##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921377_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3208138 Sequences flagged as poor quality 0 Sequence length 101 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.90543019034717 31.0 31.0 34.0 26.0 34.0 2 29.968247001843437 31.0 31.0 34.0 25.0 34.0 3 30.01370795146593 31.0 31.0 34.0 25.0 34.0 4 33.46683060392041 37.0 35.0 37.0 28.0 37.0 5 33.445180662427866 37.0 35.0 37.0 28.0 37.0 6 33.48212982109872 37.0 35.0 37.0 28.0 37.0 7 33.38979027710155 37.0 35.0 37.0 27.0 37.0 8 33.34680958238081 37.0 35.0 37.0 27.0 37.0 9 34.8423138281458 39.0 35.0 39.0 27.0 39.0 10-11 34.7198078760951 39.0 35.0 39.0 27.0 39.0 12-13 34.60039312523339 39.0 35.0 39.0 27.0 39.0 14-15 35.66555039091212 40.0 36.0 41.0 27.0 41.0 16-17 35.60771637629055 40.0 36.0 41.0 26.0 41.0 18-19 35.550551597219325 40.0 36.0 41.0 26.0 41.0 20-21 35.48851857370225 40.0 36.0 41.0 25.0 41.0 22-23 35.36615164310263 40.0 36.0 41.0 25.0 41.0 24-25 35.2614313972778 40.0 35.5 41.0 24.5 41.0 26-27 35.094483155026374 39.0 35.0 41.0 24.0 41.0 28-29 34.950039867362314 39.0 35.0 41.0 23.0 41.0 30-31 34.794300463384054 39.0 35.0 41.0 22.5 41.0 32-33 34.60971036782084 39.0 34.0 41.0 21.5 41.0 34-35 34.43895727054135 39.0 34.0 41.0 19.5 41.0 36-37 34.263248494921356 39.0 34.0 40.0 18.5 41.0 38-39 34.49451691292582 39.0 34.5 41.0 20.0 41.0 40-41 34.61148896961415 39.0 35.0 41.0 19.5 41.0 42-43 34.45158624722502 39.0 35.0 41.0 17.0 41.0 44-45 34.32978974096501 39.0 34.0 41.0 15.0 41.0 46-47 34.17026948341998 39.0 34.0 41.0 14.5 41.0 48-49 34.01923950902361 39.0 34.0 41.0 10.5 41.0 50-51 32.33082242721479 37.0 32.0 39.5 8.5 40.0 52-53 32.48220104621434 37.5 32.0 39.5 8.0 40.0 54-55 33.327141787541564 38.0 33.0 40.0 7.0 41.0 56-57 33.338472347511235 38.0 33.0 40.0 4.0 41.0 58-59 33.158099339866304 38.0 33.0 40.0 2.0 41.0 60-61 32.91255332532454 37.5 33.0 40.0 2.0 41.0 62-63 32.62732416747659 37.0 32.5 40.0 2.0 41.0 64-65 32.33926314890444 36.5 32.0 40.0 2.0 41.0 66-67 31.9976593899639 36.0 32.0 39.0 2.0 41.0 68-69 31.630780222047804 35.5 32.0 39.0 2.0 41.0 70-71 31.248313040149768 35.0 31.0 38.5 2.0 40.0 72-73 30.895813085347328 35.0 31.0 37.0 2.0 40.0 74-75 30.502018148845217 35.0 31.0 37.0 2.0 39.0 76-77 30.130146053567522 35.0 31.0 36.5 2.0 39.0 78-79 29.79125134267915 35.0 30.0 36.0 2.0 38.0 80-81 29.448561283835048 35.0 30.0 35.5 2.0 37.0 82-83 29.15645617489023 35.0 30.0 35.0 2.0 37.0 84-85 28.924074650155326 34.5 30.0 35.0 2.0 36.0 86-87 28.70103686312746 34.0 29.0 35.0 2.0 36.0 88-89 28.498715765967674 34.0 29.0 35.0 2.0 36.0 90-91 28.25116921404254 34.0 29.0 35.0 2.0 35.0 92-93 28.051639455659327 34.0 29.0 35.0 2.0 35.0 94-95 27.8426841364056 34.0 29.0 35.0 2.0 35.0 96-97 27.58254118120854 34.0 29.0 35.0 2.0 35.0 98-99 27.337743108307684 34.0 28.5 35.0 2.0 35.0 100-101 26.29737592335492 33.0 25.0 34.5 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 138378.0 3 22593.0 4 15295.0 5 11609.0 6 10357.0 7 10825.0 8 11505.0 9 11962.0 10 13081.0 11 13884.0 12 13768.0 13 14287.0 14 14705.0 15 15225.0 16 15818.0 17 16596.0 18 15340.0 19 14817.0 20 14837.0 21 15486.0 22 16813.0 23 19597.0 24 22848.0 25 27150.0 26 32040.0 27 37868.0 28 44349.0 29 52296.0 30 62222.0 31 74776.0 32 92808.0 33 119135.0 34 164520.0 35 235357.0 36 380339.0 37 656956.0 38 649849.0 39 108837.0 40 10.