##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921165_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1947475 Sequences flagged as poor quality 0 Sequence length 25 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.14103133544718 31.0 30.0 33.0 25.0 34.0 2 29.416890589096138 31.0 30.0 34.0 25.0 34.0 3 29.55918355819715 31.0 30.0 34.0 25.0 34.0 4 33.2105064249862 35.0 35.0 37.0 28.0 37.0 5 32.67927341814401 35.0 33.0 37.0 25.0 37.0 6 32.59621253161144 35.0 33.0 37.0 25.0 37.0 7 32.43594603268335 35.0 33.0 37.0 23.0 37.0 8 32.36469222968202 35.0 33.0 37.0 23.0 37.0 9 33.70752384497875 38.0 34.0 39.0 22.0 39.0 10 33.58845222660111 38.0 34.0 39.0 20.0 39.0 11 33.583651138012044 38.0 34.0 39.0 21.0 39.0 12 33.45382559468029 38.0 34.0 39.0 18.0 39.0 13 33.418042850357516 38.0 34.0 39.0 18.0 39.0 14 34.33187640406167 39.0 34.0 41.0 17.0 41.0 15 34.30343804156664 39.0 34.0 41.0 17.0 41.0 16 34.2856796621266 39.0 34.0 41.0 17.0 41.0 17 34.26493125714066 39.0 34.0 41.0 17.0 41.0 18 34.21271184482471 39.0 34.0 41.0 17.0 41.0 19 34.24783424690946 39.0 34.0 41.0 18.0 41.0 20 34.176516771717225 39.0 34.0 41.0 16.0 41.0 21 34.10328707685593 39.0 34.0 41.0 11.0 41.0 22 34.011058935288 39.0 34.0 41.0 10.0 41.0 23 33.876813823027256 39.0 34.0 41.0 2.0 41.0 24 33.788601137370186 39.0 34.0 41.0 2.0 41.0 25 33.6438578158898 39.0 34.0 41.0 2.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 80065.0 3 1.0 4 1308.0 5 11018.0 6 12300.0 7 9216.0 8 6966.0 9 6055.0 10 5384.0 11 4861.0 12 4548.0 13 4289.0 14 4119.0 15 4121.0 16 4210.0 17 4320.0 18 4858.0 19 5726.0 20 7142.0 21 8965.0 22 11051.0 23 13634.0 24 15802.0 25 18047.0 26 20042.0 27 22220.0 28 25597.0 29 30474.0 30 38445.0 31 48597.0 32 61511.0 33 78891.0 34 103355.0 35 135773.0 36 185071.0 37 277302.0 38 672191.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.246652905475415 19.078078998009836 9.442024128686327 31.233243967828418 2 14.889587799586646 21.3966803168205 34.72583730214765 28.987894581445207 3 17.859322347332952 24.04726925289718 28.459151804060163 29.634256595709708 4 13.296368719963256 16.790315901531365 32.450988149197016 37.462327229308364 5 14.473169676418493 37.76126466614904 32.26519388118473 15.500371776247738 6 33.84353793898908 34.98411612636846 16.220911661423397 14.95143427321906 7 28.934551028425155 32.67816750068682 19.443872455254326 18.943409015633705 8 27.494539771977383 34.696597223898365 18.763926598512885 19.044936405611363 9 26.699721586923726 16.06025471048018 19.060717876461002 38.17930582613509 10 17.03112243064078 28.985298874950576 30.534642382167632 23.44893631224101 11 35.182245594394104 23.065628955929817 21.674425531587097 20.07769991808898 12 23.114221924628442 25.43851721616537 28.402205525933105 23.045055333273083 13 28.454485466108988 21.50497215439483 25.32083426408777 24.719708115408416 14 22.64976126263371 21.306430058146795 25.461739594642296 30.582069084577203 15 24.368572215123038 28.404851321201264 22.835765088730653 24.39081137494504 16 24.255622023759088 27.601028502585894 24.369215379061334 23.774134094593684 17 22.851176077011516 27.714409979414096 25.86029210521046 23.574121838363933 18 23.099740604687398 27.059589024563724 26.661175079767524 23.179495290981354 19 24.180074678487593 26.418375160030834 26.71807510061465 22.683475060866922 20 24.4498281587543 25.834109139345713 26.446555138882545 23.269507563017445 21 24.817969984628178 25.44655582313724 26.299581576205057 23.43589261602953 22 24.539916679461378 25.486862354737216 26.08370360975219 23.88951735604921 23 24.162350420634993 25.346968665234936 26.316724644558036 24.17395626957203 24 23.911531820791645 26.0076849361078 26.26985814400884 23.810925099091715 25 23.932647380148506 25.70925378416135 26.409609105442154 23.948489730247985 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1646.0 1 1646.0 2 1772.0 3 1898.0 4 1898.0 5 1898.0 6 2180.0 7 2462.0 8 2462.0 9 2462.0 10 3130.5 11 3799.0 12 3799.0 13 3799.0 14 5192.5 15 6586.0 16 6586.0 17 6586.0 18 11131.0 19 15676.0 20 15676.0 21 15676.0 22 23784.0 