##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921399_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3391515 Sequences flagged as poor quality 0 Sequence length 101 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.417889055481105 33.0 31.0 34.0 29.0 34.0 2 31.551959522514274 34.0 31.0 34.0 29.0 34.0 3 31.634184722756643 34.0 31.0 34.0 28.0 34.0 4 35.11480267667989 37.0 35.0 37.0 33.0 37.0 5 34.8555085264255 37.0 35.0 37.0 32.0 37.0 6 34.81395128725658 37.0 35.0 37.0 32.0 37.0 7 34.68144531278794 37.0 35.0 37.0 32.0 37.0 8 34.64130749827142 37.0 35.0 37.0 32.0 37.0 9 36.26899512459771 39.0 37.0 39.0 32.0 39.0 10-11 36.12522574719557 39.0 37.0 39.0 32.0 39.0 12-13 36.05431628637939 39.0 37.0 39.0 32.0 39.0 14-15 37.320226506443284 40.0 38.0 41.0 32.0 41.0 16-17 37.29735516428499 40.0 38.0 41.0 31.5 41.0 18-19 37.25444263109554 40.0 38.0 41.0 31.0 41.0 20-21 37.2157695012406 40.0 38.0 41.0 31.0 41.0 22-23 37.10562565697041 40.0 38.0 41.0 31.0 41.0 24-25 37.04377438991129 40.0 38.0 41.0 31.0 41.0 26-27 36.91391266145071 40.0 37.0 41.0 30.0 41.0 28-29 36.76425270122644 40.0 37.0 41.0 30.0 41.0 30-31 36.63973017958051 40.0 37.0 41.0 30.0 41.0 32-33 36.60528112067911 40.0 37.0 41.0 30.0 41.0 34-35 36.74359850981051 40.0 37.0 41.0 30.0 41.0 36-37 36.72861154970566 40.0 37.0 41.0 30.0 41.0 38-39 36.647719676899555 40.0 37.0 41.0 30.0 41.0 40-41 36.53238169372685 40.0 37.0 41.0 30.0 41.0 42-43 36.438096396448195 40.0 37.0 41.0 30.0 41.0 44-45 36.31283585654199 40.0 36.5 41.0 29.0 41.0 46-47 36.173737990249194 40.0 36.0 41.0 28.5 41.0 48-49 36.026040427360634 40.0 36.0 41.0 28.0 41.0 50-51 35.87489057250226 40.0 35.5 41.0 28.0 41.0 52-53 35.70493112959842 39.5 35.0 41.0 28.0 41.0 54-55 35.49922718902909 39.0 35.0 41.0 27.0 41.0 56-57 35.23781790733639 39.0 35.0 41.0 26.0 41.0 58-59 35.013023235928486 39.0 35.0 41.0 26.0 41.0 60-61 34.73461550369083 38.0 35.0 40.0 26.0 41.0 62-63 34.435528075211224 37.5 34.0 40.0 26.0 41.0 64-65 34.11755130081984 37.0 34.0 40.0 26.0 41.0 66-67 33.774779117886844 36.5 34.0 39.5 25.0 41.0 68-69 33.41037692594607 36.0 34.0 39.0 24.0 41.0 70-71 33.02916838050252 35.5 33.5 39.0 23.5 40.0 72-73 32.63623159561435 35.0 33.0 37.5 22.0 40.0 74-75 32.23142857985296 35.0 33.0 37.0 21.5 39.0 76-77 29.489391319218697 33.0 29.0 34.5 16.5 36.5 78-79 31.13684695482697 34.5 31.5 36.0 19.0 37.5 80-81 31.334498889139514 35.0 32.0 36.0 20.0 37.0 82-83 31.175316635780764 35.0 32.5 35.0 19.5 37.0 84-85 30.947570923318928 35.0 32.0 35.0 18.0 36.5 86-87 30.705645559580304 35.0 32.0 35.0 16.5 36.0 88-89 30.433118090292982 35.0 32.0 35.0 10.0 36.0 90-91 30.258712404338475 35.0 32.0 35.0 6.0 35.0 92-93 30.11947241866835 34.0 32.0 35.0 4.5 35.0 94-95 30.02834559186676 34.0 32.0 35.0 2.0 35.0 96-97 29.849676029738923 34.0 31.5 35.0 2.0 35.0 98-99 29.591825629549035 34.0 31.0 35.0 2.0 35.0 100-101 28.51758992662571 33.5 29.0 34.5 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 64165.0 3 21527.0 4 11659.0 5 8143.0 6 7040.0 7 7013.0 8 7117.0 9 7898.0 10 8675.0 11 9331.0 12 10054.0 13 10594.0 14 11274.0 15 12400.0 16 13305.0 17 14229.0 18 13578.0 19 12192.0 20 11512.0 21 11608.0 22 12152.0 23 13897.0 24 16476.0 25 19787.0 26 23877.0 27 28564.0 28 34582.0 29 41753.0 30 51025.0 31 63734.0 32 81111.0 33 107774.0 34 153518.0 35 232196.0 36 415501.0 37 825354.0 38 880875.0 39 116022.0 40 3.