##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921370_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3035979 Sequences flagged as poor quality 0 Sequence length 101 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.570574104761594 31.0 31.0 34.0 27.0 34.0 2 30.63314041368534 33.0 31.0 34.0 27.0 34.0 3 30.685861792851664 33.0 31.0 34.0 27.0 34.0 4 34.15653303267249 37.0 35.0 37.0 30.0 37.0 5 34.14959721394647 37.0 35.0 37.0 30.0 37.0 6 34.191614302997486 37.0 35.0 37.0 30.0 37.0 7 34.11320401096319 37.0 35.0 37.0 30.0 37.0 8 34.07900845163949 37.0 35.0 37.0 30.0 37.0 9 35.65500321313158 39.0 37.0 39.0 30.0 39.0 10-11 35.55103312638197 39.0 37.0 39.0 30.0 39.0 12-13 35.43985169199128 39.0 37.0 39.0 30.0 39.0 14-15 36.59328704184054 40.0 37.0 41.0 30.0 41.0 16-17 36.54255546563398 40.0 37.0 41.0 29.5 41.0 18-19 36.488999594529474 40.0 37.0 41.0 29.0 41.0 20-21 36.42728194101474 40.0 37.0 41.0 29.0 41.0 22-23 36.31052652208727 40.0 37.0 41.0 28.0 41.0 24-25 36.211005247401246 40.0 36.5 41.0 28.0 41.0 26-27 36.063004388370274 40.0 36.0 41.0 27.0 41.0 28-29 35.919730999456846 40.0 36.0 41.0 27.0 41.0 30-31 35.77688399689194 40.0 36.0 41.0 27.0 41.0 32-33 35.59693413557867 40.0 35.5 41.0 26.0 41.0 34-35 35.433879153973066 39.0 35.0 41.0 25.0 41.0 36-37 35.26005351156908 39.0 35.0 41.0 25.0 41.0 38-39 35.4943057906527 39.5 35.0 41.0 25.5 41.0 40-41 35.61479806019739 40.0 35.5 41.0 26.0 41.0 42-43 35.45361331550713 40.0 35.0 41.0 25.0 41.0 44-45 35.333374835596686 40.0 35.0 41.0 24.5 41.0 46-47 35.18123774900946 40.0 35.0 41.0 24.0 41.0 48-49 35.03305852906097 39.5 35.0 41.0 23.5 41.0 50-51 33.30017467182744 37.0 32.5 39.5 20.5 40.0 52-53 33.46037044393258 37.5 33.5 39.5 21.0 40.0 54-55 34.31993699561163 39.0 34.0 40.5 22.0 41.0 56-57 34.32172060478679 39.0 34.0 41.0 22.0 41.0 58-59 34.135138451221174 38.0 34.0 41.0 21.0 41.0 60-61 33.8842865843275 38.0 34.0 40.0 20.0 41.0 62-63 33.586533701320064 37.0 34.0 40.0 19.0 41.0 64-65 33.28866092288517 37.0 33.5 40.0 18.0 41.0 66-67 32.936557696874715 36.0 33.0 39.0 16.0 41.0 68-69 32.569121196161106 36.0 33.0 39.0 13.0 41.0 70-71 32.181813016493194 35.0 33.0 38.5 9.5 40.5 72-73 31.820469113916793 35.0 32.5 37.5 7.0 40.0 74-75 31.426934771287943 35.0 32.0 37.0 4.0 39.0 76-77 31.05067344009955 35.0 32.0 36.5 2.0 39.0 78-79 30.70702695901388 35.0 32.0 36.0 2.0 38.0 80-81 30.3628216795966 35.0 31.0 35.5 2.0 37.0 82-83 30.071916670042846 35.0 31.0 35.0 2.0 37.0 84-85 29.842519826388788 35.0 31.0 35.0 2.0 36.0 86-87 29.622756942653425 35.0 31.0 35.0 2.0 36.0 88-89 29.42488683222117 35.0 31.0 35.0 2.0 36.0 90-91 29.169089608327333 35.0 31.0 35.0 2.0 35.0 92-93 28.977722177920203 34.5 30.0 35.0 2.0 35.0 94-95 28.76634044570137 34.0 30.0 35.0 2.0 35.0 96-97 28.506069870707275 34.0 30.0 35.0 2.0 35.0 98-99 28.268698992977225 34.0 30.0 35.0 2.0 35.0 100-101 27.21679711882065 33.5 27.5 35.