##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921365_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3004624 Sequences flagged as poor quality 0 Sequence length 101 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.54101844357231 31.0 31.0 34.0 27.0 34.0 2 30.596813112056616 33.0 31.0 34.0 27.0 34.0 3 30.641922583324902 33.0 31.0 34.0 26.0 34.0 4 34.10821520429844 37.0 35.0 37.0 30.0 37.0 5 34.103714141935896 37.0 35.0 37.0 30.0 37.0 6 34.15204764389821 37.0 35.0 37.0 30.0 37.0 7 34.075677688789014 37.0 35.0 37.0 30.0 37.0 8 34.044664490465365 37.0 35.0 37.0 30.0 37.0 9 35.617284891553815 39.0 37.0 39.0 30.0 39.0 10-11 35.5177812598182 39.0 37.0 39.0 30.0 39.0 12-13 35.40855927397239 39.0 37.0 39.0 30.0 39.0 14-15 36.56012865503304 40.0 37.0 41.0 29.5 41.0 16-17 36.504033449776074 40.0 37.0 41.0 29.0 41.0 18-19 36.46153179233075 40.0 37.0 41.0 29.0 41.0 20-21 36.40604232010395 40.0 37.0 41.0 29.0 41.0 22-23 36.29090511824441 40.0 37.0 41.0 28.0 41.0 24-25 36.1910621761658 40.0 36.5 41.0 27.0 41.0 26-27 36.04653860183504 40.0 36.0 41.0 27.0 41.0 28-29 35.90809498958938 40.0 36.0 41.0 27.0 41.0 30-31 35.768687030390495 40.0 36.0 41.0 27.0 41.0 32-33 35.59253454009553 40.0 35.5 41.0 26.0 41.0 34-35 35.43489518156016 39.5 35.0 41.0 25.0 41.0 36-37 35.26716437730644 39.0 35.0 41.0 25.0 41.0 38-39 35.494072802453815 39.5 35.5 41.0 25.5 41.0 40-41 35.62129637518704 40.0 36.0 41.0 26.0 41.0 42-43 35.45741763362071 40.0 35.0 41.0 25.0 41.0 44-45 35.34130443609583 40.0 35.0 41.0 24.0 41.0 46-47 35.198796088961544 40.0 35.0 41.0 24.0 41.0 48-49 35.056940735346586 40.0 35.0 41.0 23.0 41.0 50-51 33.352099630436285 37.0 32.5 39.5 20.0 40.0 52-53 33.51354761860386 37.5 33.5 39.5 21.0 40.0 54-55 34.37411003839415 39.0 34.0 40.5 22.0 41.0 56-57 34.389550905537604 39.0 34.0 41.0 22.0 41.0 58-59 34.21156341026365 38.5 34.0 41.0 21.0 41.0 60-61 33.96971068592942 38.0 34.0 40.5 20.0 41.0 62-63 33.688207076825584 37.5 34.0 40.0 18.5 41.0 64-65 33.40137118654447 37.0 34.0 40.0 18.0 41.0 66-67 33.06792929830821 36.5 33.0 39.5 15.5 41.0 68-69 32.7058966446384 36.0 33.0 39.0 13.0 41.0 70-71 32.328391505892256 35.5 33.0 39.0 9.5 41.0 72-73 31.972977983268457 35.0 33.0 37.5 7.5 40.0 74-75 31.576997321461853 35.0 32.0 37.0 4.5 39.0 76-77 31.197146797735755 35.0 32.0 37.0 2.0 39.0 78-79 30.85131300954795 35.0 32.0 36.0 2.0 39.0 80-81 30.505012108004195 35.0 31.5 36.0 2.0 37.0 82-83 30.204100246819568 35.0 31.0 35.0 2.0 37.0 84-85 29.969134906730424 35.0 31.0 35.0 2.0 36.5 86-87 29.744274657993813 35.0 31.0 35.0 2.0 36.0 88-89 29.543966233378953 35.0 31.0 35.0 2.0 36.0 90-91 29.294182733014182 35.0 31.0 35.0 2.0 35.5 92-93 29.10715384021428 35.0 31.0 35.0 2.0 35.0 94-95 28.904148905154187 34.0 30.0 35.0 2.0 35.0 96-97 28.65488077709557 34.0 30.0 35.0 2.0 35.0 98-99 28.42744216913664 34.0 30.0 35.0 2.0 35.0 100-101 27.38163910026679 33.5 27.5 35.