##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921178_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2073858 Sequences flagged as poor quality 0 Sequence length 25 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.821841225387658 31.0 27.0 31.0 10.0 34.0 2 26.56543167372115 31.0 26.0 31.0 10.0 34.0 3 26.321461739424784 31.0 26.0 31.0 10.0 34.0 4 30.143194953559984 35.0 30.0 37.0 10.0 37.0 5 29.916629296702087 35.0 30.0 37.0 10.0 37.0 6 30.48120893523086 35.0 31.0 37.0 10.0 37.0 7 30.47619171611557 35.0 31.0 37.0 8.0 37.0 8 30.108635692511253 35.0 30.0 37.0 8.0 37.0 9 31.73023659286219 37.0 31.0 39.0 2.0 39.0 10 31.07974557563729 37.0 30.0 39.0 2.0 39.0 11 31.53758164734519 37.0 31.0 39.0 2.0 39.0 12 31.22510943372208 37.0 30.0 39.0 2.0 39.0 13 31.22922736272204 37.0 30.0 39.0 2.0 39.0 14 32.31196398210485 38.0 31.0 40.0 2.0 41.0 15 31.95837998551492 38.0 31.0 40.0 2.0 41.0 16 31.8841198384846 38.0 31.0 40.0 2.0 41.0 17 32.213631309376055 38.0 31.0 40.0 2.0 41.0 18 32.264506538056125 38.0 32.0 40.0 2.0 41.0 19 31.959579199733056 38.0 31.0 40.0 2.0 41.0 20 31.831054970976798 38.0 31.0 40.0 2.0 41.0 21 31.77320867677536 38.0 31.0 40.0 2.0 41.0 22 31.004355650193986 38.0 29.0 40.0 2.0 41.0 23 31.102591402111425 38.0 30.0 40.0 2.0 41.0 24 30.72162703521649 38.0 30.0 40.0 2.0 41.0 25 30.224263184846794 37.0 28.0 40.0 2.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 175340.0 3 7.0 4 1198.0 5 6974.0 6 8888.0 7 8054.0 8 6965.0 9 6441.0 10 6218.0 11 5893.0 12 5761.0 13 5672.0 14 5639.0 15 5873.0 16 6148.0 17 6872.0 18 7808.0 19 9700.0 20 12364.0 21 15220.0 22 18680.0 23 21727.0 24 24956.0 25 28031.0 26 31795.0 27 35342.0 28 39544.0 29 45999.0 30 54246.0 31 65359.0 32 81718.0 33 103238.0 34 132302.0 35 171047.0 36 225409.0 37 300104.0 38 387326.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.49653354762809 18.068578501290546 12.358928918552719 25.07595903252865 2 16.482248316594564 20.014589433371302 38.31781517445807 25.185347075576065 3 19.221422574125256 23.74622085494883 29.690227054941015 27.342129515984897 4 13.827339579703429 16.42109902870858 34.324863006002516 35.426698385585475 5 14.296943568376685 36.81567855868368 33.747624972271254 15.139752900668382 6 33.834930529905364 34.006013958633304 17.14600244377344 15.013053067687895 7 29.312188039323377 31.823207776720665 20.319908727014788 18.544695456941167 8 26.563565365909643 33.71404819516467 20.40039193410415 19.32199450482154 9 26.98050800420307 15.866728584290188 19.210569589091698 37.94219382241505 10 16.29513863103958 28.142308385950663 32.408242348023755 23.154310634986 11 35.10194121851078 22.860411082701678 21.914733758799716 20.12291393998783 12 23.322113344392577 25.321457505497474 28.7929188688708 22.56351028123915 13 28.77437716791089 21.64600405166964 24.928329040711034 24.65128973970844 14 22.800531459560606 21.43744860829453 25.67282442784906 30.0891955042958 15 24.819490798406918 28.231383549442864 22.968225654706018 23.9808999974442 16 24.038270459241655 27.292108405957038 24.845748980824254 23.823872153977053 17 23.088937930369138 27.713276171870287 25.539789925593624 23.65799597216695 18 23.288545319589062 26.95518513820556 26.613620064078418 23.14264947812696 19 24.37052844793287 26.46507758527146 26.665846806766258 22.49854716002942 20 24.924247429621126 25.81866549121376 26.1714942703905 23.085592808774614 21 25.36855102030973 25.495975190388688 25.781883774880747 23.353590014420828 22 24.410567802123033 24.921096399584712 26.907176574804954 23.761159223487304 23 24.746349937256635 25.38164459958544 25.943441268640953 23.928564194516973 24 24.205030666444188 