##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2920909_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4787351 Sequences flagged as poor quality 0 Sequence length 125 %GC 48 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.555209342285536 31.0 30.0 34.0 16.0 34.0 2 28.67545183129459 31.0 30.0 34.0 16.0 34.0 3 28.874506172620308 31.0 30.0 34.0 16.0 34.0 4 32.19450422582342 35.0 33.0 37.0 19.0 37.0 5 32.25088091514493 35.0 33.0 37.0 20.0 37.0 6 32.21480208992405 36.0 33.0 37.0 19.0 37.0 7 32.08115218625081 36.0 33.0 37.0 18.0 37.0 8 32.006232674395505 36.0 33.0 37.0 17.0 37.0 9 33.32534088267186 38.0 33.0 39.0 17.0 39.0 10-11 33.30257662327246 38.0 33.0 39.0 17.0 39.0 12-13 33.223179583030365 38.0 33.0 39.0 17.0 39.0 14-15 34.244993630088956 39.0 33.0 41.0 17.0 41.0 16-17 34.205242314591096 39.0 33.0 41.0 16.5 41.0 18-19 34.16480951574263 39.0 33.5 41.0 16.0 41.0 20-21 34.16104052115669 39.0 33.5 41.0 16.0 41.0 22-23 34.06263035653747 39.0 33.0 41.0 16.0 41.0 24-25 34.04545499170627 39.0 33.0 41.0 16.0 41.0 26-27 33.947176737197665 39.0 33.0 41.0 15.5 41.0 28-29 33.81877044319499 39.0 33.0 41.0 11.5 41.0 30-31 33.64929039044766 39.0 33.0 41.0 9.5 41.0 32-33 33.4897521614772 39.0 33.0 41.0 9.0 41.0 34-35 33.41104997314799 38.5 33.0 41.0 8.5 41.0 36-37 33.26074722743329 38.0 32.0 41.0 8.0 41.0 38-39 33.10474414765076 38.0 32.0 41.0 4.5 41.0 40-41 32.94116506184736 38.0 32.0 40.5 2.0 41.0 42-43 32.72661227472145 38.0 31.5 40.0 2.0 41.0 44-45 32.54756367352216 38.0 31.0 40.0 2.0 41.0 46-47 32.30529618571941 38.0 31.0 40.0 2.0 41.0 48-49 32.15347391490617 38.0 31.0 40.0 2.0 41.0 50-51 31.923509055425434 37.5 31.0 40.0 2.0 41.0 52-53 31.695381433281163 37.0 30.0 40.0 2.0 41.0 54-55 31.4258099103241 37.0 30.0 40.0 2.0 41.0 56-57 31.126514746881938 36.0 29.5 40.0 2.0 41.0 58-59 30.832236345319153 36.0 29.0 40.0 2.0 41.0 60-61 30.536553618065607 35.5 29.0 39.0 2.0 41.0 62-63 30.21133681236241 35.0 28.5 39.0 2.0 41.0 64-65 29.90950475534382 35.0 28.0 38.5 2.0 40.0 66-67 29.551843702289638 35.0 28.0 38.0 2.0 40.0 68-69 29.221278636139274 34.5 28.0 37.5 2.0 40.0 70-71 28.888501072931568 34.0 27.0 37.0 2.0 39.0 72-73 28.969306512098235 34.0 28.0 36.5 2.0 39.0 74-75 28.990012221790295 35.0 29.0 36.0 2.0 39.0 76-77 28.75420425617424 34.5 29.0 36.0 2.0 38.5 78-79 28.50102029285089 34.0 28.5 35.0 2.0 37.0 80-81 28.267023245214315 34.0 28.0 35.0 2.0 37.0 82-83 28.05796744379094 34.0 28.0 35.0 2.0 36.5 84-85 27.85776852376189 34.0 27.5 35.0 2.0 36.0 86-87 27.690443107263285 34.0 27.0 35.0 2.0 36.0 88-89 27.514122946071847 34.0 27.0 35.0 2.0 35.5 90-91 27.35813542813134 34.0 27.0 35.0 2.0 35.0 92-93 27.207138770480796 34.0 26.0 35.0 2.0 35.0 94-95 27.107492431618237 34.0 26.0 35.0 2.0 35.0 96-97 27.018369240107944 34.0 25.5 35.0 2.0 35.0 98-99 26.887547831775862 34.0 25.0 35.0 2.0 35.0 100-101 26.765992090406574 34.0 25.0 35.0 2.0 35.0 102-103 25.430464989928666 31.5 22.0 34.0 2.0 35.0 104-105 26.433312702578107 33.5 24.5 35.0 