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 93792.0 3 16570.0 4 11664.0 5 8894.0 6 8299.0 7 8556.0 8 9036.0 9 9674.0 10 10280.0 11 11034.0 12 11188.0 13 11488.0 14 12165.0 15 13084.0 16 13022.0 17 13460.0 18 12600.0 19 11966.0 20 12200.0 21 12943.0 22 14075.0 23 16256.0 24 19556.0 25 22730.0 26 27062.0 27 32280.0 28 38163.0 29 45057.0 30 53721.0 31 65315.0 32 81731.0 33 106827.0 34 150491.0 35 220581.0 36 370144.0 37 665387.0 38 680012.0 39 114668.0 40 8.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.56654271564775 17.72774187255234 13.048107582981494 24.657607828818414 2 16.228780770107925 19.333211612918536 38.720538276676216 25.71746934029732 3 19.363234477542836 23.321673194257478 29.001286844364333 28.31380548383536 4 13.989106767454498 15.544557816291467 35.532588245103334 34.9337471711507 5 14.942359422931863 36.66588566922419 33.64764361208351 14.744111295760437 6 34.171248604005314 34.19493521596326 16.927724536892143 14.706091643139283 7 29.591760092345154 31.433590023349833 20.456731656151337 18.517918228153675 8 27.047873882516654 34.050758518174916 19.8322984313064 19.069069168002024 9 27.053797717524837 15.603304881186563 19.27640905333715 38.06648834795145 10-11 26.088070218440972 24.900488513926668 27.305121555232255 21.70631971240011 12-13 26.44717164951392 22.381035846650228 27.216170776089317 23.955621727746536 14-15 23.85121601157562 24.010295076424683 24.388031652367676 27.75045725963203 16-17 24.070970267226606 26.917843288298055 25.3008630352456 23.710323409229737 18-19 24.086888910486927 26.373978463094534 26.525135449904543 23.013997176514 20-21 24.573073487057574 25.546203841090737 26.449123578099098 23.431599093752588 22-23 24.507315767889118 25.293603668783327 26.110703127999287 24.08837743532827 24-25 24.311981626042513 25.557084155756854 26.04134469952846 24.08958951867217 26-27 24.071295412176603 25.708081029734757 26.112326912976926 24.108296645111718 28-29 24.149702670202778 25.999604658441367 25.842258718104993 24.00843395325086 30-31 24.518399436017464 25.582603510725388 25.78772250873399 24.11127454452316 32-33 24.22764583842559 25.613591008724974 25.759935091416875 24.39882806143256 34-35 24.551300507105207 25.684562378815563 25.805590345697247 23.958546768381986 36-37 24.54530332600443 25.600714773915694 25.816332748668035 24.037649151411845 38-39 24.445678621327797 25.667596087505558 25.78369545828946 24.103029832877187 40-41 24.554202723254388 25.466582209349397 25.82343413860948 24.155780928786736 42-43 24.384774033028904 25.502417004835 25.672286458023034 24.44052250411306 44-45 24.28114963260977 25.568492117782665 25.784006158863974 24.366352090743586 46-47 24.516699307197918 25.523256399141914 25.568896491537522 24.391147802122642 48-49 24.22246664343455 25.59586745550258 25.682162883527905 24.49950301753497 50-51 24.294395339908093 25.64571837391119 25.803869649029572 24.256016637151145 52-53 