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 96540.0 3 16524.0 4 11620.0 5 8728.0 6 8117.0 7 8242.0 8 8701.0 9 9161.0 10 10019.0 11 10821.0 12 10767.0 13 11014.0 14 11916.0 15 12856.0 16 12567.0 17 13295.0 18 12626.0 19 11766.0 20 11481.0 21 12341.0 22 13593.0 23 15570.0 24 18596.0 25 21889.0 26 25643.0 27 30808.0 28 36575.0 29 43326.0 30 51563.0 31 62360.0 32 79073.0 33 102670.0 34 145957.0 35 211314.0 36 354556.0 37 647182.0 38 704406.0 39 130433.0 40 8.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.47897462809922 18.417421279310684 13.702204998458253 24.401399094131836 2 16.166137781452797 19.822355843118736 38.97258510811537 25.038921267313096 3 18.972992196147224 23.959120012040763 29.56060539463467 27.507282397177345 4 13.766949690152721 16.2926154480406 36.386816746705136 33.55361811510155 5 14.658449993706633 37.05021573927747 34.02939967940458 14.261934587611325 6 33.212320778031064 34.85943857985897 17.488588913270416 14.439651728839559 7 28.751239520043192 31.8611990531881 21.10920525253588 18.27835617423283 8 26.80282580024061 33.92278516155277 20.310489162239843 18.96389987596678 9 27.044476542035323 15.535315357720773 19.708937951081097 37.71127014916281 10-11 25.57516094985841 25.186224799335942 27.906281151551944 21.332333099253702 12-13 26.145442457761508 22.84186747714941 27.529353172383107 23.48333689270597 14-15 23.636429624558648 24.47880525769722 24.88973766120644 26.99502745653769 16-17 23.626273202285812 27.28979989979176 25.861299810736266 23.22262708718616 18-19 23.61548271806445 26.777237853109792 27.03300390789759 22.574275520928175 20-21 24.25282161782465 25.904852741553043 26.91436813321715 22.92795750740516 22-23 24.196793550673885 25.656955506382552 26.521225407923506 23.625025535020065 24-25 24.000244392010778 25.880747686391775 26.43307696034273 23.68593096125471 26-27 23.6930076006512 26.15479626725794 26.47551844564519 23.67667768644567 28-29 23.747206012791963 26.392632745288736 26.37041233916629 23.489748902753014 30-31 24.282092015181913 25.966781865251775 26.1795816402359 23.571544479330413 32-33 23.94349859177526 26.025321250488254 26.067061221453347 23.964118936283135 34-35 24.26151587874834 26.24120852236605 26.052131423645204 23.445144175240404 36-37 24.262876815641157 26.052707427911866 26.181926561596175 23.502489194850803 38-39 24.093482795124324 26.117464426215403 26.133623926978363 23.65542885168191 40-41 24.251918028754705 25.926296972192205 26.18938418388047 23.632400815172623 42-43 24.14004544222792 25.907489629583306 25.91239238738457 24.040072540804204 44-45 23.992122841525536 25.933186864778225 26.13333351116737 23.94135678252887 46-47 24.119357226186803 25.890504899133717 25.946893247120183 24.043244627559297 48-49 23.910432745780675 26.02695280632937 26.017199257663247 24.04541519022671 50-51 24.017347993731835 26.021890563189583 26.14860100831504 23.812160434763545 52-53 24.227306210061467 25.81279280198558 26.135002119161925 23.82489886879103 54-55 23.711113660221123 25.70563292549055 26.403262831174963 24.179990583113362 56-57 23.82983917401452 25.851598680229436 26.162181973529552 24.15638017222649 58-59 23.95710900643835 25.789620503613016 26.267948990077773 23.98532149987086 60-61 23.9849579175867 25.811091534793317 26.4452708518633 23.758679695756673 62-63 23.966220044601066 25.725234218962754 26.452411022139454 