2.0 35.0 106-107 26.593034435954245 34.0 25.0 35.0 2.0 35.0 108-109 26.526475288734837 34.0 25.0 35.0 2.0 35.0 110-111 26.422044466762515 34.0 24.0 35.0 2.0 35.0 112-113 26.30632431171226 34.0 24.0 35.0 2.0 35.0 114-115 26.191047199171315 34.0 24.0 35.0 2.0 35.0 116-117 25.967920672622498 34.0 23.0 35.0 2.0 35.0 118-119 25.76554685461751 34.0 20.0 35.0 2.0 35.0 120-121 25.583353403583736 34.0 19.0 35.0 2.0 35.0 122-123 25.279001477017246 34.0 9.5 35.0 2.0 35.0 124-125 23.97629022814496 31.5 2.0 34.5 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 294770.0 3 41192.0 4 26911.0 5 24440.0 6 28884.0 7 30246.0 8 30554.0 9 31951.0 10 34014.0 11 35573.0 12 35487.0 13 34492.0 14 34093.0 15 30389.0 16 24768.0 17 22949.0 18 22203.0 19 22287.0 20 23095.0 21 24938.0 22 29717.0 23 38072.0 24 49492.0 25 61367.0 26 69248.0 27 78695.0 28 91258.0 29 104585.0 30 123511.0 31 148211.0 32 181704.0 33 228524.0 34 303478.0 35 440606.0 36 755834.0 37 978066.0 38 251532.0 39 215.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.61492489157911 17.25837577163642 11.746616809899209 25.38008252688526 2 16.637058359604953 19.82456764270876 37.69521713572055 25.84315686196574 3 19.670016346639148 23.67898146962396 28.1256983731202 28.52530381061669 4 13.380239704470617 15.815922128785559 34.59029689122217 36.213541275521656 5 14.68293367822545 37.09911470390006 33.24159320237226 14.976358415502233 6 34.357244815721444 34.70916472294123 16.488333255960725 14.445257205376603 7 29.47056337553985 31.666890068235414 20.119419813927752 18.743126742296983 8 26.961098972327058 34.465160528159075 19.30822870166121 19.265511797852657 9 26.48190862968788 16.080920666206225 18.472144418982833 38.965026285123066 10-11 25.853608716004985 25.850378537228696 26.497219223766088 21.79879352300023 12-13 26.252521390400602 23.285240252522645 26.506369404781488 23.955868952295262 14-15 23.56864883125484 24.64354192414403 23.786330439552536 28.001478805048592 16-17 23.92577124678434 27.316123486448962 24.71494379358887 24.043161473177832 18-19 24.124885706055416 26.327617974136437 26.098423861941694 23.449072457866453 20-21 24.913328272714075 25.667184956854616 25.658802848955148 23.76068392147616 22-23 24.51457634756415 25.355397686954912 25.651410021969184 24.478615943511755 24-25 24.21019518333187 25.576875645350754 25.86436242480488 24.348566746512493 26-27 24.014431473807676 25.701521266648424 25.79097065019187 24.493076609352027 28-29 24.128434479548172 25.985529946075932 25.64586286350461 24.240172710871292 30-31 24.24270547686787 25.82654470440958 25.477158414022437 24.45359140470011 32-33 24.022187132963822 25.88806489406102 25.433863745090463 24.6558842278847 34-35 24.38081931284147 25.86033304266492 25.538977735593754 24.219869908899856 36-37 24.42650479451754 25.632623163735634 25.538992573311038 24.401879468435787 38-39 24.225285928158108 25.807856528593653 25.504651649890235 24.462205893358004 40-41 24.380773677788458 25.72394715272016 25.65869391937698 