 5.94899730113323 0.002619812770713986 84-85 0.0 0.0 0.0 6.47711938256988 0.002619812770713986 86-87 0.0 0.0 0.0 7.076321121022481 0.0027117360258267576 88-89 0.0 0.0 0.0 7.725230359677312 0.002803659280939529 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 1705 0.0 46.551636 1 GTATCAA 2880 0.0 39.441036 1 TCAACGC 3540 0.0 31.230305 4 ATCAACG 3625 0.0 30.367117 3 TATCAAC 3710 0.0 30.055056 2 CAACGCA 3670 0.0 29.793026 5 AACGCAG 3920 0.0 27.89039 6 GTACATG 4695 0.0 24.902468 1 TACATGG 5050 0.0 22.83171 2 ACGCAGA 4865 0.0 21.886587 7 CGCAGAG 4980 0.0 21.094818 8 ACATGGG 5270 0.0 21.068266 3 TATACCG 225 1.6558661E-6 19.015724 5 CATGGGG 4730 0.0 17.855928 4 GTATAGG 495 0.0 17.282642 1 GCAGAGT 5930 0.0 16.913778 9 AGAGTAC 4805 0.0 16.570448 10-11 GTATTAA 1095 0.0 16.49348 1 TCTATAC 700 0.0 16.268097 3 GAGTACT 2685 0.0 16.168154 12-13 >>END_MODULE