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.87466750912761 18.272566263493385 13.268541599679898 24.584224627699104 2 15.926208248238108 19.393508601427477 38.92166207349982 25.758621076834594 3 19.132426641883907 23.577917561975095 29.236620271757946 28.05303552438306 4 13.60967470292861 15.744440632504755 36.264541683560495 34.38134298100615 5 14.620082193951028 36.99039656803767 33.9931365743123 14.396384663699003 6 33.711844168638564 34.82234214685884 17.07398435575841 14.39182932874419 7 29.26575378851292 31.584704973131476 20.748197204376904 18.401344033978695 8 27.011351626047947 34.31751505080328 19.801899939827962 18.86923338332081 9 27.05503678440941 15.61400516855481 19.272804478790626 38.05815356824516 10-11 25.814202838996437 25.097126926131157 27.592309162465185 21.496361072407222 12-13 26.324326945097525 22.577347665356033 27.40775627267635 23.69056911687009 14-15 23.63617028873817 24.188770276357687 24.608584104423933 27.566475330480205 16-17 23.818757633327753 27.181163480507482 25.492750112015234 23.50732877414953 18-19 23.85618938376633 26.661602290474036 26.69039534247831 22.791812983281325 20-21 24.29065511986562 25.795548349631108 26.699332369367717 23.214464161135556 22-23 24.199798882580513 25.517805627763746 26.351621171997806 23.93077431765793 24-25 23.976275553838335 25.818289602709548 26.32438076803677 23.88105407541535 26-27 23.81024319440742 26.006367113019373 26.316226004449494 23.867163688123714 28-29 23.909305933082035 26.204810684576557 26.19025089755475 23.69563248478666 30-31 24.257453830813418 25.8404975756871 26.103083411764082 23.798965181735397 32-33 23.96942395665822 25.887121273406382 26.028869269037664 24.114585500897732 34-35 24.279943344710215 25.980552839537 26.078002182478727 23.661501633274057 36-37 24.300172579080822 25.8428484572384 26.084861278244766 23.77211768543601 38-39 24.132218317460314 26.016126093450666 26.031837274558967 23.819818314530053 40-41 24.249328828986794 25.827704848406917 26.097404545649372 23.825561776956917 42-43 24.08396566781848 25.786766142746885 25.99163017566759 24.137638013767052 44-45 24.052718209473596 25.81728997357687 26.072338790782513 24.05765302616702 46-47 24.22843244234317 25.91527136617086 25.828750788094705 24.02754540339126 48-49 23.936891915106273 25.970921243733702 25.90114472225259 24.19104211890744 50-51 24.0364708471067 25.9312258046985 26.020132239928373 24.012171108266426 52-53 24.184237355475982 25.852088867121616 26.02149150534867 23.94218227205373 54-55 23.813134397167886 25.711691445709484 26.25228677367898 24.222887383443652 56-57 23.894519771919953 25.89547596255144 26.041075587947127 24.168928677581484 58-59 23.9884129444909 25.799175405479787 26.14267315688381 24.069738493145508 60-61 24.045639491749125 25.765632931657905 26.231586839207477 23.95714073738549 62-63 23.996830641752876 