24.236585250114402 42-43 24.271163438687278 25.794429526209857 25.480653602982734 24.45375343212014 44-45 24.15735057853043 25.785668030513264 25.611473451813936 24.44550793914237 46-47 24.309082829377353 25.874314506992675 25.433504565494214 24.38309809813576 48-49 24.126393865570243 25.923527380711526 25.350734115074065 24.599344638644165 50-51 24.031044775869827 26.06637904240392 25.426404258472225 24.476171923254025 52-53 24.384492944925373 25.767613648833805 25.308158511081917 24.539734895158904 54-55 24.080029029711977 25.873566908803898 25.388184606226005 24.658219455258124 56-57 24.05954032330215 25.982559359716916 25.31438889404509 24.64351142293584 58-59 24.091403585958393 25.580035092522824 25.435693840206753 24.89286748131203 60-61 24.017191403295012 25.689247889692744 25.574658043791214 24.71890266322103 62-63 24.008229093618745 25.619653675762844 25.66484366916828 24.707273561450137 64-65 23.92249649495499 25.702701957056618 25.46280388552109 24.9119976624673 66-67 23.930569025483244 25.777790783225203 25.442633435890578 24.849006755400975 68-69 24.236765757141246 25.40833538871865 25.496197885531064 24.85870096860904 70-71 24.042959632229632 25.44527802188718 25.51233974343901 24.999422602444174 72-73 24.016973903360316 25.51974140577795 25.502268823206936 24.9610158676548 74-75 23.861672987614035 25.697229703864892 25.592777576955193 24.848319731565873 76-77 23.948238532347887 25.400301252795245 25.741802608767266 24.909657606089606 78-79 23.956672974723045 25.5402083205312 25.633052543308843 24.870066161436917 80-81 24.042394965676205 25.558979156581884 25.561215574834733 24.837410302907177 82-83 23.958362618032798 25.50074876513063 25.720429734435807 24.820458882400764 84-85 23.841633380464764 25.540873128804044 25.65311901962725 24.964374471103948 86-87 23.872929136973674 25.42909595536455 25.731753617997978 24.966221289663793 88-89 23.941905118912 25.366834267481536 25.552538743210214 25.138721870396253 90-91 23.848959557489135 25.401672897244122 25.634474345387016 25.114893199879734 92-93 23.98297374645504 25.35917757995373 25.75829048589321 24.899558187698016 94-95 23.807266353570068 25.194891084543503 25.913734038035834 25.084108523850595 96-97 23.928827073090446 24.99454003019964 25.832062823614237 25.244570073095673 98-99 23.752434647880346 25.281830836396573 25.71196110540616 25.25377341031692 100-101 23.726833637728344 25.23699027419794 25.812185037893155 25.223991050180555 102-103 23.548541982431583 25.24579115079757 25.89491239041945 25.310754476351395 104-105 23.472945258762877 25.38098849017431 25.682728135160804 25.46333811590201 106-107 23.418015980671036 25.484833411014247 25.657316392623724 25.439834215690986 108-109 23.44793972163024 25.476339343704318 25.749950021271655 25.325770913393786 110-111 23.41001162260975 25.620052800781405 25.693837195047582 25.27609838156126 112-113 23.414118630929632 25.796228834997187 25.66264396664496 25.12700856742822 114-115 23.47447786063456 25.9414352756422 