##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2920902_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3680812 Sequences flagged as poor quality 0 Sequence length 98 %GC 48 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.247382371063775 31.0 28.0 31.0 16.0 34.0 2 28.250871003463367 31.0 28.0 33.0 16.0 34.0 3 28.33468185824215 31.0 28.0 34.0 16.0 34.0 4 31.76665040213953 35.0 32.0 37.0 19.0 37.0 5 31.719517595574022 35.0 32.0 37.0 19.0 37.0 6 31.848841777303488 35.0 32.0 37.0 19.0 37.0 7 31.67602230160084 35.0 32.0 37.0 18.0 37.0 8 31.617378176337176 35.0 32.0 37.0 18.0 37.0 9 32.84384885726302 37.0 32.0 39.0 17.0 39.0 10-11 32.637414380305216 37.0 32.0 39.0 17.0 39.0 12-13 32.45417668710056 37.0 32.0 39.0 17.0 39.0 14-15 33.16274710580166 38.0 32.0 40.0 16.0 41.0 16-17 33.04367161376348 38.0 32.0 40.0 13.5 41.0 18-19 32.92377415635463 38.0 32.0 40.0 11.0 41.0 20-21 32.8243181124165 38.0 32.0 40.0 10.0 41.0 22-23 32.59359171291552 38.0 31.0 40.0 10.0 41.0 24-25 32.39172076704814 37.0 31.0 40.0 10.0 41.0 26-27 32.424726527733554 38.0 31.0 40.0 9.5 41.0 28-29 32.25104773077245 37.0 31.0 40.0 8.0 41.0 30-31 32.00321002539657 37.0 30.0 40.0 8.0 41.0 32-33 31.74640093001218 37.0 30.0 40.0 2.0 41.0 34-35 31.414137288185323 37.0 30.0 40.0 2.0 41.0 36-37 31.09780002347308 36.5 30.0 40.0 2.0 41.0 38-39 30.89228490887337 36.0 29.0 40.0 2.0 41.0 40-41 30.67989929939372 36.0 29.0 39.5 2.0 41.0 42-43 30.439752424193358 36.0 28.0 39.0 2.0 40.5 44-45 30.15643939435103 35.5 27.5 39.0 2.0 40.0 46-47 29.90315995492299 35.0 27.0 39.0 2.0 40.0 48-49 29.591384455386475 35.0 26.5 39.0 2.0 40.0 50-51 28.493263307118106 34.0 25.0 38.0 2.0 39.5 52-53 28.957042359131627 34.5 26.5 38.5 2.0 39.5 54-55 29.59237459017195 35.0 27.0 39.0 2.0 40.0 56-57 29.540397879598306 35.0 27.0 39.0 2.0 40.0 58-59 29.305104281337922 35.0 26.5 39.0 2.0 40.0 60-61 28.974395323640543 35.0 26.0 39.0 2.0 40.0 62-63 28.574907792085007 34.0 26.0 38.0 2.0 40.0 64-65 28.154986589915485 34.0 25.0 38.0 2.0 40.0 66-67 27.76405083986903 34.0 23.5 37.5 2.0 40.0 68-69 27.313523755084475 33.5 22.5 37.0 2.0 39.5 70-71 26.977543677862386 33.0 22.0 36.5 2.0 39.0 72-73 26.50465617369211 33.0 21.0 36.0 2.0 39.0 74-75 26.047958982963543 32.5 20.0 35.5 2.0 38.5 76-77 25.615531708764262 32.0 18.0 35.0 2.0 37.5 78-79 25.13657394075003 32.0 15.0 35.0 2.0 37.0 80-81 24.66190299857749 31.5 9.0 35.0 2.0 36.0 82-83 24.15923959169879 31.0 4.5 34.5 2.0 36.0 84-85 23.726320034818407 31.0 2.0 34.0 2.0 35.5 86-87 23.247207817188162 31.0 2.0 34.0 2.0 35.0 88-89 22.689717241739054 30.0 2.0 34.0 2.0 35.0 90-91 22.159436423267472 30.0 2.0 34.0 2.0 35.0 92-93 21.584671534433163 29.5 2.0 34.0 2.0 35.0 94-95 20.913093089242267 29.0 2.0 34.0 2.0 35.0 96-97 20.243912348688276 29.0 2.0 34.0 2.0 35.0 98 19.83074875869781 29.0 2.0 34.