##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2920902_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3680812 Sequences flagged as poor quality 0 Sequence length 101 %GC 48 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.305063393620756 31.0 30.0 34.0 27.0 34.0 2 30.304925108916184 31.0 30.0 34.0 26.0 34.0 3 30.456351207287955 31.0 30.0 34.0 27.0 34.0 4 34.09191395811576 35.0 35.0 37.0 30.0 37.0 5 33.63379765117045 35.0 35.0 37.0 28.0 37.0 6 33.58451042867715 35.0 35.0 37.0 28.0 37.0 7 33.40531165405894 35.0 35.0 37.0 28.0 37.0 8 33.34262304078557 35.0 35.0 37.0 27.0 37.0 9 34.6803903595185 38.0 35.0 39.0 27.0 39.0 10-11 34.494477848909426 37.5 34.0 39.0 27.0 39.0 12-13 34.313174511493656 37.0 34.0 39.0 27.0 39.0 14-15 35.22123297794074 38.0 34.0 40.0 27.0 41.0 16-17 35.095107139402934 38.0 34.0 40.0 26.0 41.0 18-19 35.00879466269943 38.5 34.0 40.0 25.5 41.0 20-21 34.895219587417124 38.0 34.0 40.0 25.0 41.0 22-23 34.751608884126654 38.0 34.0 40.0 25.0 41.0 24-25 34.57677083208814 38.0 33.5 40.0 24.0 41.0 26-27 34.392147982564715 38.0 33.0 40.0 24.0 41.0 28-29 34.335405068229505 38.0 33.0 40.0 23.5 41.0 30-31 34.327055416033204 38.0 33.0 40.0 24.0 41.0 32-33 34.179547882369434 38.0 33.0 40.0 23.0 41.0 34-35 34.01029501099214 38.0 33.0 40.0 22.5 41.0 36-37 33.81580355095561 38.0 33.0 40.0 20.5 41.0 38-39 33.63359307674502 38.0 33.0 40.0 19.0 41.0 40-41 33.41103525526433 38.0 32.0 40.0 18.0 41.0 42-43 33.44573697325481 38.0 32.0 40.0 18.0 41.0 44-45 33.30614997451649 38.0 32.0 40.0 16.5 41.0 46-47 33.06143535719836 38.0 32.0 40.0 15.0 41.0 48-49 32.801152028411124 37.0 31.0 40.0 13.5 41.0 50-51 32.54516992446232 37.0 31.0 40.0 10.0 41.0 52-53 32.29199847750985 37.0 31.0 40.0 8.5 41.0 54-55 32.014900108997686 36.5 31.0 40.0 8.0 41.0 56-57 31.691209983014616 36.0 30.0 39.0 7.0 41.0 58-59 31.37225712696003 36.0 30.0 39.0 3.5 40.5 60-61 31.04091705851861 35.0 29.0 39.0 2.0 40.0 62-63 30.72554113059836 35.0 29.0 39.0 2.0 40.0 64-65 30.330041713621885 35.0 28.5 38.0 2.0 40.0 66-67 29.892900126385157 34.5 28.0 38.0 2.0 40.0 68-69 29.448192953076656 34.0 28.0 37.0 2.0 40.0 70-71 29.01634082370955 34.0 27.5 37.0 2.0 39.0 72-73 28.573318876378366 34.0 26.0 36.0 2.0 39.0 74-75 28.122065185616652 33.5 26.0 36.0 2.0 38.5 76-77 26.658210742629613 31.5 24.5 34.5 2.0 36.0 78-79 27.504184538628976 33.0 26.0 35.0 2.0 37.0 80-81 27.519176746869984 33.0 26.0 35.0 2.0 37.0 82-83 27.173737615504407 33.0 26.0 35.0 2.0 36.0 84-85 26.846604770903813 33.0 25.0 35.0 2.0 36.0 86-87 26.30521974499105 32.5 24.0 35.0 2.0 35.0 88-89 25.929441519968965 32.0 23.5 35.0 2.0 35.0 90-91 25.556262042179824 32.0 21.0 35.0 2.0 35.0 92-93 25.24015882908445 32.0 20.0 34.0 2.0 35.0 94-95 24.852830299401326 32.0 18.5 34.0 2.0 35.0 96-97 24.321689072954555 32.0 9.5 34.0 2.0 35.0 98-99 23.719946033646924 31.0 2.0 34.0 2.0 35.0 100-101 21.503717386272378 28.0 2.0 33.0 2.0 34.5 