FastQCFastQC Report
Mon 15 Aug 2016
SRR2920901_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2920901_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3254826
Sequences flagged as poor quality0
Sequence length101
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATCAA50800.041.9350741
GGTATCA29950.041.75631
ATCAACG64750.032.3295333
TCAACGC65400.032.0807954
CAACGCA65900.031.6904035
TATCAAC67750.031.4555682
AACGCAG70050.029.949396
GTACATG98400.027.5450081
TACATGG102300.025.982022
ACGCAGA83750.024.3134357
ACATGGG104650.024.176233
CGCAGAG86250.023.3864148
GAGTACA74950.022.8398881
CATGGGG70250.021.3521394
AGTACAT74400.021.3075752
GCAGAGT99150.019.434229
TACGCTC3455.2750693E-1119.2623624
GTGTAGC18850.018.6673831
GTACGCT2403.113606E-617.8004883
AGAGTAC83500.017.61863510-11
Produced by FastQC (version 0.11.5)