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.01207076380448 19.440940194261454 13.361026753178335 26.185962288755725 2 15.039994055734565 20.30347008288948 37.63327420519038 27.023261656185575 3 18.07031102794413 24.036159552832643 28.882349940421133 29.011179478802102 4 13.02151966628167 16.29580790968115 35.05522705767563 35.62744536636155 5 14.22214383589521 37.09012585921016 34.365457111897726 14.322273192996903 6 34.47477106622678 35.304467101854854 16.288420139508293 13.932341692410075 7 29.48783194712434 31.34320348730239 20.532306610872343 18.636657954700922 8 27.034957950089726 35.44119528956086 18.98909786563018 18.534748894719243 9 26.285155748979438 15.635224965833853 19.010914001559776 39.06870528362693 10-11 25.88993673751648 25.39474857044024 27.423551683447922 21.291763008595364 12-13 26.17871464895416 22.488874028214347 27.5071233198629 23.8252880029686 14-15 23.226812722083807 24.2300222435807 24.39616721003988 28.146997824295617 16-17 23.79344375016217 27.451399257912108 25.21391638891444 23.541240603011282 18-19 23.81174504431216 26.81961145885885 26.36420918488448 23.004434311944514 20-21 24.189751407198607 25.943906660494353 26.44906810870738 23.417273823599658 22-23 24.025451233972642 25.725728588675445 26.254328645493867 23.99449153185805 24-25 23.864037606305853 25.99658995666311 26.176070577429584 23.963301859601454 26-27 23.75784881620907 26.172726294326736 26.200664320560467 23.868760568903724 28-29 23.86647751649879 26.215555704301792 26.105155855747736 23.812810923451682 30-31 24.077861872807617 25.997985847853368 26.0301886903735 23.893963588965512 32-33 23.80651865006524 26.089389437048467 26.00170127132358 24.102390641562714 34-35 24.08585354518393 26.059917716977125 26.068115645643648 23.78611309219529 36-37 24.131449792642456 25.88806968039074 26.14971023017941 23.830770296787396 38-39 24.008837362832097 26.104187530655597 26.036916600115674 23.850058506396635 40-41 24.08386064075389 25.900150219771422 26.100394103907142 23.91559503556754 42-43 24.005173947672535 25.930601396959972 25.94415108894407 24.12007356642342 44-45 23.946979764147766 25.974339425462738 26.04098184333223 24.037698967057267 46-47 24.0797306081972 25.9529643610828 25.922974928155845 24.044330102564153 48-49 23.933780136547504 26.037328292728603 25.965390567001684 24.063501003722212 50-51 23.963222509508483 26.1331044741219 25.917804414130398 23.985868602239222 52-53 24.167977064765264 25.943818346241727 25.8656957189272 24.02250887006581 54-55 23.74759341827264 25.97048693041284 26.138053867625068 24.143865783689453 56-57 23.863712594378853 26.095175077186056 25.925078992138307 24.116033336296784 58-59 23.92717853690643 25.96725405004367 26.000811512627692 