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 81062.0 3 37019.0 4 20265.0 5 14161.0 6 12485.0 7 12235.0 8 13884.0 9 15988.0 10 18253.0 11 20768.0 12 23183.0 13 25153.0 14 27562.0 15 29513.0 16 31204.0 17 32407.0 18 31652.0 19 30206.0 20 30839.0 21 31911.0 22 34496.0 23 39458.0 24 45252.0 25 53613.0 26 63172.0 27 75242.0 28 88190.0 29 105334.0 30 123651.0 31 145869.0 32 174913.0 33 214105.0 34 269208.0 35 348648.0 36 464523.0 37 549732.0 38 322620.0 39 23035.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.390356089628604 18.719761724978753 12.490928857746523 25.39895332764612 2 16.46557879076682 20.58559361358309 37.63677688510035 25.312050710549737 3 20.40268799207036 23.564491376949263 28.700934254400646 27.331886376579735 4 13.806033414630967 15.825703528838922 35.84130550084993 34.526957555680184 5 14.358785007701226 36.81680320753532 34.328067048073635 14.496344736689812 6 34.143905667515305 35.004040124377624 16.710612594907566 14.141441613199499 7 29.602812459530902 31.150133146735648 20.418870815563206 18.828183578170247 8 26.81311411732353 34.52565110750907 19.753622719284238 18.907612055883163 9 26.457132409994006 15.748151888485392 19.2124427719333 38.582272929587305 10-11 25.88957131971829 25.305859731611257 27.445392123171004 21.359176825499446 12-13 26.4899490537366 22.38609711803154 27.348210407442274 23.77574342078959 14-15 23.285255704118583 24.277393994485053 24.88198187759516 27.5553684238012 16-17 23.662376940826253 27.189408330473135 25.585719188905387 23.562495539795222 18-19 23.48537404936317 26.51045912932875 26.984185247766806 23.01998157354127 20-21 24.251118304813243 25.767824728295214 26.690162912802528 23.290894054089016 22-23 23.63321396151343 25.716880098006257 26.6602487489207 23.98965719155962 24-25 23.586304083021243 25.90503423381203 26.829892192102967 23.67876949106376 26-27 23.508549816590605 26.05870568671071 26.733363545884153 23.69938095081453 28-29 23.470939295532087 26.339102319059148 26.662229298938932 23.52772908646983 30-31 23.815456264118858 26.08216376501765 26.514360778049735 23.588019192813757 32-33 23.524814948784627 26.05570301797151 26.475212227661437 23.944269805582422 34-35 23.868372806220233 26.0318478658718 26.580620582855836 23.51915874505213 36-37 23.82543122482116 25.913272688981433 26.610338525921044 23.650957560276364 38-39 23.68093074322488 26.010125990586037 26.615416182017803 23.69352708417128 40-41 23.80871051312539 25.868897047604023 26.69842831732683 23.62396412194376 42-43 23.7854247161947 25.79950493704386 26.503393708190004 23.911676638571436 44-45 23.602697230606097 25.87614680332628 26.566949699152016 23.95420626691561 46-47 23.5879597356986 25.895637200588002 26.54240815613274 23.97399490758066 48-49 23.53852979862187 25.918960768528308 26.51560702939202 24.0269024034578 50-51 23.444657096551953 26.00166320606949 26.613185574914038 23.940494122464518 52-53 23.599783184872933 