##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921353_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2512223 Sequences flagged as poor quality 0 Sequence length 101 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.51579059661503 31.0 31.0 34.0 27.0 34.0 2 30.582554972229776 33.0 31.0 34.0 27.0 34.0 3 30.624025812995104 33.0 31.0 34.0 26.0 34.0 4 34.08918197150492 37.0 35.0 37.0 30.0 37.0 5 34.090826331898086 37.0 35.0 37.0 30.0 37.0 6 34.12858213621959 37.0 35.0 37.0 30.0 37.0 7 34.05128286780274 37.0 35.0 37.0 30.0 37.0 8 34.021522372814836 37.0 35.0 37.0 30.0 37.0 9 35.59241436767357 39.0 37.0 39.0 30.0 39.0 10-11 35.48649343629128 39.0 37.0 39.0 30.0 39.0 12-13 35.37262277273952 39.0 37.0 39.0 30.0 39.0 14-15 36.51325539173871 40.0 37.0 41.0 29.5 41.0 16-17 36.45727130911547 40.0 37.0 41.0 29.0 41.0 18-19 36.41817426239629 40.0 37.0 41.0 29.0 41.0 20-21 36.36222660169897 40.0 37.0 41.0 28.0 41.0 22-23 36.251088975779616 40.0 37.0 41.0 27.5 41.0 24-25 36.14684564228574 40.0 36.5 41.0 27.0 41.0 26-27 35.99765267653389 40.0 36.0 41.0 27.0 41.0 28-29 35.8598366864725 40.0 36.0 41.0 27.0 41.0 30-31 35.71156422021453 40.0 36.0 41.0 26.5 41.0 32-33 35.53522676927964 40.0 35.5 41.0 25.5 41.0 34-35 35.37403188331609 39.0 35.0 41.0 25.0 41.0 36-37 35.20701446487831 39.0 35.0 41.0 25.0 41.0 38-39 35.43504418198543 39.5 35.0 41.0 25.5 41.0 40-41 35.554379925667426 40.0 35.0 41.0 25.5 41.0 42-43 35.39376301387257 40.0 35.0 41.0 24.5 41.0 44-45 35.27050305645638 40.0 35.0 41.0 24.0 41.0 46-47 35.1127320305562 40.0 35.0 41.0 23.5 41.0 48-49 34.96409096644685 40.0 35.0 41.0 23.0 41.0 50-51 33.25799958841233 37.0 32.5 39.5 19.0 40.0 52-53 33.42046904275615 37.5 33.5 39.5 20.0 40.0 54-55 34.27818967504079 39.0 34.0 40.5 20.5 41.0 56-57 34.28925875608972 39.0 34.0 41.0 20.0 41.0 58-59 34.10922278794518 38.5 34.0 41.0 20.0 41.0 60-61 33.863606654345574 38.0 34.0 40.5 18.5 41.0 62-63 33.57196892950984 37.0 34.0 40.0 17.5 41.0 64-65 33.28110900186807 37.0 34.0 40.0 15.5 41.0 66-67 32.943970141185716 36.0 33.0 39.5 13.0 41.0 68-69 32.580082659859414 36.0 33.0 39.0 9.5 41.0 70-71 32.19949502890468 35.0 33.0 39.0 7.5 40.5 72-73 31.842822671395012 35.0 32.5 37.5 4.5 40.0 74-75 31.447450723920607 35.0 32.0 37.0 2.0 39.0 76-77 31.07917310684601 35.0 32.0 36.5 2.0 39.0 78-79 30.742055343016922 35.0 32.0 36.0 2.0 38.5 80-81 30.400228005236798 35.0 31.5 36.0 2.0 37.0 82-83 30.105096959943445 35.0 31.0 35.0 2.0 37.0 84-85 29.87756739748024 35.0 31.0 35.0 2.0 36.5 86-87 29.662614743993664 35.0 31.0 35.0 2.0 36.0 88-89 29.472083887457444 35.0 31.0 35.0 2.0 36.0 90-91 29.226314304104374 35.0 31.0 35.0 2.0 35.5 92-93 29.0435518662157 35.0 31.0 35.0 2.0 35.0 94-95 28.842794807626554 34.0 30.0 35.0 2.0 35.0 96-97 28.6030999238523 34.0 30.0 35.0 2.0 35.0 98-99 28.39086677416774 34.0 30.0 35.0 2.0 35.0 100-101 27.364692147154134 33.5 27.5 35.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 83796.0 3 14485.0 4 9861.0 5 7362.0 6 6840.0 7 6803.0 8 7184.0 9 7581.0 10 8264.0 11 9133.0 12 9115.0 13 9317.0 14 9976.0 15 10746.0 16 11092.0 17 11859.0 18 11077.0 19 9842.0 20 9956.0 21 10216.0 22 11316.0 23 13127.0 24 15447.0 25 18218.0 26 21439.0 27 25363.0 28 29970.0 29 35482.0 30 42571.0 31 52077.0 32 65356.0 33 85217.0 34 123586.0 35 180343.0 36 297018.0 37 546749.0 38 579299.0 39 105131.0 40 9.