24.104755900422212 60-61 23.88404244088772 26.062511315859776 26.04997909330402 24.003467149948484 62-63 23.899925830572254 26.05748941647977 26.00250377113939 24.040080981808583 64-65 23.681548911248075 25.90049446893258 26.049404419190726 24.368552200628617 66-67 23.704918308410914 26.00108164055996 25.98345741818268 24.310542632846445 68-69 23.786053987892906 25.918597877941057 26.003421248608273 24.29192688555776 70-71 23.71949073723104 25.791906791497652 25.994099839030206 24.494502632241097 72-73 23.74042263467814 25.957367867123676 25.851634727246104 24.450574770952084 74-75 23.651614187597463 26.028217407493425 25.903063951837968 24.41710445307114 76-77 23.701477953646293 25.713692070429637 26.086106479103353 24.498723496820713 78-79 23.637453745790612 25.758161852334112 26.019097408170953 24.585286993704322 80-81 23.722930990001466 25.8846165816996 25.874143513195254 24.518308915103685 82-83 23.66732703050822 25.864664980244385 26.006843502617 24.461164486630395 84-85 23.704906776294077 25.81983858508438 25.874050589415443 24.601204049206096 86-87 23.504730012458737 25.95484046499248 25.931380736346288 24.609048786202493 88-89 23.41618192683768 25.76645012581088 25.9632185532288 24.854149394122636 90-91 23.395631211547563 25.76416824420256 25.975597491717938 24.864603052531944 92-93 23.468964811258886 25.691769508597833 26.06682677684985 24.772438903293427 94-95 23.38118062302715 25.553593043468005 26.119430491442188 24.94579584206266 96-97 23.26879604242317 25.41665609999628 26.188794650571513 25.125753207009033 98-99 23.16470455896105 25.43272248101741 26.07277064901332 25.329802311008216 100-101 23.151539151165863 25.46909321005519 26.125800852640758 25.253566786138197 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 34.0 1 34.5 2 42.5 3 59.5 4 61.5 5 75.0 6 138.0 7 265.0 8 379.0 9 423.0 10 375.0 11 307.0 12 298.5 13 339.5 14 386.0 15 410.0 16 476.0 17 540.0 18 598.0 19 683.0 20 792.5 21 889.0 22 1111.5 23 1433.5 24 1739.0 25 2308.5 26 3290.0 27 4686.0 28 6657.5 29 9651.0 30 14000.0 31 19871.5 32 28038.5 33 35404.0 34 41564.0 35 48795.5 36 57977.0 37 67998.0 38 76934.0 39 85721.0 40 93957.0 41 102308.0 42 110419.5 43 117325.0 44 123436.5 45 130894.5 46 136765.0 47 140652.5 48 145438.5 49 147939.5 50 147690.5 51 146945.0 52 145851.5 53 143895.5 54 140895.5 55 135503.0 56 127499.0 57 116059.5 58 104009.0 59 90801.5 60 75482.5 61 62549.5 62 50790.5 63 38022.5 64 26844.5 65 19366.0 66 14554.5 67 11214.5 68 8416.5 69 6309.5 70 4678.0 71 3293.0 72 2258.5 73 1536.5 74 1102.0 75 767.0 76 503.0 77 304.5 78 178.5 79 101.5 80 60.0 81 38.0 82 21.5 83 15.0 84 15.0 85 10.0 86 6.5 87 5.0 88 2.5 89 3.0 90 3.0 91 1.5 92 1.0 93 0.0 94 1.