24.579224082327087 25.480466588817162 25.73323822427225 24.2070711045835 54-55 24.07834150806974 25.32227315642726 25.97911209921489 24.620273236288106 56-57 24.14113413990969 25.482553039249144 25.784986167979017 24.59132665286215 58-59 24.244668945412734 25.428238475605347 25.859868007863952 24.467224571117967 60-61 24.265359296570725 25.350213761215514 26.02493911101672 24.35948783119704 62-63 24.319372907062302 25.33340550099068 26.022271093074327 24.32495049887268 64-65 24.105534362513723 25.15309238448206 26.010845388119247 24.730527864884966 66-67 24.090489530659234 25.349024776675293 25.86853996843143 24.691945724234042 68-69 24.14987313066139 25.289469663394478 25.89563417014186 24.665023035802268 70-71 24.087086564421174 25.089321139542577 25.947797223649705 24.87579507238654 72-73 24.086921529706203 25.295450079499993 25.837274235122976 24.78035415567083 74-75 23.977075361359045 25.432064301443457 25.91534474813635 24.675515589061153 76-77 24.050093059145556 25.03308338828671 25.95408928167513 24.962734270892607 78-79 23.99910422716324 25.03610816077439 26.05619670828237 24.908590903780002 80-81 24.137513875928487 25.242752416466335 25.829857268147798 24.78987643945738 82-83 24.04004415756441 25.240200415532648 25.89219949594097 24.82755593096197 84-85 24.048375981263252 25.302382888722835 25.886833579336766 24.76240755067715 86-87 23.882759251318223 25.4088524928935 25.869755462617906 24.83863279317037 88-89 23.878776495070582 25.06909568785139 25.96421598490879 25.087911832169237 90-91 23.905118042915213 24.974515749728816 26.046900923705042 25.073465283650933 92-93 24.002134563320702 24.92739810728343 26.142871149425705 24.927596179970163 94-95 23.92221327858861 24.838981579122873 26.138651486407692 25.10015365588082 96-97 23.823434491171973 24.76973502297491 26.200081053932227 25.206749431920887 98-99 23.73130209177561 24.727126331520832 26.127090479867448 25.414481096836106 100-101 23.943699637636122 24.55529907854816 26.22449062131101 25.27651066250471 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 63.0 1 59.5 2 66.0 3 99.5 4 107.5 5 114.5 6 206.0 7 387.0 8 567.0 9 656.5 10 590.0 11 486.0 12 509.0 13 597.5 14 665.0 15 719.5 16 813.0 17 916.0 18 1017.5 19 1124.5 20 1234.0 21 1333.0 22 1430.5 23 1560.5 24 1749.0 25 2071.5 26 2560.0 27 3307.5 28 4483.5 29 6554.5 30 9851.0 31 14636.0 32 21133.5 33 26835.5 34 32151.5 35 38925.0 36 47260.0 37 55859.5 38 64069.5 39 71995.0 40 78682.5 41 84372.0 42 91105.5 43 99221.5 44 106663.0 45 115118.0 46 120586.0 47 124968.5 48 131154.5 49 134161.5 50 134370.5 51 133608.5 52 132621.5 53 132036.5 54 130329.5 55 124754.5 56 115415.5 57 104182.0 58 94683.5 59 84388.5 60 71115.5 61 59078.0 62 49275.5 63 38829.5 64 28800.5 65 21746.5 66 16798.0 67 13306.0 68 10414.0 69 8243.0 70 6561.5 71 4915.5 72 3645.0 73 2867.5 74 2389.0 75 1905.5 76 1445.5 77 988.0 78 626.0 79 437.5 80 314.5 81 211.5 82 163.5 83 141.5 84 110.0 85 85.5 86 71.0 87 57.5 88 49.0 89 42.0 90 38.0 91 39.5 92 28.5 93 15.0 94 14.5 95 15.5 96 11.0 97 6.5 98 6.5 99 5.0 100 5.