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 213794.0 3 36080.0 4 26542.0 5 21278.0 6 19676.0 7 20120.0 8 22694.0 9 26026.0 10 28618.0 11 30493.0 12 31086.0 13 30741.0 14 29420.0 15 31182.0 16 33521.0 17 35645.0 18 36829.0 19 36962.0 20 38196.0 21 40400.0 22 43815.0 23 48548.0 24 54890.0 25 62849.0 26 72494.0 27 83055.0 28 94699.0 29 109714.0 30 126289.0 31 146679.0 32 173649.0 33 208495.0 34 255994.0 35 317757.0 36 394423.0 37 424955.0 38 248847.0 39 24351.0 40 6.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.24417548243651 17.419890296884635 11.858038899303166 25.477895321375687 2 16.383584946934914 19.53963610572527 38.68458918208709 25.39218976525273 3 20.640814144931255 22.715984838583193 28.3016283931197 28.341572623365852 4 13.346247476022382 14.862060598287648 36.28136817452733 35.510323751162645 5 14.464714240799312 36.518188060823334 34.29659325934539 14.72050443903196 6 34.2595815714481 34.37844004101079 16.970212284922283 14.391766102618828 7 29.760506051202906 30.91950025269954 20.40738969529327 18.912604000804293 8 26.890665658097905 34.05438391854503 19.84731268864814 19.20763773470892 9 26.778683616549827 15.730822438092465 19.168406319040475 38.322087626317234 10-11 25.952999766491708 25.00149763170431 27.43088039145716 21.61462221034682 12-13 26.584828794027516 22.281887746611602 27.225592058708735 23.907691400652148 14-15 23.415613614995987 24.12090228154139 24.82962780227574 27.63385630118688 16-17 23.728398878877226 26.967235741168004 25.584742253700217 23.719623126254554 18-19 23.600662644290985 26.3458314518506 26.949690589796088 23.103815314062327 20-21 24.267739538917787 25.67163610979132 26.7067430401627 23.353881311128195 22-23 23.726614297250396 25.58245939552769 26.59679787211911 24.094128435102803 24-25 23.630011023470068 25.717184787883152 26.783185606148134 23.869618582498646 26-27 23.527984414972163 25.916293958463577 26.7044764814225 23.851245145141757 28-29 23.457435971457304 26.266377928815597 26.59900273719242 23.677183362534674 30-31 23.867224078903913 25.972945754239372 26.44164500034657 23.718185166510146 32-33 23.50907898744895 25.959874361802466 26.46748409210533 24.063562558643252 34-35 23.905192793618525 25.966680702263282 26.499333638581433 23.628792865536756 36-37 23.863120371441383 25.80282519522755 26.546849626956732 23.78720480637434 38-39 23.721283669880854 25.96910917167186 26.50387152272068 23.805735635726606 40-41 23.85593795880256 25.805427785714336 26.6321614152295 23.70647284025361 42-43 23.803931745397627 25.72874984445914 26.443282708877724 24.024035701265504 44-45 23.71280690040396 25.843041317444087 26.444037202818375 24.00011457933357 46-47 23.665040813200445 25.818865856381564 26.472594532314673 24.043498798103318 48-49 23.672088594802183 25.84782922385714 26.432874827572757 24.04720735376792 50-51 23.477704309989996 25.986257544344117 26.58713197498089 23.948906170684996 52-53 23.58168145776268 25.908126714695424 26.58009899790279 23.930092829639108 54-55 23.365752218113872 25.73325971235962 26.83326186858438 24.067726200942133 56-57 23.348901577898022 25.771656772459238 26.665805351739824 