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.15187902751425247 2 3.243388279279319E-4 3 0.006250893774611052 4 0.00448177289500415 5 0.02656629854209697 6 9.435311357903473E-4 7 3.243388279279319E-4 8 0.0020344890115479367 9 0.0 10-11 0.10051555130966544 12-13 3.980521979115528E-4 14-15 0.005882326924692947 16-17 8.845604398034508E-5 18-19 2.3588278394758683E-4 20-21 7.371336998362089E-4 22-23 2.801108059377594E-4 24-25 0.0018428342495905223 26-27 0.0023588278394758686 28-29 0.006073981686650362 30-31 0.01503752747665866 32-33 0.015376608978583318 34-35 0.012221676743284343 36-37 8.845604398034507E-4 38-39 1.6216941396396596E-4 40-41 0.004437544873013978 42-43 0.008668692310073818 44-45 0.008300125460155712 46-47 0.009450054031900197 48-49 0.011425572347461239 50-51 0.005941297620679843 52-53 0.0015332380956593146 54-55 0.0010172445057739683 56-57 0.005793870880712601 58-59 0.009346855313923128 60-61 0.007577734434316228 62-63 0.018575769235872466 64-65 0.03570675642006596 66-67 0.0381687829775189 68-69 0.027716227113841453 70-71 0.042399930414578735 72-73 0.02664001191208059 74-75 0.025873392864250933 76-77 0.2374455073912396 78-79 0.06970336265651192 80-81 0.05509337272575825 82-83 0.02086088370536471 84-85 0.03308256044864906 86-87 0.08046551467412055 88-89 0.26119595519996225 90-91 0.3159355037497991 92-93 0.052071124556429794 94-95 0.00501250915888622 96-97 0.010290386449713477 98-99 0.0015184954216625904 100-101 0.0015184954216625904 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 3391515.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 56.967151737840894 #Duplication Level Percentage of deduplicated Percentage of total 1 75.51977644296515 43.021465638342185 2 13.180403444777733 15.017000860092278 3 4.655508354529596 7.956331525478204 4 2.1186874824489292 4.827823651909291 5 1.2146975030726321 3.4598928486557545 6 0.7323829329520737 2.5033061803011436 7 0.5003847848222363 1.9953847174992636 8 0.36508898026798026 1.6638463469391704 9 0.26173594998232663 1.341931642010202 >10 1.3689887749002894 13.544195200792238 >50 0.06295785442546238 2.41196930399807 >100 0.018036564641416883 1.6075283046907025 >500 9.352593805235533E-4 0.37996851746648524 >1k 4.1567083371325824E-4 0.26935526182494485 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 2.9485347993448354E-5 0.0 4 0.0 0.0 0.0 2.9485347993448354E-5 0.0 5 0.0 0.0 0.0 2.9485347993448354E-5 0.0 6 0.0 0.0 0.0 2.9485347993448354E-5 0.0 7 0.0 0.0 0.0 2.9485347993448354E-5 0.0 8 0.0 0.0 0.0 2.9485347993448354E-5 0.0 9 0.0 0.0 0.0 2.9485347993448354E-5 0.0 10-11 0.0 0.0 0.0 7.371336998362088E-5 0.0 12-13 0.0 0.0 0.0 8.845604398034506E-5 0.0 14-15 0.0 1.4742673996724177E-5 0.0 8.845604398034506E-5 2.9485347993448354E-5 16-17 0.0 2.9485347993448354E-5 0.0 8.845604398034506E-5 2.9485347993448354E-5 18-19 0.0 2.9485347993448354E-5 0.0 8.845604398034506E-5 2.9485347993448354E-5 20-21 0.0 4.422802199017253E-5 0.0 1.1794139197379342E-4 2.9485347993448354E-5 22-23 0.0 5.897069598689671E-5 0.0 2.3588278394758683E-4 5.897069598689671E-5 24-25 0.0 5.897069598689671E-5 0.0 4.12794871908277E-4 8.845604398034506E-5 26-27 0.0 5.897069598689671E-5 0.0 6.339349818591396E-4 8.845604398034506E-5 28-29 0.0 5.897069598689671E-5 0.0 0.002078717033538109 8.845604398034506E-5 30-31 0.0 8.845604398034506E-5 0.0 0.008167441394185194 8.845604398034506E-5 32-33 0.0 8.845604398034506E-5 