25.778196776975705 26.263549662494274 23.96142291877715 64-65 23.801957576930413 25.61399776681228 26.28070535494924 24.303339301308068 66-67 23.81243084496231 25.803970992560732 26.128934272553423 24.25466388992353 68-69 23.85756304896397 25.728612483949426 26.140203691967667 24.273620775118932 70-71 23.816917616674967 25.534052742441443 26.18028739930641 24.468742241577182 72-73 23.788189917003052 25.750322071878635 26.070301459278404 24.39118655183991 74-75 23.70137662736368 25.827913537488996 26.173596806540576 24.297113028606745 76-77 23.719504949211807 25.505199994565853 26.235671146038168 24.53962391018417 78-79 23.687997499586466 25.50050053568017 26.261511578704688 24.549990386028675 80-81 23.784548031587573 25.626234939189718 26.11878129183016 24.47043573739255 82-83 23.762791657443902 25.656591943647744 26.218814879912948 24.36180151899541 84-85 23.76099317046137 25.67383568026644 26.184375831277613 24.380795317994583 86-87 23.558656870081723 25.77946435406437 26.206687528414108 24.4551912474398 88-89 23.520386442939284 25.54910251533172 26.260825549977383 24.669685491751608 90-91 23.5893221034845 25.45605117671577 26.340970430411577 24.613656289388157 92-93 23.63628580485513 25.3686078228364 26.462522573445423 24.532583798863044 94-95 23.53513235472886 25.25630476759524 26.526523914538725 24.682038963137177 96-97 23.49279320425106 25.091449204461064 26.555714600669596 24.860042990618282 98-99 23.28503538526964 25.093388427427936 26.547295086807882 25.074281100494538 100-101 23.46737836799419 25.003082000911554 26.687206047815465 24.84233358327879 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 54.0 1 40.5 2 43.5 3 70.5 4 81.0 5 109.5 6 173.0 7 322.5 8 479.0 9 546.0 10 502.5 11 448.0 12 491.0 13 562.0 14 650.5 15 731.5 16 836.0 17 938.0 18 1072.0 19 1237.5 20 1406.0 21 1576.5 22 1697.5 23 1872.5 24 2241.0 25 2779.5 26 3691.0 27 5135.5 28 7063.0 29 10152.5 30 14699.0 31 20539.0 32 28006.5 33 34728.0 34 40682.0 35 47630.0 36 56538.0 37 65141.5 38 72900.5 39 80934.5 40 87123.5 41 92832.5 42 99336.0 43 106974.0 44 114279.5 45 121558.0 46 127436.5 47 131528.5 48 136673.0 49 139657.0 50 138960.0 51 137173.5 52 135831.5 53 134818.0 54 132993.0 55 127604.5 56 118300.5 57 107084.5 58 96920.0 59 86525.5 60 72483.5 61 59514.0 62 49068.5 63 37674.0 64 26981.5 65 19521.5 66 14678.0 67 11311.0 68 8570.5 69 6466.5 70 5006.0 71 3703.0 72 2656.0 73 2036.0 74 1576.0 75 1182.0 76 889.5 77 595.5 78 384.0 79 304.0 80 214.0 81 156.0 82 129.0 83 101.0 84 83.0 85 72.0 86 62.5 87 45.5 88 42.5 89 46.5 90 36.5 91 29.5 92 25.5 93 16.5 94 17.0 95 16.0 96 14.5 97 14.5 98 9.0 99 8.0 100 8.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.05171223931140119 2 0.06003482393837173 3 0.050122532135463 4 0.05729179979165485 5 0.04912506880938414 6 0.017704974037899866 7 0.01499312062012295 8 0.02082204693189632 9 0.020728534745076427 10-11 0.022972827228753875 12-13 0.028505631615597587 14-15 0.046085922737737595 16-17 0.030703168005865086 18-19 0.02390794909695281 20-21 0.02806924141043808 22-23 0.04842372740823493 24-25 0.04374811806724025 26-27 