25.489729868251892 25.094356995471344 116-117 23.271777081416754 25.899195157441067 25.66152380988215 25.167503951260024 118-119 23.40124010948413 25.8464065983105 25.49414694659879 25.258206345606578 120-121 23.36344721719871 26.019424050807537 25.501183903923184 25.115944828070564 122-123 23.36562610027817 26.048055290829815 25.429825022524188 25.156493586367834 124-125 23.43193753504059 26.13045488695242 25.22100917734207 25.216598400664918 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2765.0 1 2099.0 2 1115.5 3 709.5 4 559.5 5 501.5 6 497.5 7 538.5 8 619.0 9 656.5 10 672.0 11 750.0 12 862.0 13 953.0 14 1093.5 15 1270.0 16 1414.0 17 1657.0 18 1999.5 19 2343.0 20 2798.0 21 3458.0 22 4471.5 23 5711.0 24 7063.0 25 9198.5 26 12243.5 27 15957.0 28 19830.0 29 24166.0 30 28944.0 31 35751.0 32 45227.0 33 50188.0 34 53121.0 35 59269.0 36 67154.5 37 75250.0 38 85226.0 39 95310.5 40 103508.0 41 113281.5 42 123059.0 43 135706.0 44 147630.0 45 157085.0 46 168283.5 47 177955.0 48 187042.5 49 195244.0 50 203627.5 51 210698.0 52 211325.5 53 213413.0 54 213004.0 55 204206.0 56 192599.5 57 178511.0 58 165110.0 59 149532.0 60 127654.5 61 106509.0 62 88085.0 63 68340.5 64 51537.0 65 40087.0 66 30877.5 67 23577.0 68 17930.5 69 13640.0 70 10697.5 71 8275.0 72 6379.5 73 5305.5 74 4275.0 75 3281.5 76 2439.5 77 1616.5 78 1117.0 79 784.0 80 518.0 81 359.5 82 284.5 83 215.5 84 149.0 85 115.0 86 95.5 87 71.0 88 41.0 89 37.5 90 33.0 91 25.0 92 15.5 93 14.5 94 17.0 95 13.0 96 14.5 97 13.0 98 10.5 99 12.5 100 21.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.16836033121448585 2 0.14958167888671625 3 0.17519083100445318 4 0.14722129210914345 5 0.1727886674697552 6 0.11064574124604609 7 0.10924621988235247 8 0.09819626762274168 9 0.10419123227020538 10-11 0.09053023269027068 12-13 0.07895807096659509 14-15 0.07851941501678068 16-17 0.0779763171741533 18-19 0.07588747931789418 20-21 0.07000740075252472 22-23 0.061035842159891766 24-25 0.06540151327947334 26-27 0.07603369796783233 28-29 0.07106226386993558 30-31 0.06784545357129652 32-33 0.07681701216392949 34-35 0.0741432997079178 36-37 0.07640968878195896 38-39 0.0722111246908781 40-41 0.07686923311033597 42-43 0.07692145405674244 44-45 0.06962096574911679 46-47 0.06690547653597992 48-49 0.058800785653694496 50-51 0.06475397354403302 52-53 0.06696814167166769 54-55 0.06866010033523759 56-57 0.07242000847650402 58-59 0.05965720917476074 60-61 0.0696000773705542 62-63 0.06487930381540856 64-65 0.05888433916794487 66-67 0.06331267542321421 68-69 0.066237048421977 70-71 0.061672937706050805 72-73 0.05664928266174759 74-75 0.05979298363541758 76-77 0.06953741223486642 78-79 0.06251891703783574 80-81 0.060889623509953625 82-83 0.06559995287581796 84-85 0.06708302775376195 86-87 0.060628518777921234 88-89 0.05989742552823055 90-91 0.06300979393405665 92-93 0.05723415726150015 94-95 0.06693680910382381 96-97 0.05276404424910561 98-99 0.05267004654557395 100-101 0.05117652747834867 102-103 0.0489519151614327 104-105 0.04732262163355058 106-107 0.05892611592507004 108-109 0.05881122984297579 110-111 0.06562084125438056 112-113 0.0653075155759417 114-115 0.06808566992476632 116-117 0.07173069198393851 118-119 0.06467042002978265 120-121 0.06640415545047773 122-123 0.06369911042662216 124-125 0.07546971174664234 >>END_MODULE >>Sequence Length Distribution pass #Length Count 125 4787351.