FastQCFastQC Report
Mon 15 Aug 2016
SRR2921394_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2921394_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1557055
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA18300.052.973391
GTATCAA31700.039.8750341
TATCAAC40500.031.0555362
ATCAACG40950.030.5983663
TCAACGC41550.030.0422844
CAACGCA42400.029.2593785
AACGCAG44450.027.9072656
GTGGTAT8550.026.122241
TGGTATC9600.022.7423212
ACGCAGA53800.022.3497567
CGCAGAG56750.021.020478
GTACATG49350.019.8362121
GTAAGTA10250.018.9848962
TACATGG51550.018.966482
TAAGTAC12550.018.9092583
GCAGAGT61600.017.8223869
GTACACT15100.017.6262386
ACATGGG54150.017.2669643
CAGAGTA57300.017.08626610-11
AGTACAC15150.016.9422685
Produced by FastQC (version 0.11.5)