25.806061143845348 26.13404115158068 23.854867038129786 25 23.883127635012684 25.477881031977905 26.834002738984115 23.804988594025296 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1630.0 1 1630.0 2 1661.5 3 1693.0 4 1693.0 5 1693.0 6 2175.5 7 2658.0 8 2658.0 9 2658.0 10 3318.0 11 3978.0 12 3978.0 13 3978.0 14 5463.0 15 6948.0 16 6948.0 17 6948.0 18 12083.5 19 17219.0 20 17219.0 21 17219.0 22 26025.0 23 34831.0 24 34831.0 25 34831.0 26 50639.0 27 66447.0 28 66447.0 29 66447.0 30 85599.0 31 104751.0 32 104751.0 33 104751.0 34 125461.0 35 146171.0 36 146171.0 37 146171.0 38 169614.5 39 193058.0 40 193058.0 41 193058.0 42 214905.5 43 236753.0 44 236753.0 45 236753.0 46 255727.5 47 274702.0 48 274702.0 49 274702.0 50 278264.5 51 281827.0 52 281827.0 53 281827.0 54 264345.5 55 246864.0 56 246864.0 57 246864.0 58 217973.5 59 189083.0 60 189083.0 61 189083.0 62 158717.5 63 128352.0 64 128352.0 65 128352.0 66 101814.0 67 75276.0 68 75276.0 69 75276.0 70 55967.5 71 36659.0 72 36659.0 73 36659.0 74 26203.5 75 15748.0 76 15748.0 77 15748.0 78 10885.0 79 6022.0 80 6022.0 81 6022.0 82 4115.5 83 2209.0 84 2209.0 85 2209.0 86 1490.0 87 771.0 88 771.0 89 771.0 90 477.5 91 184.0 92 184.0 93 184.0 94 101.5 95 19.0 96 19.0 97 19.0 98 12.0 99 5.0 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.033801735702251555 2 0.05424672277465478 3 0.014803327903839123 4 0.010945783173197008 5 0.009547423208339241 6 7.715089461284234E-4 7 0.0038093254215090908 8 0.0019287723653210586 9 0.0065096067329585726 10 0.003857544730642117 11 0.01022249353620161 12 0.00858303702567871 13 0.006991799824288838 14 0.015574836849967548 15 0.006798922587756732 16 0.029606655807678246 17 0.03775571905115972 18 0.0222291015103252 19 0.01605702994129781 20 0.01596059132303176 21 0.022566636674256384 22 0.006027413641628308 23 0.016008810632164788 24 0.012344143138054774 25 0.4623749552765908 >>END_MODULE >>Sequence Length Distribution pass #Length Count 25 2073858.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.660296043354215 #Duplication Level Percentage of deduplicated Percentage of total 1 70.6572785270014 32.9688953368762 2 12.011766059366977 11.209451206671549 3 5.7257877509326 8.015008546197793 4 3.2740738363808792 6.1107701789332936 5 2.068342349856603 4.825473318165802 6 1.4416995737976699 4.036207735138612 7 0.989923381924067 3.233308264257076 8 0.73958340228106 2.760734439934832 9 0.5403579246340645 2.269193465951814 >10 2.4377813228702436 18.88619154802258 >50 0.08709819188992095 2.7130845348923938 >100 0.02405376390718068 1.7997554614863225 >500 0.0013952808117359832 0.46995227730520794 >1k 8.586343456836805E-4 0.70197368616657 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTATCAACGCAGAGTACTTTTTTTT 3561 0.17170895982270726 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 0.0 0.0 12 0.0 0.0 0.0 0.0 0.0 13 0.0 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCGCGCT 55 1.9659547E-4 13.81378 9 GCGACGA 60 4.099059E-4 12.664464 13 CCCTATA 70 1.09030865E-4 12.215403 2 GGTATCA 1605 0.0 11.95921 1 GTTCTAG 180 3.6379788E-12 11.085951 1 TCGCGCA 115 8.8480374E-7 10.7364855 18 GACCGTC 160 5.475158E-10 10.68358 7 GTGCTAT 135 5.66979E-8 10.558049 1 GTATCAA 3230 0.0 10.178875 1 CCGTCTA 75 0.0026552174 10.130105 9 TAGAACC 160 6.211849E-9 10.090049 4 TAGCCTA 95 1.6505225E-4 9.996332 5 ACGCATA 115 1.0311542E-5 9.909409 7 TCGTTCG 125 2.5762656E-6 9.878283 14 CGTTCGC 125 2.5762656E-6 9.878283 15 TGGACCG 125 2.5826248E-6 9.876377 5 AACGCAT 125 2.5826248E-6 9.876377 6 CTAAGCT 155 4.087451E-8 9.802855 4 GTCTATA 90 0.0011114406 9.502243 1 CTAGATC 120 1.7081069E-5 9.496516 4 >>END_MODULE