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.60295701825895 18.50804625806886 13.6906058558137 24.198390867858496 2 16.183966220527196 19.631769654709874 39.45387144078118 24.73039268398175 3 19.015009145507353 24.35436859759728 29.263592517768327 27.36702973912704 4 13.465542510314945 16.073670208529144 36.472647475825596 33.98813980533032 5 14.485608572772312 37.55721068705391 33.755151600107205 14.202029140066577 6 33.19887619738446 34.816342991501415 17.601835156772218 14.382945654341917 7 29.001957087395336 32.008689850216726 20.895650138381523 18.093702924006408 8 27.236096037608597 34.03597309621995 19.98550024166264 18.742430624508813 9 27.55575692017242 15.448943784634702 19.314454338825783 37.680844956367096 10-11 25.97815207550505 25.293005686129778 27.404322764505363 21.32451947385981 12-13 26.47257548266983 22.779217097606587 27.335530336601764 23.412677083121817 14-15 23.889286774539805 24.169791180716878 24.821434295805116 27.119487748938205 16-17 23.90352571121419 27.093169556648284 25.60345205152197 23.399852680615556 18-19 23.86084529584957 26.618936044416753 26.897416653892936 22.622802005840747 20-21 24.517516521743286 25.590352341093748 26.874605955651237 23.017525181511733 22-23 24.40039137634013 25.40973455063003 26.4460973470992 23.743776725930633 24-25 24.162373340575378 25.679698096017063 26.340541130316154 23.81738743309141 26-27 23.77073445857528 25.93156371945811 26.449722365950564 23.84797945601604 28-29 23.788106205682936 26.326993745346833 26.245735011326854 23.639165037643377 30-31 24.439989235308822 25.77207995808777 26.13958826648662 23.648342540116786 32-33 24.115317980745036 25.836552578527822 26.025786074389245 24.022343366337896 34-35 24.426499818669445 26.063729629174038 26.075911220878133 23.433859331278388 36-37 24.390421087618947 25.885613519704957 26.140531051654236 23.583434341021857 38-39 24.224668030491394 26.054466207520306 26.031118770185184 23.68974699180312 40-41 24.428711889910158 25.75238940659918 26.098649353337606 23.720249350153058 42-43 24.12419243705272 25.824205300225454 25.91707940167301 24.13452286104882 44-45 24.04431561888903 25.8245127969554 26.17446319140723 23.95670839274834 46-47 24.274755400490385 25.779130366469076 25.825209925190006 24.120904307850534 48-49 23.94248277083152 25.98984474008899 25.93479354906116 24.13287894001833 50-51 24.151842583419054 25.87043865223148 26.100628241122248 23.877090523227213 52-53 24.3477289902436 25.71942725770014 26.028968110751975 23.903875641304285 54-55 23.706468891767212 25.604195511941146 26.44795966872332 24.24137592756832 56-57 23.828230626451226 25.743610216634057 26.113780140243016 24.314379016671705 58-59 24.079248994202906 25.71787670730268 26.236986852054507 23.96588744643991 60-61 24.233513470397032 25.773027299738764 26.31902207509921 23.67443715476499 62-63 24.154667690834515 25.61847394603537 26.40396841112203 23.822889952008087 64-65 23.807703474691593 