24.213636297902912 58-59 23.357900806264713 25.597755384794397 26.762253874557068 24.282089934383826 60-61 23.256597925809753 25.574785678512924 27.037092668437744 24.131523727239575 62-63 23.168392432863165 25.511922593067315 27.001910839406694 24.317774134662823 64-65 23.15522274365664 25.494513202553048 26.86102346618653 24.48924058760378 66-67 23.06193156915339 25.550357013234283 26.78784728615753 24.599864131454797 68-69 23.3096287848611 25.338257040428235 26.77230264701549 24.57981152769517 70-71 23.12917795696813 25.185021860641683 26.837755640787332 24.84804454160285 72-73 23.23750592891249 25.14795525288354 26.877241278891816 24.73729753931215 74-75 23.084661397213075 25.347820195912877 26.803303872702156 24.764214534171888 76-77 23.146845016018265 25.062194047609477 26.916831383829997 24.874129552542264 78-79 23.213979996641392 25.111567467716995 26.853464820739635 24.820987714901978 80-81 23.308452519344307 25.0676643531795 26.80671287097127 24.81717025650492 82-83 23.36877624154126 25.047294245663426 26.83191331312737 24.752016199667942 84-85 23.270576918777465 24.98871235201321 26.87856181186926 24.86214891734006 86-87 23.23941665414947 24.888578783503036 26.922457266838716 24.949547295508776 88-89 23.271183315823983 24.75188266443245 26.867173292401812 25.10976072734175 90-91 23.328199444820196 24.672181200042917 26.91261432808888 25.087005027048008 92-93 23.574957014956055 24.505107971423552 26.90265988575582 25.017275127864576 94-95 23.4628962065546 24.37528680488924 27.02707492686561 25.134742061690556 96-97 23.584484323126386 24.201405399981677 27.014004920972152 25.20010535591978 98 23.667871768445963 24.119757670936327 26.93909601007705 25.27327455054066 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 94.0 1 80.5 2 108.5 3 169.5 4 165.5 5 182.5 6 333.5 7 595.5 8 891.0 9 1064.5 10 1101.0 11 1178.5 12 1347.0 13 1511.0 14 1690.5 15 1885.0 16 2064.5 17 2104.0 18 2140.5 19 2227.0 20 2261.0 21 2433.0 22 2656.5 23 3041.0 24 3691.0 25 4747.0 26 6333.5 27 8261.0 28 10857.5 29 14704.5 30 20102.0 31 27570.5 32 35469.0 33 43137.5 34 52143.0 35 62009.5 36 71996.0 37 81225.5 38 90372.0 39 99341.0 40 107400.0 41 115068.5 42 123951.0 43 133985.0 44 142196.5 45 149918.5 46 158356.0 47 166405.0 48 171271.0 49 171159.5 50 170120.0 51 168544.0 52 164090.0 53 159417.0 54 152479.5 55 143022.5 56 131500.0 57 118676.0 58 107341.5 59 92593.5 60 76556.5 61 62207.5 62 49511.0 63 37820.5 64 27607.0 65 20604.0 66 15119.0 67 11352.0 68 8680.5 69 6617.0 70 5153.5 71 4167.0 72 3672.5 73 3259.5 74 2635.5 75 1939.5 76 1295.0 77 782.0 78 470.0 79 275.0 80 169.5 81 96.5 82 59.5 83 41.0 84 22.0 85 13.0 86 13.0 87 14.0 88 8.5 89 6.0 90 6.0 91 5.0 92 5.5 93 4.5 94 2.0 95 2.5 96 2.5 97 1.5 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.3904301550853453 2 0.024369622789754002 3 0.018501352418977116 4 0.016545262295384822 5 0.022902555197059776 6 0.02187017429849718 7 0.014996690947540922 8 0.009481603515745982 9 0.0 10-11 