##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921375_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3188397 Sequences flagged as poor quality 0 Sequence length 101 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.38172128502191 33.0 31.0 34.0 29.0 34.0 2 31.503894590290983 34.0 31.0 34.0 28.0 34.0 3 31.57637301753828 34.0 31.0 34.0 28.0 34.0 4 35.06911999979927 37.0 35.0 37.0 32.0 37.0 5 34.808926868266404 37.0 35.0 37.0 32.0 37.0 6 34.755296156658034 37.0 35.0 37.0 32.0 37.0 7 34.623836053038566 37.0 35.0 37.0 32.0 37.0 8 34.585035991440215 37.0 35.0 37.0 32.0 37.0 9 36.19882342129917 39.0 37.0 39.0 32.0 39.0 10-11 36.04795968005239 39.0 37.0 39.0 31.5 39.0 12-13 35.967463430683196 39.0 37.0 39.0 31.0 39.0 14-15 37.191691153893316 40.0 38.0 41.0 31.0 41.0 16-17 37.16224830220327 40.0 38.0 41.0 31.0 41.0 18-19 37.12376250510837 40.0 38.0 41.0 31.0 41.0 20-21 37.08276541472094 40.0 38.0 41.0 31.0 41.0 22-23 36.975109435870124 40.0 37.0 41.0 31.0 41.0 24-25 36.90048823907437 40.0 37.0 41.0 30.0 41.0 26-27 36.757825170454 40.0 37.0 41.0 30.0 41.0 28-29 36.60406122575074 40.0 37.0 41.0 30.0 41.0 30-31 36.46413166239964 40.0 36.5 41.0 30.0 41.0 32-33 36.41785621426692 40.0 36.5 41.0 30.0 41.0 34-35 36.55242430600706 40.0 37.0 41.0 30.0 41.0 36-37 36.53103926518561 40.0 37.0 41.0 30.0 41.0 38-39 36.44922464172435 40.0 37.0 41.0 30.0 41.0 40-41 36.32969592557012 40.0 36.0 41.0 29.5 41.0 42-43 36.22860986257358 40.0 36.0 41.0 29.0 41.0 44-45 36.09829892576113 40.0 36.0 41.0 28.5 41.0 46-47 35.94601252604365 40.0 35.5 41.0 28.0 41.0 48-49 35.79330397061595 40.0 35.0 41.0 27.5 41.0 50-51 35.63157991304094 39.5 35.0 41.0 27.0 41.0 52-53 35.455665809496125 39.0 35.0 41.0 27.0 41.0 54-55 35.24343471029486 39.0 35.0 41.0 26.0 41.0 56-57 34.97787869578349 39.0 35.0 41.0 26.0 41.0 58-59 34.745919971697376 38.0 35.0 40.0 26.0 41.0 60-61 34.45954424746981 38.0 34.0 40.0 25.5 41.0 62-63 34.14871156258145 37.0 34.0 40.0 25.0 41.0 64-65 33.83007574025443 37.0 34.0 40.0 24.0 41.0 66-67 33.49105302758721 36.0 34.0 39.0 23.0 41.0 68-69 33.12662256299953 36.0 33.5 39.0 22.5 40.5 70-71 32.746962031390694 35.0 33.0 38.5 22.0 40.0 72-73 32.35257231141542 35.0 33.0 37.0 21.5 39.5 74-75 31.949084916338837 35.0 33.0 37.0 20.0 39.0 76-77 29.217509300127933 33.0 28.5 34.5 13.0 36.5 78-79 30.87856813314026 34.5 31.5 35.5 17.5 37.0 80-81 31.08226829971299 35.0 32.0 35.0 18.0 37.0 82-83 30.93125228759154 35.0 32.0 35.0 17.5 37.0 84-85 30.717892094365915 35.0 32.0 35.0 15.0 36.0 86-87 30.48804273746337 35.0 32.0 35.0 10.5 36.0 88-89 30.221082882715045 35.0 32.0 35.0 6.0 35.5 90-91 30.046017795149098 34.5 31.0 35.0 2.0 35.0 92-93 29.907889450404074 34.0 31.0 35.0 2.0 35.0 94-95 29.81609786987003 34.0 31.0 35.0 2.0 35.0 96-97 29.632699754767053 34.0 31.0 35.0 2.0 35.0 98-99 29.37638568848233 34.0 31.0 35.0 2.0 35.0 100-101 28.294056072691074 33.0 29.0 34.5 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 62248.0 3 20857.0 4 11619.0 5 8104.0 6 7152.0 7 7042.0 8 7346.0 9 7968.0 10 8569.0 11 9275.0 12 10058.0 13 10366.0 14 11198.0 15 11977.0 16 12862.0 17 13652.0 18 13117.0 19 12198.0 20 11480.0 21 11348.0 22 11993.0 23 13640.0 24 16162.0 25 19576.0 26 23517.0 27 28482.0 28 33957.0 29 41004.0 30 50435.0 31 62424.0 32 80309.0 33 105886.0 34 157826.0 35 232647.0 36 397968.0 37 773152.0 38 781351.0 39 89631.