23 31892.0 24 31892.0 25 31892.0 26 45667.5 27 59443.0 28 59443.0 29 59443.0 30 75917.0 31 92391.0 32 92391.0 33 92391.0 34 112233.0 35 132075.0 36 132075.0 37 132075.0 38 154532.0 39 176989.0 40 176989.0 41 176989.0 42 196220.0 43 215451.0 44 215451.0 45 215451.0 46 234524.5 47 253598.0 48 253598.0 49 253598.0 50 260763.0 51 267928.0 52 267928.0 53 267928.0 54 254387.0 55 240846.0 56 240846.0 57 240846.0 58 213888.5 59 186931.0 60 186931.0 61 186931.0 62 157914.0 63 128897.0 64 128897.0 65 128897.0 66 100476.5 67 72056.0 68 72056.0 69 72056.0 70 54044.0 71 36032.0 72 36032.0 73 36032.0 74 24725.0 75 13418.0 76 13418.0 77 13418.0 78 9094.5 79 4771.0 80 4771.0 81 4771.0 82 3300.5 83 1830.0 84 1830.0 85 1830.0 86 1230.5 87 631.0 88 631.0 89 631.0 90 416.5 91 202.0 92 202.0 93 202.0 94 114.0 95 26.0 96 26.0 97 26.0 98 13.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.09792166780061362 2 0.0 3 0.03876814849998074 4 0.05694553203507106 5 0.07250413997612293 6 0.011142633409928241 7 0.004107883284766171 8 0.010885890704630355 9 4.6213686953619433E-4 10 2.567427052978857E-4 11 0.012323649854298515 12 1.5404562317873144E-4 13 0.006675310337745029 14 0.06131015802513511 15 0.02356898034634591 16 0.00914004030860473 17 0.0013350620675490058 18 0.013042529429132595 19 0.009961616965557965 20 0.0019512445602639316 21 0.020847507670188323 22 0.00287551829933632 23 0.009294085931783463 24 0.014839728366217796 25 0.17042580777673655 >>END_MODULE >>Sequence Length Distribution pass #Length Count 25 1947475.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.127945090617146 #Duplication Level Percentage of deduplicated Percentage of total 1 61.495746853452694 21.602192187745782 2 13.574367612859126 9.536792802887343 3 7.150028485551909 7.534974241104478 4 4.464864899047383 6.2736611604304136 5 3.0202406410908473 5.304742370034481 6 2.115923896123351 4.459683506336747 7 1.5560780388292312 3.8263276733295917 8 1.1467421825714594 3.222615713797175 9 0.9121031121139491 2.8836277235387837 >10 4.337012938972837 25.35419120254171 >50 0.1560281898677812 3.7360250961092465 >100 0.06539013643188733 3.881871095279168 >500 0.003993820361105318 1.0065885088371118 >1k 0.0013312734537017726 1.0685260218731347 >5k 1.479192726335303E-4 0.3081806961549097 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTATCAACGCAGAGTACTTTTTTTT 5931 0.30454819702435204 No Hit GGTATCAACGCAGAGTACTTTTTTT 4235 0.21746107138730922 No Hit TATCAACGCAGAGTACTTTTTTTTT 4066 0.20878316794824067 No Hit ACGCAGAGTACTTTTTTTTTTTTTT 2963 0.15214572715952707 No Hit CTTATACACATCTCCGAGCCCACGA 2409 0.12369863541252134 No Hit GGTATCAACGCAGAGTACATGGGGG 2235 0.11476398926815491 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.0539416423830857E-4 2 0.0 0.0 0.0 0.0 2.0539416423830857E-4 3 0.0 0.0 0.0 0.0 2.0539416423830857E-4 4 0.0 0.0 0.0 0.0 2.0539416423830857E-4 5 0.0 0.0 0.0 0.0 2.567427052978857E-4 6 0.0 0.0 0.0 0.0 3.5943978741704E-4 7 0.0 0.0 0.0 0.0 3.5943978741704E-4 8 0.0 0.0 0.0 0.0 4.1078832847661715E-4 9 0.0 0.0 0.0 5.1348541059577143E-5 4.1078832847661715E-4 10 0.0 0.0 0.0 5.1348541059577143E-5 4.1078832847661715E-4 11 0.0 0.0 0.0 5.1348541059577143E-5 4.1078832847661715E-4 12 0.0 0.0 0.0 5.1348541059577143E-5 9.756222801319658E-4 13 0.0 0.0 0.0 5.1348541059577143E-5 0.0011810164443702743 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACCGAC 25 0.006055172 18.987724 7 CTTATAC 320 0.0 14.567404 1 CCCTACG 55 1.9372375E-4 13.837683 1 GGTATCA 1700 0.0 13.486652 1 TATACAC 405 0.0 12.907815 3 TAGACCG 55 0.0030707894 12.089929 5 GTCCTAT 165 7.2759576E-12 11.531402 1 TTATACA 400 0.0 10.9305725 2 ACTATCT 110 6.056156E-6 10.362264 8 TAGGACA 235 0.0 10.111538 4 GTATTAT 160 6.031769E-9 10.107994 1 CTATTAG 95 1.6210714E-4 10.014112 1 GATCTCG 115 1.0160053E-5 9.921672 19 GTATCAA 3330 0.0 9.799094 1 GTATAAT 80 0.0044640754 9.513407 1 TAGGACT 210 6.548362E-11 9.504847 4 CTAGGAC 210 6.548362E-11 9.504847 3 GTAGGAC 100 2.7415602E-4 9.504846 3 TAGACAG 225 2.7284841E-11 9.288136 5 TAATCTG 145 1.7080984E-6 9.171669 5 >>END_MODULE