1.3583959191613154E-5 12-13 0.0054743355542201015 14-15 0.00327373416517877 16-17 0.005868270370776882 18-19 0.035630724959601304 20-21 0.07700746465725497 22-23 0.09613367919904629 24-25 0.062404708526270836 26-27 0.07244325436887296 28-29 0.055490473297739734 30-31 0.051809220356812576 32-33 0.019588069154306168 34-35 0.34659471877400966 36-37 0.5299781678607872 38-39 0.48312709260891346 40-41 0.49131822000145614 42-43 0.43957691944060173 44-45 0.41375381301734504 46-47 0.4115260437099206 48-49 0.4013516582754023 50-51 0.3981458439061816 52-53 0.45902914900299174 54-55 0.46188178043323047 56-57 0.43123636849695124 58-59 0.4164434369372845 60-61 0.42967421318991567 62-63 0.41147170787315407 64-65 0.45860804626805174 66-67 0.481211754362896 68-69 0.4225154666959356 70-71 0.37893812560924056 72-73 0.3641180261311906 74-75 0.34647246314128516 76-77 0.3438235910989206 78-79 0.3430764733433818 80-81 0.36026018172077245 82-83 0.3554242922485582 84-85 0.3555193799628995 86-87 0.34027817774990954 88-89 0.38578444104181364 90-91 0.3627324622936461 92-93 0.35227281371610397 94-95 0.3599477506593654 96-97 0.35981191106744925 98 0.3551390291055343 >>END_MODULE >>Sequence Length Distribution pass #Length Count 98 3680812.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 50.21428913709857 #Duplication Level Percentage of deduplicated Percentage of total 1 72.14162325820854 36.225403291073185 2 12.157196532516714 12.209299635606527 3 5.544515446586031 8.352417052799405 4 3.044728649517061 6.115555390034294 5 1.8928112753626496 4.752308633151019 6 1.2428795140774007 3.7446186769475505 7 0.8604547749027582 3.024498739945491 8 0.6133441689032086 2.4638913150287314 9 0.459968556117112 2.078729466375457 >10 1.9528365974645037 15.915366826216983 >50 0.06256534844180206 2.147812652510286 >100 0.02576492899429792 2.3563859402764873 >500 9.832116863105374E-4 0.35840803235010915 >1k 3.2773722146767724E-4 0.25530434768438903 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.716791838322631E-5 2 0.0 0.0 0.0 0.0 2.716791838322631E-5 3 0.0 0.0 0.0 0.0 2.716791838322631E-5 4 0.0 0.0 0.0 0.0 2.716791838322631E-5 5 0.0 0.0 0.0 0.0 2.716791838322631E-5 6 0.0 0.0 0.0 0.0 5.433583676645262E-5 7 0.0 0.0 0.0 0.0 8.150375514967894E-5 8 0.0 0.0 0.0 0.0 8.150375514967894E-5 9 0.0 0.0 0.0 2.716791838322631E-5 1.6300751029935787E-4 10-11 0.0 0.0 0.0 4.075187757483946E-5 1.6300751029935787E-4 12-13 0.0 0.0 0.0 5.433583676645262E-5 1.6300751029935787E-4 14-15 0.0 0.0 0.0 8.150375514967894E-5 2.4451126544903677E-4 16-17 0.0 0.0 0.0 9.508771434129208E-5 4.6185461251484726E-4 18-19 0.0 0.0 0.0 1.494235511077447E-4 4.6185461251484726E-4 20-21 0.0 0.0 0.0 3.260150205987157E-4 4.890225308980735E-4 22-23 0.0 0.0 0.0 5.841102452393656E-4 6.927819187722709E-4 24-25 0.0 0.0 0.0 0.0011274686129038917 9.237092250296945E-4 26-27 0.0 0.0 0.0 0.001657243021376805 9.916290209877603E-4 28-29 0.0 0.0 0.0 0.008109623637393053 0.0010052129801793735 30-31 0.0 0.0 0.0 0.03371538671358385 