25.88276768041776 26.54629532774269 23.971153806966612 54-55 23.310028535267495 25.7702647405497 26.72890789428637 24.19079882989644 56-57 23.31203627202169 25.814377581247573 26.51211082441526 24.36147532231548 58-59 23.26562571742877 25.698872409139728 26.65815193337968 24.377349940051822 60-61 23.223188881541308 25.7600434568701 26.790568022216483 24.22619963937211 62-63 23.041275194317638 25.759208877844326 26.709026603590925 24.490489324247108 64-65 22.973586498944993 25.667945101563845 26.619204454126592 24.739263945364566 66-67 22.934444051857692 25.772511075476313 26.48013209034327 24.812912782322723 68-69 23.158054312453984 25.61135331103115 26.456733380602536 24.773858995912324 70-71 22.9760370086152 25.429278958089224 26.472727776678745 25.121956256616834 72-73 23.04281554609275 25.412229448730848 26.50010151660646 25.044853488569935 74-75 22.83462800559925 25.635979199681536 26.346204463954564 25.183188330764654 76-77 22.886721484269675 25.365906138246036 26.542746018733133 25.20462635875116 78-79 22.88825359649465 25.432326383257497 26.44238056739384 25.23703945285401 80-81 22.905858052953022 25.485632737894115 26.373065012745826 25.23544419640704 82-83 22.930040230905536 25.481380384821726 26.328833752062796 25.259745632209942 84-85 22.759404532130155 25.452451542529797 26.312990839363415 25.475153085976626 86-87 22.655384153132513 25.392615426272553 26.372936677444414 25.57906374315052 88-89 22.650487324052246 25.28722607073642 26.277716888660578 25.784569716550752 90-91 22.598837967149425 25.26440081565951 26.282653996185402 25.854107221005666 92-93 22.7013330254335 25.176795894172066 26.244584886634836 25.877286193759602 94-95 22.514312572038307 25.10215600414859 26.367422011849428 26.016109411963672 96-97 22.44783239312618 24.986873959171188 26.44586481149239 26.11942883621024 98-99 22.426195204213123 25.055594210757825 26.262121032230652 26.2560895527984 100-101 22.601223270171978 24.848178000155407 26.343426362798066 26.20717236687455 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 111.0 1 75.5 2 78.0 3 121.0 4 106.5 5 113.5 6 207.0 7 366.0 8 570.0 9 653.0 10 577.5 11 503.5 12 501.5 13 544.5 14 596.5 15 657.0 16 729.5 17 833.5 18 967.5 19 1157.5 20 1392.0 21 1586.0 22 1886.5 23 2398.5 24 3034.0 25 3815.5 26 5060.5 27 7009.0 28 9223.5 29 12381.0 30 16666.5 31 22788.0 32 31163.0 33 38562.5 34 45519.0 35 53912.0 36 63606.0 37 73296.5 38 82397.5 39 90760.5 40 99376.5 41 108369.0 42 115702.0 43 124720.5 44 134479.0 45 142284.5 46 149332.5 47 157118.0 48 166330.0 49 171551.5 50 170775.0 51 168139.5 52 163160.0 53 157598.5 54 150824.5 55 140885.0 56 129415.5 57 117298.0 58 106278.0 59 92651.5 60 76207.0 61 61702.5 62 49733.0 63 37605.0 64 27312.0 65 20460.5 66 15061.0 67 11146.0 68 8486.5 69 6583.0 70 5206.0 71 4084.0 72 3531.5 73 3386.5 74 2750.5 75 2059.0 76 1413.0 77 806.5 78 460.5 79 267.5 80 154.0 81 112.0 82 55.0 83 25.0 84 14.0 85 