23.85613471429672 64-65 23.741636631491538 25.58168191978336 26.372075999623153 24.304605449101945 66-67 23.76533298653315 25.702612172353025 26.266279184152562 24.265775656961264 68-69 23.782121543254604 25.712340228011566 26.34796022385668 24.157578004877152 70-71 23.72505798278745 25.572255480004795 26.314558518147823 24.38812801905993 72-73 23.64359572523197 25.855001119490012 26.188997588803563 24.31240556647445 74-75 23.72415802857227 25.85713397372237 26.229887537087386 24.188820460617976 76-77 23.674913781476825 25.558459467916638 26.29642034128648 24.470206409320053 78-79 23.636386678790824 25.62406586265473 26.379413301298698 24.360134157255743 80-81 23.790050035496634 25.821805056848817 26.111331523230074 24.27681338442447 82-83 23.783928733129958 25.776289947657826 26.292424101180305 24.14735721803191 84-85 23.78055826951159 25.832892680256293 26.200706679133358 24.18584237109876 86-87 23.592741326187006 25.997405519791666 26.164522334445113 24.245330819576218 88-89 23.503691196366578 25.723245664361976 26.318803820218122 24.454259319053325 90-91 23.6328958248623 25.628685629999858 26.38913581597626 24.349282729161587 92-93 23.751402471151252 25.47526405319041 26.4448642661442 24.328469209514136 94-95 23.696111612452313 25.47486834928265 26.444621628248733 24.3843984100163 96-97 23.570714411770492 25.365876360161987 26.51692444009716 24.546484787970357 98-99 23.379733215825585 25.37516889375984 26.465545839780386 24.779552050634187 100-101 23.586741290291695 25.395346137313318 26.527711218380855 24.490201354014125 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 98.0 1 74.0 2 72.0 3 101.5 4 98.5 5 120.0 6 198.5 7 355.0 8 530.5 9 631.5 10 599.5 11 512.5 12 544.0 13 631.0 14 703.5 15 794.5 16 848.5 17 943.0 18 1077.5 19 1166.5 20 1283.0 21 1399.5 22 1553.0 23 1718.0 24 1911.0 25 2285.5 26 2846.0 27 3723.5 28 5269.5 29 7947.5 30 12148.5 31 18219.5 32 26249.0 33 33472.0 34 39790.0 35 47024.0 36 56152.5 37 65478.5 38 73097.5 39 79558.5 40 84981.5 41 90370.0 42 96271.5 43 102943.5 44 108937.0 45 115543.5 46 120794.0 47 124680.5 48 129332.0 49 131663.0 50 131713.0 51 130087.5 52 127939.0 53 126477.5 54 123334.5 55 116999.0 56 108015.0 57 96662.0 58 86183.0 59 74839.5 60 61732.0 61 51529.0 62 43078.0 63 33250.5 64 23944.5 65 17600.5 66 13383.0 67 10281.5 68 7867.5 69 6081.0 70 4548.0 71 3296.0 72 2358.5 73 1743.5 74 1354.0 75 1004.5 76 740.0 77 500.0 78 297.0 79 205.0 80 156.5 81 106.5 82 81.5 83 85.5 84 72.0 85 58.5 86 49.0 87 37.0 88 33.5 89 39.0 90 35.0 91 19.0 92 17.0 93 18.0 94 17.5 95 18.5 96 14.5 97 7.0 98 5.0 99 8.0 100 6.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.05118776925166011 2 0.05880935518054838 3 0.04965679565895766 4 0.05634648461837488 5 0.04865833462023867 6 0.017572914281454185 7 0.014544249130673257 8 0.01963640042814009 9 0.019669682462764057 10-11 0.021982783869129715 12-13 0.027208063305092418 14-15 0.04433167011912306 16-17 0.029254908434466344 18-19 0.023530398479144145 20-21 0.02684196092422879 22-23 0.046445079317744914 24-25 0.04168574836651774 26-27 0.031085420338784486 28-29 0.020917758761162794 30-31 