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 48.16732314218836 #Duplication Level Percentage of deduplicated Percentage of total 1 72.98275847982403 35.15384111505971 2 12.50841970991484 12.04994188331172 3 5.198001333332359 7.5112142974843685 4 2.7572150487995732 5.312306729121348 5 1.668592689796194 4.018582164105327 6 1.0599012651989346 3.063156404379082 7 0.7508604499247823 2.531685654835115 8 0.5241543258695939 2.01976886324293 9 0.38343863038629705 1.6622291173513406 >10 2.001661101646565 16.89513291297005 >50 0.10892445743625083 3.564027599647331 >100 0.052329174575478504 4.3887173225753155 >500 0.0023504660756820906 0.7502632262127655 >1k 0.0013928672194829495 1.079132709703521 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 8.355351425036518E-5 2 0.0 0.0 0.0 0.0 8.355351425036518E-5 3 0.0 0.0 0.0 0.0 8.355351425036518E-5 4 0.0 0.0 0.0 0.0 8.355351425036518E-5 5 0.0 0.0 0.0 0.0 8.355351425036518E-5 6 0.0 0.0 0.0 0.0 1.0444189281295647E-4 7 0.0 0.0 0.0 0.0 1.0444189281295647E-4 8 0.0 0.0 0.0 0.0 1.0444189281295647E-4 9 0.0 0.0 0.0 0.0 1.0444189281295647E-4 10-11 0.0 0.0 0.0 1.0444189281295648E-5 1.0444189281295647E-4 12-13 0.0 0.0 0.0 2.0888378562591296E-5 3.759908141266433E-4 14-15 0.0 0.0 0.0 2.0888378562591296E-5 4.908768962208954E-4 16-17 0.0 0.0 0.0 4.177675712518259E-5 6.579839247216259E-4 18-19 0.0 0.0 0.0 6.266513568777388E-5 6.893164925655127E-4 20-21 0.0 0.0 0.0 1.1488608209425213E-4 7.833141960971736E-4 22-23 0.0 0.0 0.0 2.9243729987627815E-4 7.937583853784692E-4 24-25 0.0 0.0 0.0 6.370955461590345E-4 7.937583853784692E-4 26-27 0.0 0.0 0.0 0.0012010817673489996 8.668677103475387E-4 28-29 0.0 0.0 0.0 0.0034779150306714504 8.982002781914257E-4 30-31 0.0 0.0 0.0 0.013828106608435437 8.982002781914257E-4 32-33 0.0 0.0 0.0 0.04217363631787183 8.982002781914257E-4 34-35 0.0 0.0 0.0 0.08495303561405879 8.982002781914257E-4 36-37 0.0 0.0 0.0 0.15784303260822113 8.982002781914257E-4 38-39 0.0 0.0 0.0 0.2736899801163524 9.817537924417907E-4 40-41 0.0 0.0 0.0 0.4015999662443802 0.001002642171004382 42-43 0.0 0.0 0.0 0.5309303621146642 0.001033974738848269 44-45 0.0 2.0888378562591296E-5 0.0 0.6841361746819901 0.0010548631174108604 46-47 0.0 2.0888378562591296E-5 0.0 0.8699591903748023 0.0011279724423799299 48-49 0.0 2.0888378562591296E-5 0.0 1.0607223075976673 0.0012219701459115907 50-51 0.0 2.0888378562591296E-5 0.0 1.2639557868223994 0.0012950794708806604 52-53 0.0 2.0888378562591296E-5 0.0 1.4664895053652844 0.0014412981208187993 54-55 0.0 2.0888378562591296E-5 0.0 1.693838617640528 0.0014726306886626863 56-57 