0.03219936299498338 28-29 0.020993485941066127 30-31 0.013247559799484934 32-33 0.010364267372538214 34-35 0.009896706438438745 36-37 0.001355926708888458 38-39 0.007216023749601794 40-41 0.003911926481965551 42-43 0.22550463851617356 44-45 0.1994303237578932 46-47 0.2053371768920165 48-49 0.20223568936249 50-51 0.2012849821298211 52-53 0.20553978663012626 54-55 0.20494754278026694 56-57 0.21487541994764564 58-59 0.2121791518943387 60-61 0.21704178560897316 62-63 0.2138000297992169 64-65 0.21459488338718596 66-67 0.204028006276538 68-69 0.20382539653842818 70-71 0.18618276395840827 72-73 0.19366373890399977 74-75 0.19383517791316957 76-77 0.19212078782147152 78-79 0.2202991267831995 80-81 0.22824766266289045 82-83 0.2266891262158922 84-85 0.22182649250125774 86-87 0.24010812502454695 88-89 0.2389392226892983 90-91 0.23752095452252991 92-93 0.2416199053781352 94-95 0.25369856284237147 96-97 0.25365180674896154 98-99 0.24297583208702367 100-101 0.25268551415182267 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 3208138.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 57.72083199753817 #Duplication Level Percentage of deduplicated Percentage of total 1 78.26264120466855 45.17384764658281 2 11.727500764296881 13.538422027339617 3 3.936630272346337 6.816767237595775 4 1.8056425052019636 4.168927507615059 5 1.0634703942666741 3.0692197980911184 6 0.6524361373921327 2.259549400532041 7 0.46629908952169863 1.884061998482088 8 0.34395279515770644 1.5882593203505306 9 0.2558610285392954 1.329166029873059 >10 1.3862394620432987 14.275360764014868 >50 0.07259960387019784 2.8533020538922313 >100 0.02525973542331399 2.3551322446313723 >500 0.001141005656506037 0.47127388144434806 >1k 3.260016154541082E-4 0.21671008955496435 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 3.117072893996455E-5 5 0.0 0.0 0.0 0.0 3.117072893996455E-5 6 0.0 0.0 0.0 0.0 6.23414578799291E-5 7 0.0 0.0 0.0 0.0 6.23414578799291E-5 8 0.0 0.0 0.0 0.0 6.23414578799291E-5 9 0.0 0.0 0.0 0.0 6.23414578799291E-5 10-11 6.23414578799291E-5 0.0 0.0 0.0 6.23414578799291E-5 12-13 6.23414578799291E-5 0.0 0.0 0.0 9.351218681989366E-5 14-15 9.351218681989364E-5 0.0 0.0 0.0 1.246829157598582E-4 16-17 1.246829157598582E-4 0.0 0.0 0.0 1.5585364469982276E-4 18-19 1.246829157598582E-4 0.0 0.0 1.5585364469982275E-5 1.870243736397873E-4 20-21 1.246829157598582E-4 0.0 0.0 3.117072893996455E-5 1.870243736397873E-4 22-23 1.4026828022984048E-4 3.117072893996455E-5 0.0 6.23414578799291E-5 1.870243736397873E-4 24-25 1.870243736397873E-4 3.117072893996455E-5 0.0 2.1819510257975187E-4 1.870243736397873E-4 26-27 1.870243736397873E-4 3.117072893996455E-5 0.0 4.363902051595037E-4 1.870243736397873E-4 28-29 1.870243736397873E-4 3.117072893996455E-5 0.0 0.0019014144653378378 1.870243736397873E-4 30-31 1.870243736397873E-4 3.117072893996455E-5 0.0 0.0080888041599208 1.870243736397873E-4 32-33 1.870243736397873E-4 4.675609340994682E-5 0.0 0.024188485657412495 2.493658315197164E-4 34-35 2.1819510257975184E-4 6.23414578799291E-5 0.0 0.046600239765247006 2.8053656045968096E-4 36-37 2.493658315197164E-4 