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.04766172625041214 2 0.056093932138529284 3 0.046904145252651616 4 0.053294176277240396 5 0.04604774934213972 6 0.016765596863482918 7 0.013537643046938072 8 0.019334784595018608 9 0.01943359950776998 10-11 0.021442836067047895 12-13 0.026350643400366074 14-15 0.04362678397973108 16-17 0.028886892827651313 18-19 0.0238473322773313 20-21 0.027190570158752744 22-23 0.04622891001551724 24-25 0.04113994200882154 26-27 0.031126697516682428 28-29 0.020718193373537825 30-31 0.013965841002194019 32-33 0.010704948881398718 34-35 0.010441442447395059 36-37 0.0017786684295247102 38-39 0.007164081174474527 40-41 0.004150226335557657 42-43 0.20749484762575765 44-45 0.18280758859003965 46-47 0.18934584198375548 48-49 0.18745188948935418 50-51 0.18618376477571155 52-53 0.19016929959001694 54-55 0.18801184066161195 56-57 0.19937555562801984 58-59 0.1959829102902227 60-61 0.20024842069065696 62-63 0.19754747974211942 64-65 0.19853562886963314 66-67 0.18939524944013117 68-69 0.18761658101060646 70-71 0.17132858955875518 72-73 0.18035368492338055 74-75 0.17920084427461455 76-77 0.17719160771533662 78-79 0.2039869182230839 80-81 0.21251793902395238 82-83 0.20993228214029147 84-85 0.2045798076995921 86-87 0.22095014491206955 88-89 0.2195502669814251 90-91 0.21927029139529622 92-93 0.22358520925210615 94-95 0.23494892421851402 96-97 0.23489951676213833 98-99 0.22496861803062537 100-101 0.23443838050263194 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 3035979.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 59.527062745439565 #Duplication Level Percentage of deduplicated Percentage of total 1 79.09680380675978 47.08400403168713 2 11.568689591577902 13.773002224007428 3 3.6339828749420398 6.48960979837583 4 1.730989519777848 4.12162887022057 5 0.9821558216982664 2.9232425612015724 6 0.6272273520510862 2.2402201164720554 7 0.43162235478974587 1.7985247697132505 8 0.3163118723798402 1.5063293339425776 9 0.2288260427434575 1.2259207983762388 >10 1.2989624586433353 13.520061852517395 >50 0.06234259884946513 2.5002516832508817 >100 0.020583321385639303 2.08253228353183 >500 0.001168521201230878 0.49091834631560943 >1k 3.3386320024868173E-4 0.2437533303876014 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 6.587660850091519E-5 2 0.0 0.0 0.0 0.0 6.587660850091519E-5 3 0.0 0.0 0.0 0.0 9.881491275137278E-5 4 0.0 0.0 0.0 0.0 9.881491275137278E-5 5 0.0 0.0 0.0 0.0 1.3175321700183037E-4 6 0.0 0.0 0.0 0.0 1.3175321700183037E-4 7 0.0 0.0 0.0 0.0 1.3175321700183037E-4 8 0.0 0.0 0.0 0.0 1.3175321700183037E-4 9 0.0 0.0 0.0 0.0 1.3175321700183037E-4 10-11 0.0 0.0 0.0 0.0 1.4822236912705918E-4 12-13 0.0 0.0 0.0 0.0 2.4703728187843197E-4 14-15 0.0 0.0 0.0 0.0 3.4585219462980474E-4 