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.120563626614796 18.609045051870574 12.681473188974609 26.58891813254002 2 15.552414293626931 20.926732208709986 37.21622789712413 26.304625600538955 3 18.199151937655277 25.062378281975867 28.665780693800187 28.072689086568666 4 13.554697546624178 16.458193497393562 34.47585830515704 35.51125065082522 5 14.373623546684906 37.792529662372864 33.48588566731712 14.347961123625117 6 34.07602329093438 34.40446749352725 17.115794458915463 14.40371475662291 7 29.30806500580857 31.75948879560606 20.667251705561927 18.265194493023444 8 27.540216055936302 34.39992773671323 19.582315693333932 18.47754051401654 9 28.088817045054306 14.977839961585712 18.52796248396922 38.40538050939077 10-11 26.367373695307133 24.901524542769813 27.24328841861437 21.487813343308684 12-13 26.90511329162885 22.315770061126532 27.133441946263414 23.6456747009812 14-15 24.216930673426994 23.751779016892723 24.275364762174355 27.755925547505928 16-17 24.409600698533712 26.65682994536746 25.06590310542019 23.867666250678635 18-19 24.467207253320485 26.294259042500475 26.213120862329177 23.025412841849864 20-21 24.856305976843355 25.381448588809587 26.207669619479784 23.554575814867274 22-23 24.783679906008945 25.0492999833615 25.90148597010684 24.265534140522714 24-25 24.540497851234278 25.335566259830344 25.76693466384723 24.357001225088148 26-27 24.15114040147326 25.678094988970635 25.921296161254233 24.249468448301872 28-29 24.25942593365411 26.16130711340353 25.507753548217316 24.07151340472504 30-31 24.88705397396701 25.510345079615483 25.490990745836662 24.11161020058085 32-33 24.505811500538126 25.598128299386776 25.446210251692097 24.449849948382997 34-35 24.763230411400198 25.756528749080545 25.607548897981975 23.872691941537287 36-37 24.629935835471837 25.771900089262022 25.83534951758989 23.76281455767625 38-39 24.70398484502771 25.79037869396569 25.57745007868385 23.928186382322753 40-41 24.72269122112468 25.527117999217747 25.582666009667427 24.16752476999015 42-43 24.409386580078703 25.545351720728732 25.38155643785722 24.66370526133534 44-45 24.207093348681948 25.613467466404654 25.6523147207883 24.5271244641251 46-47 24.350559781811736 25.495154203676357 25.48593233058533 24.668353683926572 48-49 24.162080216711722 25.726486772015427 25.648005309888855 24.463427701383996 50-51 24.379309928422117 25.507891508248136 25.83649328752491 24.276305275804837 52-53 24.54488913366939 25.30395089112091 25.690844526186634 24.460315449023067 54-55 23.75906499952013 25.30294552500626 26.119587424514528 24.818402050959083 56-57 24.06897164975252 25.433750647111065 25.62181864830986 24.87545905482656 58-59 24.214363302335602 25.495023184779065 25.755634342016815 24.534979170868514 60-61 24.518182713546278 25.410066941895238 