6.23414578799291E-5 0.0 0.0827426999711359 2.9612192492966323E-4 38-39 2.493658315197164E-4 6.23414578799291E-5 0.0 0.1384915486802625 3.272926538696278E-4 40-41 2.493658315197164E-4 6.23414578799291E-5 0.0 0.19846403116075428 3.4287801833961007E-4 42-43 2.493658315197164E-4 6.23414578799291E-5 0.0 0.265574610568498 4.052194762195392E-4 44-45 2.493658315197164E-4 6.23414578799291E-5 0.0 0.35196428582560974 4.2080484068952146E-4 46-47 2.493658315197164E-4 6.23414578799291E-5 0.0 0.44970010641686864 4.6756093409946824E-4 48-49 2.493658315197164E-4 6.23414578799291E-5 0.0 0.5562572432981374 5.299023919793974E-4 50-51 2.493658315197164E-4 6.23414578799291E-5 0.0 0.6660561359891626 5.922438498593265E-4 52-53 2.493658315197164E-4 6.23414578799291E-5 0.0 0.7833048328968393 7.013414011492025E-4 54-55 2.493658315197164E-4 6.23414578799291E-5 0.0 0.9202846012235134 7.792682234991138E-4 56-57 2.493658315197164E-4 6.23414578799291E-5 0.0 1.0836348062333978 7.792682234991138E-4 58-59 2.493658315197164E-4 6.23414578799291E-5 0.0 1.2558686689911718 7.94853587969096E-4 60-61 2.493658315197164E-4 6.23414578799291E-5 0.0 1.4337600190515496 8.104389524390784E-4 62-63 2.493658315197164E-4 6.23414578799291E-5 0.0 1.621392221905666 8.727804103190075E-4 64-65 2.493658315197164E-4 6.23414578799291E-5 0.0 1.8305322277283582 8.727804103190075E-4 66-67 2.493658315197164E-4 6.23414578799291E-5 0.0 2.073741840282432 8.727804103190075E-4 68-69 2.8053656045968096E-4 6.23414578799291E-5 0.0 2.337508548572412 8.727804103190075E-4 70-71 2.8053656045968096E-4 6.23414578799291E-5 0.0 2.6124032070939593 9.03951139258972E-4 72-73 2.8053656045968096E-4 6.23414578799291E-5 0.0 2.901246766816141 0.001013048690548848 74-75 2.8053656045968096E-4 6.23414578799291E-5 0.0 3.2194063971063587 0.0010286340550188303 76-77 2.8053656045968096E-4 6.23414578799291E-5 0.0 3.5802543406798586 0.0010286340550188303 78-79 2.8053656045968096E-4 6.23414578799291E-5 0.0 3.9743614520323005 0.0010286340550188303 80-81 2.8053656045968096E-4 6.23414578799291E-5 0.0 4.3891035859429985 0.001075390148428777 82-83 2.8053656045968096E-4 6.23414578799291E-5 0.0 4.813399548273797 0.0010909755128987594 84-85 2.8053656045968096E-4 6.23414578799291E-5 0.0 5.267634995751429 0.0010909755128987594 86-87 2.8053656045968096E-4 6.23414578799291E-5 0.0 5.766039366136993 0.0011065608773687416 88-89 2.8053656045968096E-4 6.23414578799291E-5 0.0 6.3108257811852235 0.0011533169707786885 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 2835 0.0 50.051315 1 GTATCAA 5125 0.0 42.965664 1 TCAACGC 6030 0.0 36.047295 4 CAACGCA 6245 0.0 34.725945 5 TATCAAC 6450 0.0 33.91971 2 AACGCAG 6625 0.0 33.15354 6 ATCAACG 6645 0.0 32.780464 3 ACGCAGA 8045 0.0 26.655565 7 GTACATG 9135 0.0 26.390797 1 CGCAGAG 8330 0.0 25.232557 8 TACATGG 9665 0.0 24.404251 2 ACATGGG 10275 0.0 21.84624 3 GCAGAGT 8995 0.0 21.6792 9 CATGGGG 8805 0.0 19.88939 4 GAGTACA 7270 0.0 19.583225 1 AGAGTAC 7695 0.0 18.251385 10-11 CAGAGTA 8530 0.0 18.050049 10-11 ATGGGGG 5400 0.0 18.01484 5 TATACCG 320 8.38736E-9 17.795145 5 AGTACAT 7555 0.0 17.211828 2 >>END_MODULE