0.0010187969393709866 32-33 0.0 0.0 0.0 0.08491332890677383 0.0010867167353290524 34-35 0.0 0.0 0.0 0.15339006719169573 0.0011682204904787314 36-37 0.0 1.3583959191613154E-5 0.0 0.26515888342028876 0.0011682204904787314 38-39 0.0 2.716791838322631E-5 0.0 0.44300007715688816 0.0011682204904787314 40-41 0.0 2.716791838322631E-5 0.0 0.6463791141737203 0.0011953884088619577 42-43 0.0 2.716791838322631E-5 0.0 0.8618071229935134 0.0012361402864367972 44-45 0.0 2.716791838322631E-5 0.0 1.1250370842085933 0.0012904761232032497 46-47 0.0 2.716791838322631E-5 0.0 1.4362999251252169 0.0013312280007780892 48-49 0.0 2.716791838322631E-5 0.0 1.765466424256387 0.0014398996743109943 50-51 0.0 2.716791838322631E-5 0.0 2.131771467817427 0.0014398996743109943 52-53 0.0 2.716791838322631E-5 0.0 2.5061589670974773 0.0015214034294606734 54-55 0.0 2.716791838322631E-5 0.0 2.920673481829553 0.0016029071846103524 56-57 0.0 2.716791838322631E-5 0.0 3.397239522148917 0.0016164911438019654 58-59 0.0 2.716791838322631E-5 0.0 3.9127779413890194 0.0016300751029935787 60-61 0.0 2.716791838322631E-5 0.0 4.464993050446478 0.001657243021376805 62-63 1.3583959191613154E-5 2.716791838322631E-5 0.0 5.026852770529981 0.0016844109397600312 64-65 2.716791838322631E-5 2.716791838322631E-5 0.0 5.614943115812489 0.0017115788581432575 66-67 2.716791838322631E-5 2.716791838322631E-5 0.0 6.287145336409466 0.0017387467765264837 68-69 2.716791838322631E-5 2.716791838322631E-5 0.0 7.031478380313909 0.0017387467765264837 70-71 2.716791838322631E-5 2.716791838322631E-5 0.0 7.814444204159299 0.0018202505316761628 72-73 2.716791838322631E-5 2.716791838322631E-5 0.0 8.61273273397283 0.002010425960358747 74-75 2.716791838322631E-5 2.716791838322631E-5 0.0 9.414906276115161 0.002010425960358747 76-77 2.716791838322631E-5 2.716791838322631E-5 0.0 10.266280918449517 0.00202400991955036 78-79 2.716791838322631E-5 2.716791838322631E-5 0.0 11.197868839810347 0.0020783457563168127 80-81 2.716791838322631E-5 2.716791838322631E-5 0.0 12.17958157058823 0.002119097633891652 82-83 2.716791838322631E-5 5.433583676645262E-5 0.0 13.17237881206647 0.0021734334706581047 84-85 2.716791838322631E-5 5.433583676645262E-5 0.0 14.156047632967944 0.0021734334706581047 86 2.716791838322631E-5 5.433583676645262E-5 0.0 14.913611453125016 0.0021734334706581047 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 7640 0.0 29.760824 1 GTACATG 10050 0.0 28.623669 1 TACATGG 10320 0.0 27.061527 2 ACATGGG 10670 0.0 25.871944 3 ATCAACG 8725 0.0 25.595316 3 TCAACGC 8735 0.0 25.566015 4 CAACGCA 8765 0.0 25.426195 5 AACGCAG 9235 0.0 24.126925 6 TATCAAC 9290 0.0 24.089003 2 GAGTACA 7575 0.0 21.691868 1 CATGGGG 7510 0.0 20.943594 4 AGTACAT 7220 0.0 20.769463 2 ACGCAGA 10760 0.0 20.365477 7 GGTATCA 5510 0.0 20.215063 1 GTGTAGC 2575 0.0 20.019451 1 CGCAGAG 10915 0.0 19.655468 8 AGAGTAC 8525 0.0 16.804163 10-11 GCAGAGT 12200 0.0 16.72097 9 TAGCCCT 2855 0.0 16.704144 4 GTATAGG 965 0.0 16.216717 1 >>END_MODULE