Basic Statistics
Measure | Value |
---|---|
Filename | SRR2921106_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5225777 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7149 | 0.13680262284441147 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6001 | 0.11483459780239379 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 8975 | 0.0 | 43.7304 | 1 |
GTATCAA | 13890 | 0.0 | 40.66678 | 1 |
TCAACGC | 16455 | 0.0 | 33.823963 | 4 |
ATCAACG | 16755 | 0.0 | 33.253906 | 3 |
CAACGCA | 16850 | 0.0 | 33.06674 | 5 |
TATCAAC | 17335 | 0.0 | 32.210964 | 2 |
AACGCAG | 17410 | 0.0 | 32.035965 | 6 |
GTACATG | 18235 | 0.0 | 28.588917 | 1 |
TACATGG | 17975 | 0.0 | 28.212957 | 2 |
ACGCAGA | 19975 | 0.0 | 27.725094 | 7 |
CGCAGAG | 20565 | 0.0 | 26.87234 | 8 |
ACATGGG | 19030 | 0.0 | 25.865255 | 3 |
CATGGGG | 12605 | 0.0 | 23.921211 | 4 |
GCAGAGT | 22825 | 0.0 | 23.352219 | 9 |
GTATAGG | 1615 | 0.0 | 22.529385 | 1 |
GAGTACT | 11980 | 0.0 | 22.147331 | 12-13 |
AGAGTAC | 20275 | 0.0 | 21.359907 | 10-11 |
CAGAGTA | 21520 | 0.0 | 20.649387 | 10-11 |
GTACTTT | 12975 | 0.0 | 20.220953 | 14-15 |
GTATAGA | 1955 | 0.0 | 19.831638 | 1 |