0.013029916555282791 32-33 0.010300789716117557 34-35 0.009784918179446081 36-37 0.0012647173157107178 38-39 0.0066397659074812695 40-41 0.0035611777047643896 42-43 0.21005956152916305 44-45 0.18548077895936396 46-47 0.19228695503996507 48-49 0.19022346889327915 50-51 0.18839295698896102 52-53 0.19293595471513242 54-55 0.1915713912955498 56-57 0.2021051552540351 58-59 0.1981113110991592 60-61 0.20312025731006608 62-63 0.20105677116338017 64-65 0.20157264270005162 66-67 0.19233687809190103 68-69 0.1910721607761903 70-71 0.17448106651614312 72-73 0.18273501110288676 74-75 0.18163670396029585 76-77 0.18017229443684135 78-79 0.2064318197551507 80-81 0.21475232841114228 82-83 0.21208976564122498 84-85 0.20746356282849368 86-87 0.22368855470767723 88-89 0.22232399128809463 90-91 0.22175819669948718 92-93 0.22600165611404288 94-95 0.23660198414177613 96-97 0.23613603565704064 98-99 0.22656745070265033 100-101 0.2360528305704807 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 3004624.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 60.33833322690867 #Duplication Level Percentage of deduplicated Percentage of total 1 78.16196199777747 47.161625086908685 2 12.218473893882173 14.744846986666937 3 4.011983656800497 7.262292203548201 4 1.7797375683011123 4.295455938104026 5 0.9993290567130062 3.014892481364084 6 0.6060079000142254 2.193930396551849 7 0.4251992950150268 1.7959071725324336 8 0.31741216652075943 1.5321696859043685 9 0.22392687743872677 1.2160237094423132 >10 1.1909374640968309 12.513605705821465 >50 0.04982929629277588 2.026478927711612 >100 0.013596823032203519 1.4280262621521216 >500 0.0012168307086909567 0.5030376469331043 >1k 3.87173406434528E-4 0.3117077963588143 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 9.984610387189879E-5 2 0.0 0.0 0.0 0.0 1.664101731198313E-4 3 0.0 3.328203462396626E-5 0.0 0.0 1.664101731198313E-4 4 0.0 3.328203462396626E-5 0.0 0.0 1.9969220774379757E-4 5 0.0 3.328203462396626E-5 0.0 0.0 1.9969220774379757E-4 6 0.0 3.328203462396626E-5 0.0 0.0 2.3297424236776382E-4 7 0.0 3.328203462396626E-5 0.0 0.0 2.3297424236776382E-4 8 0.0 3.328203462396626E-5 0.0 0.0 2.3297424236776382E-4 9 0.0 3.328203462396626E-5 0.0 0.0 2.3297424236776382E-4 10-11 0.0 3.328203462396626E-5 0.0 3.328203462396626E-5 2.3297424236776382E-4 12-13 0.0 3.328203462396626E-5 0.0 9.984610387189879E-5 5.491535712954434E-4 14-15 0.0 3.328203462396626E-5 0.0 9.984610387189879E-5 5.990766232313927E-4 16-17 0.0 3.328203462396626E-5 0.0 1.3312813849586505E-4 6.323586578553589E-4 18-19 0.0 3.328203462396626E-5 0.0 1.4976915580784819E-4 6.656406924793252E-4 20-21 0.0 3.328203462396626E-5 0.0 2.1633322505578068E-4 6.656406924793252E-4 22-23 0.0 3.328203462396626E-5 0.0 2.828972943037132E-4 6.656406924793252E-4 24-25 0.0 3.328203462396626E-5 0.0 5.15871536671477E-4 6.656406924793252E-4 26-27 0.0 3.328203462396626E-5 0.0 8.320508655991565E-4 7.488457790392408E-4 28-29 0.0 3.328203462396626E-5 0.0 0.0024795115794854863 7.65486796351224E-4 30-31 0.0 3.328203462396626E-5 0.0 0.007987688309751903 7.65486796351224E-4 32-33 0.0 3.328203462396626E-5 0.0 0.022781552700104905 