0.0 2.0888378562591296E-5 0.0 1.9633300336658 0.0015352958243504602 58-59 0.0 2.0888378562591296E-5 0.0 2.24852951037014 0.001577072581475643 60-61 0.0 2.0888378562591296E-5 0.0 2.549186387210798 0.0016397377171634168 62-63 0.0 2.0888378562591296E-5 0.0 2.855316019234855 0.0016710702850073035 64-65 0.0 2.0888378562591296E-5 0.0 3.181226945757685 0.001691958663569895 66-67 0.0 2.0888378562591296E-5 0.0 3.5574997529949233 0.0017024028528511907 68-69 0.0 2.0888378562591296E-5 0.0 3.9740349099115564 0.0017337354206950774 70-71 0.0 2.0888378562591296E-5 0.0 4.42273816981458 0.001838177313508034 72-73 0.0 2.0888378562591296E-5 0.0 4.877519947879318 0.0019948401527274686 74-75 0.0 2.0888378562591296E-5 0.0 5.344176769156888 0.0021306146133843124 76-77 0.0 2.0888378562591296E-5 0.0 5.858615756396388 0.0021723913705094947 78-79 0.0 2.0888378562591296E-5 0.0 6.423583731378794 0.0022037239383533814 80-81 0.0 2.0888378562591296E-5 0.0 7.020521369751247 0.00225594488475986 82-83 0.0 2.0888378562591296E-5 0.0 7.636519653562064 0.0023603867775728164 84-85 0.0 2.0888378562591296E-5 0.0 8.259912423384037 0.002370830966854112 86-87 0.0 2.0888378562591296E-5 0.0 8.913196462929083 0.0024439402918231814 88-89 0.0 2.0888378562591296E-5 0.0 9.620675400654767 0.0025066054275109553 90-91 0.0 2.0888378562591296E-5 0.0 10.374307210814498 0.0025066054275109553 92-93 0.0 2.0888378562591296E-5 0.0 11.148106750476412 0.002590158941761321 94-95 0.0 4.177675712518259E-5 0.0 11.910637009903807 0.002590158941761321 96-97 0.0 4.177675712518259E-5 0.0 12.701074143090825 0.0027781543488246425 98-99 0.0 6.26651356877739E-5 0.0 13.539554546971802 0.0028825962416375987 100-101 1.0444189281295648E-5 8.355351425036518E-5 0.0 14.440230098022894 0.0028825962416375987 102-103 3.133256784388695E-5 8.355351425036518E-5 0.0 15.365888149834847 0.002913928809481486 104-105 4.177675712518259E-5 8.355351425036518E-5 0.0 16.27091892781624 0.0029452613773253726 106-107 4.177675712518259E-5 8.355351425036518E-5 0.0 17.18569413439708 0.0029452613773253726 108-109 4.177675712518259E-5 8.355351425036518E-5 0.0 18.139561941457814 0.0029452613773253726 110-111 4.177675712518259E-5 8.355351425036518E-5 0.0 19.135331835915103 0.0029661497558879637 112-113 4.177675712518259E-5 1.0444189281295647E-4 0.0 20.163050505383872 0.0029661497558879637 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 10835 0.0 37.401306 1 TCAACGC 12555 0.0 31.499825 4 GTACATG 18190 0.0 31.484549 1 GGTATCA 7655 0.0 30.90666 1 CAACGCA 12775 0.0 30.817493 5 ATCAACG 13000 0.0 30.332151 3 AACGCAG 12960 0.0 30.31006 6 TATCAAC 13155 0.0 30.291712 2 TACATGG 18890 0.0 29.798088 2 ACATGGG 18365 0.0 29.028236 3 CATGGGG 13135 0.0 28.113724 4 ACGCAGA 14505 0.0 26.87305 7 CGCAGAG 15155 0.0 25.561785 8 GTATAGG 1355 0.0 25.509119 1 GCAGAGT 17150 0.0 21.858932 9 ATGGGGA 7325 0.0 20.652987 5 ATGGGGG 6610 0.0 19.733286 5 AGAGTAC 14600 0.0 19.073368 10-11 TAAGGTG 1885 0.0 18.95818 5 CAGAGTA 15940 0.0 18.38452 10-11 >>END_MODULE