FastQCFastQC Report
Mon 15 Aug 2016
SRR2920902_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2920902_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3680812
Sequences flagged as poor quality0
Sequence length101
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTACATG99300.029.0199471
GTATCAA82100.028.9601021
TACATGG104300.026.6245172
ACATGGG107250.025.4063643
TCAACGC94450.024.5773414
CAACGCA94700.024.5084535
ATCAACG96550.024.1411083
AACGCAG100800.023.2139666
TATCAAC101950.023.0011712
CATGGGG74200.020.664584
GAGTACA75350.019.8161661
GGTATCA60400.019.7610511
ACGCAGA118400.019.4422747
CGCAGAG120650.019.039328
AGTACAT72450.018.8041522
AGAGTAC86350.017.58746710-11
TATACGA1901.8781821E-417.4864435
TATACCG2202.9395023E-517.2593465
GCAGAGT131150.016.6829159
GTATAAT13150.016.634331
Produced by FastQC (version 0.11.5)