25.48215513514462 26.380958989992777 24.329182400171014 66-67 23.867588871333467 25.67135532023669 26.19990556760331 24.26115024082654 68-69 23.93996455648551 25.592546334180337 26.304985699770146 24.162503409564007 70-71 23.90776307085889 25.477414444181733 26.244606846538794 24.370215638420582 72-73 23.804461641889958 25.879751948469337 26.033089487237355 24.28269692240335 74-75 23.80617626107187 25.88319241398051 26.144489172413394 24.166142152534224 76-77 23.762608571176795 25.400581438699927 26.19771706958404 24.639092920539234 78-79 23.751992474613086 25.463511465665622 26.319091481431922 24.46540457828937 80-81 24.011848957502345 25.746493097880542 25.953448985583087 24.288208959034023 82-83 23.955359092663187 25.699932292762504 26.182219221875318 24.162489392698987 84-85 23.934670832466676 25.7778319320257 26.060812251233077 24.22668498427455 86-87 23.67788255371024 25.99842191196774 26.015355642243136 24.308339892078884 88-89 23.587398438846304 25.654223763235663 26.166656827015743 24.59172097090229 90-91 23.8424931438544 25.459845425081028 26.275103465469957 24.422557965594617 92-93 24.01426614160947 25.33197541302578 26.316008879139307 24.33774956622544 94-95 23.872532053999333 25.33779504391061 26.30162426877983 24.48804863331023 96-97 23.626931408359926 25.18005731911932 26.444592814623295 24.748418457897454 98-99 23.365953233506946 25.192500095741423 26.380012861264294 25.061533809487337 100-101 23.64627819636614 25.178949266638647 26.458020356220903 24.716752180774318 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 49.0 1 47.5 2 59.5 3 81.0 4 76.5 5 88.0 6 161.0 7 341.0 8 517.5 9 591.0 10 562.0 11 478.0 12 467.5 13 536.5 14 631.5 15 697.5 16 775.0 17 896.5 18 995.5 19 1087.5 20 1159.0 21 1268.0 22 1448.0 23 1625.0 24 1880.5 25 2315.5 26 3044.5 27 4132.5 28 5756.0 29 8027.5 30 11272.5 31 15709.5 32 21849.0 33 27124.0 34 31644.5 35 37444.0 36 44741.5 37 52312.5 38 58338.0 39 64583.5 40 69873.5 41 74069.5 42 78010.0 43 82472.5 44 87368.0 45 92958.0 46 97267.5 47 100859.0 48 105512.5 49 108008.5 50 108305.5 51 107591.5 52 106592.0 53 106344.5 54 105465.5 55 101161.5 56 94302.5 57 85374.5 58 75996.5 59 66211.0 60 55186.5 61 45703.0 62 37766.5 63 29099.0 64 21107.5 65 15583.5 66 11755.5 67 9046.0 68 6996.5 69 5406.5 70 4191.5 71 3094.5 72 2145.5 73 1573.5 74 1245.5 75 975.5 76 738.5 77 517.5 78 339.5 79 233.0 80 169.5 81 127.5 82 111.5 83 92.5 84 72.5 85 63.0 86 51.5 87 37.0 88 35.0 89 36.5 90 27.5 91 30.0 92 27.0 93 23.0 94 21.0 95 15.0 96 13.0 97 11.5 98 9.5 99 5.0 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.04697035255230129 2 0.05369746236699529 3 0.0459354125808099 4 0.05186641472512591 5 0.04418397570597833 6 0.015683321106446362 7 0.013016360410680102 8 0.018191060268137025 9 0.018788141020920517 10-11 0.019783275608893 12-13 0.024679337781717627 14-15 0.04109905848326363 16-17 0.026789023108219293 18-19 0.022211404003545862 20-21 0.024221575871250286 22-23 0.04318884111800585 24-25 0.03825297356166232 26-27 0.029197248811112707 28-29 0.019624054074817404 30-31 0.012220252740302116 32-33 0.009831929729168151 34-35 0.009394070510460258 36-37 