7.65486796351224E-4 34-35 0.0 3.328203462396626E-5 0.0 0.04546325929633791 7.65486796351224E-4 36-37 0.0 3.328203462396626E-5 0.0 0.08152434381140536 7.65486796351224E-4 38-39 0.0 3.328203462396626E-5 0.0 0.13905234065893102 7.65486796351224E-4 40-41 0.0 3.328203462396626E-5 0.0 0.20275415492920246 7.987688309751903E-4 42-43 0.0 3.328203462396626E-5 0.0 0.27346183748781877 7.987688309751903E-4 44-45 0.0 3.328203462396626E-5 0.0 0.3706786606244242 8.154098482871734E-4 46-47 0.0 3.328203462396626E-5 0.0 0.48270598916869467 8.486918829111395E-4 48-49 0.0 3.328203462396626E-5 0.0 0.5963474963922275 8.98614934847089E-4 50-51 3.328203462396626E-5 3.328203462396626E-5 0.0 0.7155471033979626 8.98614934847089E-4 52-53 6.656406924793252E-5 3.328203462396626E-5 0.0 0.8422684502287141 9.485379867830385E-4 54-55 6.656406924793252E-5 3.328203462396626E-5 0.0 0.9990268333075952 9.984610387189878E-4 56-57 6.656406924793252E-5 3.328203462396626E-5 0.0 1.1830099207088807 9.984610387189878E-4 58-59 6.656406924793252E-5 3.328203462396626E-5 0.0 1.3741320045370071 9.984610387189878E-4 60-61 6.656406924793252E-5 3.328203462396626E-5 0.0 1.5730088024325175 9.984610387189878E-4 62-63 6.656406924793252E-5 3.328203462396626E-5 0.0 1.7839004148272797 0.0010983071425908866 64-65 6.656406924793252E-5 4.992305193594939E-5 0.0 2.0231483207216607 0.0011482301945268361 66-67 6.656406924793252E-5 6.656406924793252E-5 0.0 2.3167957122089153 0.001164871211838819 68-69 6.656406924793252E-5 6.656406924793252E-5 0.0 2.6287482227393513 0.001164871211838819 70-71 6.656406924793252E-5 6.656406924793252E-5 0.0 2.9524160094574228 0.0011981532464627855 72-73 9.984610387189879E-5 6.656406924793252E-5 0.0 3.292342070089302 0.0013812044368946 74-75 9.984610387189879E-5 6.656406924793252E-5 0.0 3.6632869869907183 0.001397845454206583 76-77 9.984610387189879E-5 6.656406924793252E-5 0.0 4.0953710014963605 0.001414486471518566 78-79 9.984610387189879E-5 6.656406924793252E-5 0.0 4.570122584389927 0.001431127488830549 80-81 9.984610387189879E-5 6.656406924793252E-5 0.0 5.055724110570907 0.0014477685061425323 82-83 9.984610387189879E-5 6.656406924793252E-5 0.0 5.567069290533524 0.0014976915580784816 84-85 9.984610387189879E-5 6.656406924793252E-5 0.0 6.11271160717614 0.0014976915580784816 86-87 9.984610387189879E-5 6.656406924793252E-5 0.0 6.712786691446251 0.0016141786792623638 88-89 9.984610387189879E-5 6.656406924793252E-5 0.0 7.3683762094691385 0.0016973837658222793 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 2885 0.0 54.77179 1 GTATCAA 5325 0.0 41.79379 1 TCAACGC 6290 0.0 35.008156 4 CAACGCA 6490 0.0 33.928196 5 ATCAACG 6585 0.0 33.22197 3 TATCAAC 6665 0.0 32.681892 2 AACGCAG 6825 0.0 32.598568 6 ACGCAGA 8055 0.0 26.799831 7 GTACATG 9270 0.0 26.720789 1 CGCAGAG 8385 0.0 25.523867 8 TACATGG 9560 0.0 24.969208 2 ACATGGG 10085 0.0 23.198036 3 CATGGGG 8520 0.0 21.890461 4 GCAGAGT 9255 0.0 21.176481 9 TATACCG 135 3.8219718E-4 21.091375 5 TAAGGCG 870 0.0 18.545866 5 ATGGGGG 5475 0.0 18.3755 5 CAGAGTA 8475 0.0 18.282305 10-11 GTATTAA 2000 0.0 18.26919 1 AGAGTAC 7825 0.0 17.799639 10-11 >>END_MODULE