16-17 0.0 0.0 0.0 3.2938304250457594E-5 4.6113625950640634E-4 18-19 0.0 0.0 0.0 3.2938304250457594E-5 4.6113625950640634E-4 20-21 0.0 0.0 0.0 3.2938304250457594E-5 5.599511722577792E-4 22-23 0.0 0.0 0.0 4.940745637568639E-5 6.917043892596095E-4 24-25 0.0 0.0 0.0 3.952596510054912E-4 7.575809977605247E-4 26-27 0.0 0.0 0.0 7.575809977605247E-4 7.575809977605247E-4 28-29 0.0 0.0 0.0 0.0024868419709095486 7.575809977605247E-4 30-31 0.0 0.0 0.0 0.010095590252765253 7.575809977605247E-4 32-33 0.0 0.0 0.0 0.028656324697898108 7.575809977605247E-4 34-35 0.0 0.0 0.0 0.055303412836518295 7.905193020109822E-4 36-37 0.0 0.0 0.0 0.0983702456439916 8.234576062614399E-4 38-39 0.0 0.0 0.0 0.16437860736190862 8.563959105118975E-4 40-41 0.0 0.0 0.0 0.24176715319835876 8.563959105118975E-4 42-43 0.0 0.0 0.0 0.32482108736588755 8.893342147623551E-4 44-45 0.0 0.0 0.0 0.43312223174139214 9.552108232632702E-4 46-47 0.0 0.0 0.0 0.5551257106850871 0.0010046182796389566 48-49 0.0 0.0 0.0 0.6856272721254001 0.0010210874317641856 50-51 0.0 0.0 0.0 0.8205260971831492 0.001054025736014643 52-53 0.0 0.0 0.0 0.9646476474310264 0.001054025736014643 54-55 0.0 0.0 0.0 1.1372278925512989 0.001054025736014643 56-57 0.0 0.0 0.0 1.3408524894276277 0.001070494888139872 58-59 0.0 0.0 0.0 1.5533374901473298 0.0010869640402651007 60-61 0.0 0.0 0.0 1.7790636891757157 0.0010869640402651007 62-63 0.0 0.0 0.0 2.0092530284300385 0.0011528406487660158 64-65 0.0 0.0 0.0 2.274521661711099 0.001218717257266931 66-67 0.0 0.0 0.0 2.5928044956832705 0.001301063017893075 68-69 0.0 0.0 0.0 2.931640831507728 0.0013504704742687615 70-71 0.0 0.0 0.0 3.290207211578209 0.0014163470827696766 72-73 0.0 0.0 0.0 3.660022022550222 0.0015151619955210494 74-75 0.0 0.0 0.0 4.054820537296207 0.0015316311476462783 76-77 0.0 0.0 0.0 4.508858592236639 0.0016139769082724222 78-79 0.0 0.0 0.0 5.016092008541561 0.0016139769082724222 80-81 0.0 3.2938304250457594E-5 0.0 5.540173367470592 0.001630446060397651 82-83 0.0 3.2938304250457594E-5 0.0 6.079603976180336 0.0017292609731490239 84-85 0.0 4.940745637568639E-5 0.0 6.649683676995131 0.0017621992773994813 86-87 0.0 6.587660850091519E-5 0.0 7.284734182943954 0.001795137581649939 88-89 0.0 6.587660850091519E-5 0.0 7.96906039205146 0.0018116067337751677 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 2575 0.0 50.677536 1 GTATCAA 4560 0.0 42.561657 1 TCAACGC 5740 0.0 34.06567 4 CAACGCA 5905 0.0 33.107246 5 ATCAACG 6000 0.0 32.58788 3 AACGCAG 6360 0.0 30.806225 6 TATCAAC 6260 0.0 30.551582 2 GTACATG 9035 0.0 27.573456 1 TACATGG 9240 0.0 26.19396 2 ACGCAGA 7560 0.0 25.03989 7 ACATGGG 9850 0.0 23.94585 3 CGCAGAG 7690 0.0 23.940697 8 CATGGGG 8525 0.0 21.211052 4 GCAGAGT 8550 0.0 19.979055 9 GAGTACA 6945 0.0 18.92638 1 ATGGGGG 5180 0.0 18.687283 5 GTATAAC 745 0.0 18.471483 1 AGAGTAC 7125 0.0 18.41418 10-11 GTGGTAT 1340 0.0 17.352072 1 TCTATAC 830 0.0 17.153522 3 >>END_MODULE