0.0015126045737181772 38-39 0.0067669151982128984 40-41 0.003701900667257644 42-43 0.20163417021498492 44-45 0.1766960974403944 46-47 0.18324408302925338 48-49 0.18139313269562454 50-51 0.17942276621143902 52-53 0.1846173687606554 54-55 0.18274651573526715 56-57 0.19349396928536997 58-59 0.18943382016644222 60-61 0.19397163388759675 62-63 0.19192165663637345 64-65 0.1924590293138786 66-67 0.18346301263860731 68-69 0.18195040806488913 70-71 0.16646611387603727 72-73 0.1734320559918447 74-75 0.17301409946489624 76-77 0.1714019814323808 78-79 0.19809149108180285 80-81 0.2056744166421532 82-83 0.20322638555574085 84-85 0.19829051799939734 86-87 0.21463062793390555 88-89 0.21331705027778186 90-91 0.21287919105907396 92-93 0.21687963210272337 94-95 0.22730864258467498 96-97 0.2280649448715341 98-99 0.2177752532318986 100-101 0.22754747488578841 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 2512223.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 59.81568214541334 #Duplication Level Percentage of deduplicated Percentage of total 1 78.87410063377558 47.179081330152655 2 11.756452324431647 14.064404307918185 3 3.844231287591402 6.898359503760612 4 1.708628486171776 4.088111137337989 5 0.9660183528051826 2.889152336901528 6 0.5994729403237232 2.15147297119081 7 0.42205040932620536 1.7671663193518525 8 0.29760538187952995 1.4241175141816256 9 0.22890817232669017 1.2323068628742722 >10 1.2223634759690551 12.893793724177108 >50 0.05807614472439764 2.3563336497910137 >100 0.020089469220193737 2.0466133871833847 >500 0.0014020450182107584 0.589406141029397 >1k 6.008764363704702E-4 0.4196808141496546 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 3.9805383518899394E-5 2 0.0 0.0 0.0 0.0 3.9805383518899394E-5 3 0.0 0.0 0.0 0.0 3.9805383518899394E-5 4 0.0 0.0 0.0 0.0 7.961076703779879E-5 5 0.0 7.961076703779879E-5 0.0 0.0 7.961076703779879E-5 6 0.0 7.961076703779879E-5 0.0 0.0 1.194161505566982E-4 7 0.0 7.961076703779879E-5 0.0 0.0 1.194161505566982E-4 8 0.0 7.961076703779879E-5 0.0 0.0 1.194161505566982E-4 9 0.0 7.961076703779879E-5 0.0 0.0 1.194161505566982E-4 10-11 0.0 7.961076703779879E-5 0.0 0.0 1.194161505566982E-4 12-13 0.0 7.961076703779879E-5 0.0 0.0 1.3931884231614789E-4 14-15 0.0 7.961076703779879E-5 0.0 0.0 1.791242258350473E-4 16-17 0.0 7.961076703779879E-5 0.0 0.0 1.9902691759449698E-4 18-19 0.0 1.194161505566982E-4 0.0 0.0 2.7863768463229577E-4 20-21 0.0 1.194161505566982E-4 0.0 1.9902691759449697E-5 3.582484516700946E-4 22-23 0.0 1.194161505566982E-4 0.0 1.194161505566982E-4 4.577619104673431E-4 24-25 0.0 1.194161505566982E-4 0.0 2.5873499287284605E-4 5.174699857456922E-4 26-27 0.0 1.194161505566982E-4 0.0 7.164969033401892E-4 5.174699857456922E-4 28-29 1.9902691759449697E-5 1.194161505566982E-4 0.0 0.0018708530253882718 5.174699857456922E-4 30-31 3.9805383518899394E-5 1.194161505566982E-4 0.0 0.006448472130061702 5.174699857456922E-4 32-33 3.9805383518899394E-5 1.194161505566982E-4 0.0 0.018111449501099226 5.572753692645915E-4 34-35 3.9805383518899394E-5 1.194161505566982E-4 0.0 0.03441175405208853 5.572753692645915E-4 36-37 3.9805383518899394E-5 