0.0 0.021804414841155056 8.845604398034506E-5 34-35 0.0 8.845604398034506E-5 0.0 0.03967253572518476 1.1794139197379342E-4 36-37 0.0 8.845604398034506E-5 0.0 0.06735927749103277 1.1794139197379342E-4 38-39 0.0 8.845604398034506E-5 0.0 0.11385767127670082 1.4742673996724179E-4 40-41 0.0 8.845604398034506E-5 0.0 0.1684645357605672 1.4742673996724179E-4 42-43 0.0 8.845604398034506E-5 0.0 0.22544497075790612 1.4742673996724179E-4 44-45 0.0 8.845604398034506E-5 0.0 0.2947797665644999 1.4742673996724179E-4 46-47 0.0 8.845604398034506E-5 0.0 0.37707337281421427 1.7691208796069013E-4 48-49 0.0 8.845604398034506E-5 0.0 0.4656621008605299 1.7691208796069013E-4 50-51 0.0 8.845604398034506E-5 0.0 0.5593370514357152 1.7691208796069013E-4 52-53 0.0 8.845604398034506E-5 0.0 0.6588501009136035 1.7691208796069013E-4 54-55 0.0 8.845604398034506E-5 0.0 0.7705258564387891 1.7691208796069013E-4 56-57 0.0 8.845604398034506E-5 0.0 0.9004530423719193 1.7691208796069013E-4 58-59 0.0 8.845604398034506E-5 0.0 1.0416436312385469 1.7691208796069013E-4 60-61 0.0 8.845604398034506E-5 0.0 1.196146854724216 1.7691208796069013E-4 62-63 0.0 8.845604398034506E-5 0.0 1.3570189133764705 1.7691208796069013E-4 64-65 0.0 1.1794139197379342E-4 0.0 1.5312036066477666 1.7691208796069013E-4 66-67 2.9485347993448354E-5 1.1794139197379342E-4 0.0 1.7336205206227895 1.7691208796069013E-4 68-69 2.9485347993448354E-5 1.1794139197379342E-4 0.0 1.952844082954078 1.7691208796069013E-4 70-71 2.9485347993448354E-5 1.1794139197379342E-4 0.0 2.19180808576698 1.916547619574143E-4 72-73 2.9485347993448354E-5 1.1794139197379342E-4 0.0 2.4418733220994158 2.9485347993448357E-4 74-75 2.9485347993448354E-5 1.1794139197379342E-4 0.0 2.7067549457985587 2.9485347993448357E-4 76-77 2.9485347993448354E-5 1.1794139197379342E-4 0.0 3.0003258130953276 2.9485347993448357E-4 78-79 2.9485347993448354E-5 1.1794139197379342E-4 0.0 3.3394220576939806 2.9485347993448357E-4 80-81 2.9485347993448354E-5 1.3268406597051761E-4 0.0 3.6989811338000864 3.095961539312077E-4 82-83 2.9485347993448354E-5 1.4742673996724179E-4 0.0 4.076998037750091 3.243388279279319E-4 84-85 2.9485347993448354E-5 1.4742673996724179E-4 0.0 4.467339817161357 3.243388279279319E-4 86-87 2.9485347993448354E-5 1.4742673996724179E-4 0.0 4.880665425333516 3.390815019246561E-4 88-89 2.9485347993448354E-5 1.7691208796069013E-4 0.0 5.326483886994455 3.5382417592138025E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 2280 0.0 44.410923 1 GTATCAA 4015 0.0 40.96714 1 TCAACGC 4825 0.0 32.263397 4 CAACGCA 4840 0.0 32.222805 5 ATCAACG 5135 0.0 30.408083 3 TATCAAC 5255 0.0 30.346357 2 AACGCAG 5275 0.0 29.653519 6 GTACATG 8290 0.0 24.658066 1 TACATGG 8865 0.0 22.646528 2 ACGCAGA 6680 0.0 22.63359 7 CGCAGAG 6850 0.0 21.933065 8 ACATGGG 9040 0.0 21.210287 3 CATGGGG 7380 0.0 19.614492 4 GAGTACA 6470 0.0 17.92795 1 GCAGAGT 8505 0.0 16.93835 9 AGAGTAC 6880 0.0 16.689045 10-11 ATGGGGG 4505 0.0 15.304111 5 TATACAG 2035 0.0 15.187414 5 AGTACAT 6795 0.0 15.017201 2 CAGAGTA 7630 0.0 14.799325 10-11 >>END_MODULE