25.924050339100752 24.147700005457732 62-63 24.267970380966272 25.374637486805224 25.95367046080152 24.403721671426982 64-65 23.908398670971266 25.122627686843686 25.988708275682477 24.98026536650258 66-67 24.03999606552871 25.487859536237533 25.633347122808058 24.838797275425698 68-69 23.861437281463424 25.46982569779157 25.75849672090235 24.910240299842652 70-71 23.848011703475354 25.257307808461487 25.75221107045225 25.142469417610908 72-73 23.824379176489355 25.713253128842574 25.506182549319455 24.956185145348613 74-75 23.74436257224817 25.645339600906507 25.60386670447957 25.00643112236575 76-77 23.63349242373988 25.16600430521842 25.702411758584574 25.498091512457123 78-79 23.545768185694996 25.288726277524038 25.872981623050084 25.292523913730886 80-81 23.887385758989595 25.549160192852504 25.454092718324127 25.109361329833767 82-83 23.75343680598243 25.573946010873865 25.592736785325126 25.079880397818577 84-85 23.66045727283423 25.635781795364526 25.434487626965762 25.269273304835483 86-87 23.37144823005544 25.895377810199367 25.349377834055183 25.38379612569001 88-89 23.184552499492536 25.582843336182883 25.571742831172795 25.660861333151786 90-91 23.43798669365775 25.33446768023751 25.68646026503193 25.541085361072813 92-93 23.597486056878928 25.20471641259934 25.615945718359228 25.581851812162505 94-95 23.430520472092592 25.30113490853312 25.55886407836573 25.70948054100856 96-97 23.0511455491365 25.202143736759265 25.709236097736632 26.037474616367607 98-99 22.746633650712003 25.17799525304173 25.6323200895759 26.443051006670366 100-101 22.810658533739645 25.402950611537733 25.598945036250658 26.187445818471964 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 127.0 1 107.0 2 106.0 3 131.0 4 123.0 5 146.5 6 228.5 7 432.5 8 618.0 9 630.0 10 541.5 11 442.0 12 445.0 13 496.5 14 535.5 15 562.0 16 585.5 17 643.5 18 744.5 19 840.0 20 879.0 21 934.5 22 1090.5 23 1305.0 24 1545.5 25 1852.5 26 2316.5 27 3100.0 28 4297.0 29 6197.5 30 9339.0 31 13924.5 32 20589.5 33 26199.0 34 31043.0 35 38015.5 36 46443.5 37 54861.0 38 62745.0 39 71046.0 40 78699.5 41 85428.0 42 91909.5 43 99591.5 44 108123.5 45 117349.5 46 125639.0 47 133355.0 48 141414.5 49 147067.0 50 149985.5 51 150860.5 52 150100.0 53 148860.0 54 146029.5 55 138635.0 56 128141.0 57 115616.0 58 102928.0 59 89073.0 60 73868.5 61 61344.5 62 50367.5 63 38781.0 64 28165.5 65 20677.0 66 15581.0 67 11856.5 68 8988.0 69 6766.0 70 4982.0 71 3607.0 72 2578.0 73 1852.5 74 1372.0 75 953.5 76 658.0 77 411.0 78 229.5 79 135.5 80 76.0 81 52.5 82 38.5 83 22.5 84 17.0 85 14.0 86 10.5 87 9.0 88 7.5 89 6.5 90 3.5 91 3.5 92 2.5 93 2.5 94 2.5 95 0.5 96 0.0 97 1.