12.0 86 7.5 87 4.5 88 3.0 89 1.0 90 0.5 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.1921858546429429 2 0.0 3 0.012062555762152483 4 0.013801302538678966 5 0.0062214533097588245 6 0.10717743802182778 7 0.14040380220451357 8 0.12222846480613517 9 0.14040380220451357 10-11 0.11322229986209566 12-13 0.11391508178086791 14-15 0.11568099647577762 16-17 0.06654781607971284 18-19 0.08010460735294277 20-21 0.036921201082804556 22-23 0.08388094800821123 24-25 0.058112177421721076 26-27 0.0659908737528567 28-29 0.03948856937001945 30-31 0.024260951116221095 32-33 0.03137894573262639 34-35 0.01877303160280938 36-37 0.024097943605921737 38-39 0.03184080034514123 40-41 0.024519046340861748 42-43 0.012823257476882819 44-45 0.026176289362238547 46-47 0.03328070001945223 48-49 0.008775237637782098 50-51 0.015499297437630611 52-53 0.006982155024489161 54-55 0.012334234945984745 56-57 0.00486305739059751 58-59 0.003613333144969099 60-61 0.02286180331948494 62-63 0.010024961883410509 64-65 0.007335337963471104 66-67 0.041077892595438176 68-69 0.08950470711353908 70-71 0.021843006380113952 72-73 0.04376751651537759 74-75 0.08628530878512676 76-77 0.25108590169777756 78-79 0.07852886808671565 80-81 0.015961152050145457 82-83 0.011750124700745379 84-85 0.01210330763972732 86-87 0.26682971040085723 88-89 0.6242915965281574 90-91 0.2694378305656469 92-93 0.3518924628587388 94-95 0.0012089723680535707 96-97 0.004115939635058786 98-99 0.003341653961136836 100-101 0.005053232819280094 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 3680812.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.05837684889074 #Duplication Level Percentage of deduplicated Percentage of total 1 68.50380199845357 31.55173928026569 2 13.34332692282712 12.291439596590422 3 6.242261416684741 8.625252861568693 4 3.5025687279922035 6.4529052165201914 5 2.2478017186130224 5.176504931873143 6 1.4247515569073161 3.937304647444858 7 0.9897430033797412 3.1910169363251946 8 0.7324963277603372 2.6990073523531355 9 0.49946328427370607 2.0704021352336692 >10 2.401684340806519 18.087038946699753 >50 0.07743902220303263 2.4360977030951316 >100 0.032883551676131696 2.7442383183242285 >500 0.0013632318009679776 0.44544163857339997 >1k 4.1489662157201705E-4 0.29161043513235396 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.716791838322631E-5 2 0.0 0.0 0.0 0.0 8.150375514967894E-5 3 0.0 0.0 0.0 0.0 8.150375514967894E-5 4 0.0 0.0 0.0 0.0 1.3583959191613155E-4 5 0.0 0.0 0.0 0.0 1.3583959191613155E-4 6 0.0 0.0 0.0 0.0 1.3583959191613155E-4 7 0.0 0.0 0.0 0.0 1.3583959191613155E-4 8 0.0 0.0 0.0 0.0 1.6300751029935787E-4 9 0.0 0.0 0.0 5.433583676645262E-5 1.6300751029935787E-4 10-11 0.0 0.0 0.0 6.791979595806577E-5 1.6300751029935787E-4 12-13 0.0 0.0 0.0 8.150375514967894E-5 1.6300751029935787E-4 14-15 0.0 0.0 0.0 1.0867167353290523E-4 2.716791838322631E-4 16-17 0.0 0.0 0.0 1.2225563272451838E-4 