1.194161505566982E-4 0.0 0.06030515603113259 5.572753692645915E-4 38-39 3.9805383518899394E-5 1.194161505566982E-4 0.0 0.10504640710637551 5.572753692645915E-4 40-41 3.9805383518899394E-5 1.194161505566982E-4 0.0 0.1553803145660238 5.572753692645915E-4 42-43 3.9805383518899394E-5 1.194161505566982E-4 0.0 0.20949573345996753 5.572753692645915E-4 44-45 3.9805383518899394E-5 1.194161505566982E-4 0.0 0.2804488295824057 5.572753692645915E-4 46-47 3.9805383518899394E-5 1.194161505566982E-4 0.0 0.3633435407605137 5.771780610240413E-4 48-49 3.9805383518899394E-5 1.194161505566982E-4 0.0 0.4541794259506421 6.766915198212897E-4 50-51 3.9805383518899394E-5 1.194161505566982E-4 0.0 0.5468264560908804 7.563022868590885E-4 52-53 3.9805383518899394E-5 1.3931884231614789E-4 0.0 0.6445486726297784 8.359130538968874E-4 54-55 3.9805383518899394E-5 1.9902691759449698E-4 0.0 0.7642434608711091 9.553292044535856E-4 56-57 3.9805383518899394E-5 1.9902691759449698E-4 0.0 0.9000395267458343 9.553292044535856E-4 58-59 3.9805383518899394E-5 2.388323011133964E-4 0.0 1.0465034354036247 9.553292044535856E-4 60-61 3.9805383518899394E-5 2.388323011133964E-4 0.0 1.2039138245291123 9.553292044535856E-4 62-63 3.9805383518899394E-5 2.388323011133964E-4 0.0 1.3688275284479126 9.951345879724849E-4 64-65 3.9805383518899394E-5 3.1844306815119515E-4 0.0 1.5499022180753859 9.951345879724849E-4 66-67 3.9805383518899394E-5 3.582484516700946E-4 0.0 1.7595372703776695 9.951345879724849E-4 68-69 3.9805383518899394E-5 3.582484516700946E-4 0.0 1.9929162339489768 9.951345879724849E-4 70-71 3.9805383518899394E-5 3.582484516700946E-4 0.0 2.243471220508689 0.0010349399714913844 72-73 3.9805383518899394E-5 3.582484516700946E-4 0.0 2.501191176101803 0.0010747453550102838 74-75 3.9805383518899394E-5 3.582484516700946E-4 0.0 2.7825953348886623 0.0010946480467697334 76-77 3.9805383518899394E-5 3.582484516700946E-4 0.0 3.1072878482523247 0.0011543561220480826 78-79 3.9805383518899394E-5 3.582484516700946E-4 0.0 3.4639838899651823 0.001194161505566982 80-81 3.9805383518899394E-5 3.9805383518899396E-4 0.0 3.8344724970673383 0.0012140641973264316 82-83 3.9805383518899394E-5 3.9805383518899396E-4 0.0 4.2202861768242705 0.0012936749643642303 84-85 3.9805383518899394E-5 3.9805383518899396E-4 0.0 4.636152921137972 0.0013135776561236801 86-87 5.970807527834909E-5 3.9805383518899396E-4 0.0 5.0831673780552125 0.0013135776561236801 88-89 7.961076703779879E-5 3.9805383518899396E-4 0.0 5.577609949435221 0.0013135776561236801 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 2450 0.0 57.14793 1 GTATCAA 4775 0.0 47.41214 1 TCAACGC 6230 0.0 35.957527 4 CAACGCA 6410 0.0 34.798332 5 TATCAAC 6470 0.0 34.698452 2 ATCAACG 6570 0.0 34.023796 3 AACGCAG 6735 0.0 33.177696 6 ACGCAGA 7945 0.0 27.35292 7 GTACATG 10085 0.0 26.919357 1 CGCAGAG 8375 0.0 25.667295 8 TACATGG 10430 0.0 25.528881 2 ACATGGG 10660 0.0 24.97658 3 CATGGGG 8560 0.0 22.399769 4 GCAGAGT 9330 0.0 21.819378 9 ATGGGGG 5725 0.0 20.309967 5 AGAGTAC 8165 0.0 19.934467 10-11 GAGTACA 8010 0.0 18.842527 1 CAGAGTA 8835 0.0 18.369032 10-11 GTGTAAG 1160 0.0 18.002766 1 AGTACAT 8050 0.0 17.923836 2 >>END_MODULE