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.15054586991519564 2 3.4500095188899E-4 3 0.005896379905011829 4 0.004296830037162875 5 0.026878710524442222 6 0.0010036391327679708 7 1.5681861449499544E-4 8 0.001756368482343949 9 0.0 10-11 0.10075595981303458 12-13 3.2931909043949043E-4 14-15 0.005943425489360328 16-17 1.2545489159599636E-4 18-19 2.822735060909918E-4 20-21 7.840930724749772E-4 22-23 2.6659164464149226E-4 24-25 0.0017250047594449499 26-27 0.002822735060909918 28-29 0.006633427393138307 30-31 0.015070268852969063 32-33 0.015493679112105552 34-35 0.011980942147417652 36-37 9.722754098689719E-4 38-39 1.411367530454959E-4 40-41 0.005143650555435851 42-43 0.008499568905628753 44-45 0.008452523321280256 46-47 0.010177528080725206 48-49 0.012012305870316651 50-51 0.006006152935158326 52-53 0.001662277313646952 54-55 0.0010977303014649681 56-57 0.005912061766461329 58-59 0.009848208990285713 60-61 0.008123204230840765 62-63 0.01825368672721747 64-65 0.034719641249191996 66-67 0.03711896605096542 68-69 0.026925756108790715 70-71 0.041070795136239305 72-73 0.02623575420501274 74-75 0.024244157800926296 76-77 0.23855247636978705 78-79 0.06914132713084349 80-81 0.05372605732598544 82-83 0.020778466420586898 84-85 0.03205372480277707 86-87 0.08126340603130663 88-89 0.2622477690199809 90-91 0.31561314353262787 92-93 0.05051127572883804 94-95 0.005222059862683349 96-97 0.01000502760478071 98-99 0.001238867054510464 100-101 0.0012859126388589626 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 3188397.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 55.090432613940365 #Duplication Level Percentage of deduplicated Percentage of total 1 75.07037376686122 41.356593673065845 2 13.18791338190202 14.530557069683109 3 4.700334511322633 7.768303849769935 4 2.1592405470501133 4.758139834182079 5 1.230193800302356 3.3885954328822083 6 0.7880655089691548 2.60489218903415 7 0.5464856629500026 2.107429211246215 8 0.37687265432923367 1.660966205388919 9 0.29131209907158906 1.4443658607176009 >10 1.5568533108665725 14.991227150456602 >50 0.07054883205654157 2.5967547603514496 >100 0.01986701798612419 1.8630397034419772 >500 0.0013116131079638899 0.4882082447185937 >1k 6.272932245641423E-4 0.4409268150614068 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 3.136372289899909E-5 5 0.0 0.0 0.0 0.0 3.136372289899909E-5 6 0.0 0.0 0.0 0.0 3.136372289899909E-5 7 0.0 0.0 0.0 0.0 3.136372289899909E-5 8 0.0 0.0 0.0 0.0 6.272744579799818E-5 9 0.0 0.0 0.0 6.272744579799818E-5 6.272744579799818E-5 10-11 0.0 0.0 0.0 6.272744579799818E-5 6.272744579799818E-5 12-13 0.0 0.0 0.0 6.272744579799818E-5 1.0977303014649681E-4 14-15 0.0 4.704558434849863E-5 0.0 6.272744579799818E-5 2.3522792174249317E-4 16-17 0.0 6.272744579799818E-5 0.0 6.272744579799818E-5 3.606828133384895E-4 18-19 0.0 7.840930724749772E-5 0.0 6.272744579799818E-5 3.7636467478798907E-4 20-21 0.0 9.409116869699727E-5 0.0 7.840930724749772E-5 4.3909212058598724E-4 22-23 0.0 9.409116869699727E-5 0.0 1.5681861449499544E-4 4.861377049344859E-4 24-25 0.0 1.0977303014649681E-4 0.0 3.136372289899909E-4 5.645470121819836E-4 26-27 0.0 1.2545489159599636E-4 0.0 0.0010506847171164696 6.586381808789809E-4 28-29 0.0 1.2545489159599636E-4 0.0 0.0038734197780263876 6.586381808789809E-4 30-31 0.0 1.2545489159599636E-4 0.0 0.015446633527757051 6.743200423284804E-4 32-33 0.0 1.2545489159599636E-4 0.0 0.044520804655129205 7.527293495759781E-4 34-35 0.0 1.5681861449499544E-4 0.0 0.0830668200979991 