4.0751877574839466E-4 18-19 0.0 0.0 0.0 1.6300751029935787E-4 4.0751877574839466E-4 20-21 0.0 0.0 0.0 3.260150205987157E-4 4.34686694131621E-4 22-23 0.0 0.0 0.0 5.705262860477526E-4 5.026064900896868E-4 24-25 0.0 0.0 0.0 0.001045964857754213 6.248621228142051E-4 26-27 0.0 0.0 0.0 0.0015349873886522864 6.656140003890446E-4 28-29 0.0 0.0 0.0 0.00813679155577628 6.927819187722709E-4 30-31 0.0 0.0 0.0 0.034421752591547734 7.335337963471104E-4 32-33 0.0 0.0 0.0 0.08644831629542613 8.286215106884025E-4 34-35 0.0 0.0 0.0 0.1560525231932519 9.508771434129208E-4 36-37 0.0 0.0 0.0 0.26964158995352117 9.78045061796147E-4 38-39 0.0 0.0 0.0 0.45129987622296386 9.78045061796147E-4 40-41 0.0 0.0 0.0 0.6591752037322199 0.0010187969393709866 42-43 0.0 0.0 0.0 0.8803763952084486 0.001045964857754213 44-45 0.0 0.0 0.0 1.1487546769571497 0.001059548816945826 46-47 0.0 0.0 0.0 1.466143883469191 0.0010867167353290524 48-49 0.0 0.0 0.0 1.7984211092552405 0.001141052572095505 50-51 0.0 0.0 0.0 2.165554774326969 0.001141052572095505 52-53 0.0 0.0 0.0 2.5398607698518694 0.0012361402864367972 54-55 0.0 0.0 0.0 2.9541171893593043 0.0013312280007780892 56-57 0.0 0.0 0.0 3.431905786005914 0.0013448119599697023 58-59 0.0 0.0 0.0 3.95126129777886 0.0013719798783529288 60-61 0.0 0.0 0.0 4.507986281287933 0.0013855638375445418 62-63 0.0 0.0 0.0 5.072712216760867 0.0013855638375445418 64-65 0.0 0.0 0.0 5.6628673238405 0.0013855638375445418 66-67 0.0 0.0 0.0 6.336889794969153 0.0013855638375445418 68-69 0.0 0.0 0.0 7.084143390099793 0.0013855638375445418 70-71 0.0 0.0 0.0 7.870056933089764 0.0014398996743109943 72-73 0.0 0.0 0.0 8.673398695722575 0.0016300751029935787 74-75 0.0 0.0 0.0 9.485162513054185 0.0016300751029935787 76-77 0.0 1.3583959191613154E-5 0.0 10.347214147313148 0.001643659062185192 78-79 0.0 2.716791838322631E-5 0.0 11.290959712150471 0.001657243021376805 80-81 0.0 2.716791838322631E-5 0.0 12.28332226693458 0.001670826980568418 82-83 0.0 2.716791838322631E-5 0.0 13.289852891155538 0.0018202505316761628 84-85 0.0 2.716791838322631E-5 0.0 14.290651084597638 0.0018202505316761628 86-87 0.0 2.716791838322631E-5 0.0 15.329756042960087 0.0018745863684426153 88-89 0.0 2.716791838322631E-5 0.0 16.421186412128627 0.0018881703276342286 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTACATG 9930 0.0 29.019947 1 GTATCAA 8210 0.0 28.960102 1 TACATGG 10430 0.0 26.624517 2 ACATGGG 10725 0.0 25.406364 3 TCAACGC 9445 0.0 24.577341 4 CAACGCA 9470 0.0 24.508453 5 ATCAACG 9655 0.0 24.141108 3 AACGCAG 10080 0.0 23.213966 6 TATCAAC 10195 0.0 23.001171 2 CATGGGG 7420 0.0 20.66458 4 GAGTACA 7535 0.0 19.816166 1 GGTATCA 6040 0.0 19.761051 1 ACGCAGA 11840 0.0 19.442274 7 CGCAGAG 12065 0.0 19.03932 8 AGTACAT 7245 0.0 18.804152 2 AGAGTAC 8635 0.0 17.587467 10-11 TATACGA 190 1.8781821E-4 17.486443 5 TATACCG 220 2.9395023E-5 17.259346 5 GCAGAGT 13115 0.0 16.682915 9 GTATAAT 1315 0.0 16.63433 1 >>END_MODULE