7.527293495759781E-4 36-37 0.0 1.8818233739399453E-4 0.0 0.138533564044879 7.527293495759781E-4 38-39 0.0 2.1954606029299362E-4 0.0 0.22434470989654048 7.840930724749772E-4 40-41 0.0 2.3522792174249317E-4 0.0 0.32746863078844946 8.781842411719745E-4 42-43 0.0 2.509097831919927E-4 0.0 0.4365202953082693 8.781842411719745E-4 44-45 0.0 2.509097831919927E-4 0.0 0.5761202259317142 9.409116869699727E-4 46-47 1.5681861449499544E-5 2.509097831919927E-4 0.0 0.7308061072695777 0.0010193209942174703 48-49 3.136372289899909E-5 2.509097831919927E-4 0.0 0.8858997170051283 0.00103500285566697 50-51 3.136372289899909E-5 2.509097831919927E-4 0.0 1.0483638016219436 0.001066366578565969 52-53 3.136372289899909E-5 2.509097831919927E-4 0.0 1.221695416223262 0.0011290940243639672 54-55 3.136372289899909E-5 2.509097831919927E-4 0.0 1.4288998515554996 0.0011918214701619654 56-57 3.136372289899909E-5 2.509097831919927E-4 0.0 1.6647864114788717 0.0012075033316114648 58-59 3.136372289899909E-5 2.509097831919927E-4 0.0 1.913704598266778 0.0012388670545104641 60-61 3.136372289899909E-5 2.822735060909918E-4 0.0 2.178602601871724 0.0012859126388589626 62-63 3.136372289899909E-5 2.822735060909918E-4 0.0 2.4554658657626387 0.0013172763617579617 64-65 3.136372289899909E-5 2.822735060909918E-4 0.0 2.765417857311997 0.0013486400846569608 66-67 3.136372289899909E-5 3.7636467478798907E-4 0.0 3.1277629479641336 0.0013486400846569608 68-69 3.136372289899909E-5 3.7636467478798907E-4 0.0 3.516406520267081 0.0013486400846569608 70-71 3.136372289899909E-5 3.920465362374886E-4 0.0 3.917297626362087 0.001411367530454959 72-73 3.136372289899909E-5 4.0772839768698815E-4 0.0 4.338261515112453 0.0015681861449499544 74-75 3.136372289899909E-5 4.0772839768698815E-4 0.0 4.788519121050484 0.0015681861449499544 76-77 3.136372289899909E-5 4.0772839768698815E-4 0.0 5.302209856551741 0.0015681861449499544 78-79 3.136372289899909E-5 4.0772839768698815E-4 0.0 5.8662236854444405 0.0015681861449499544 80-81 3.136372289899909E-5 4.0772839768698815E-4 0.0 6.438235263676386 0.001646595452197452 82-83 3.136372289899909E-5 4.0772839768698815E-4 0.0 7.029896214304555 0.0019131870968389444 84-85 3.136372289899909E-5 4.0772839768698815E-4 0.0 7.654018618133187 0.0019131870968389444 86-87 3.136372289899909E-5 4.0772839768698815E-4 0.0 8.337151866596287 0.001928868958288444 88-89 3.136372289899909E-5 4.0772839768698815E-4 0.0 9.077978683332095 0.001975914542636943 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 2885 0.0 53.53675 1 GTATCAA 5420 0.0 44.80599 1 TCAACGC 7275 0.0 33.203636 4 CAACGCA 7350 0.0 32.861603 5 TATCAAC 7420 0.0 32.81061 2 ATCAACG 7490 0.0 32.31389 3 AACGCAG 7795 0.0 30.86022 6 GTACATG 12520 0.0 30.366875 1 TACATGG 13120 0.0 28.61169 2 ACATGGG 13695 0.0 27.063868 3 ACGCAGA 9545 0.0 24.9034 7 CATGGGG 11075 0.0 24.89621 4 CGCAGAG 9915 0.0 23.542542 8 ATGGGGG 7485 0.0 23.248857 5 GCAGAGT 11105 0.0 19.607016 9 TGGGGGG 7195 0.0 18.236557 6 AGAGTAC 9640 0.0 17.877037 10-11 GTATACG 190 1.859741E-4 17.508902 1 GTGGTAT 1515 0.0 17.252996 1 TAAGTAC 3100 0.0 17.170021 1 >>END_MODULE