##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2920899_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3052951 Sequences flagged as poor quality 0 Sequence length 101 %GC 48 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.24085384927567 31.0 30.0 34.0 26.0 34.0 2 30.256740118003858 31.0 30.0 34.0 26.0 34.0 3 30.40145387200777 31.0 30.0 34.0 27.0 34.0 4 34.03821843193684 35.0 35.0 37.0 30.0 37.0 5 33.55195153803648 35.0 35.0 37.0 28.0 37.0 6 33.490263682581215 35.0 35.0 37.0 28.0 37.0 7 33.304737612886676 35.0 35.0 37.0 27.0 37.0 8 33.23334308346252 35.0 33.0 37.0 27.0 37.0 9 34.56847915344858 38.0 34.0 39.0 27.0 39.0 10-11 34.37516324369438 38.0 34.0 39.0 27.0 39.0 12-13 34.196875252829145 37.0 34.0 39.0 26.0 39.0 14-15 35.09988335875683 38.0 34.0 40.0 26.0 41.0 16-17 34.97400793527312 38.0 34.0 40.0 25.0 41.0 18-19 34.88341853505018 38.5 34.0 40.0 25.0 41.0 20-21 34.76230457023385 38.0 34.0 40.0 25.0 41.0 22-23 34.614371144509036 38.0 34.0 40.0 24.0 41.0 24-25 34.43606415563171 38.0 33.0 40.0 23.5 41.0 26-27 34.248203787089935 38.0 33.0 40.0 23.0 41.0 28-29 34.19042575527743 38.0 33.0 40.0 22.5 41.0 30-31 34.179779662366016 38.0 33.0 40.0 22.5 41.0 32-33 34.02684451863132 38.0 33.0 40.0 21.5 41.0 34-35 33.85622386340299 38.0 33.0 40.0 20.0 41.0 36-37 33.659805054191835 38.0 33.0 40.0 18.5 41.0 38-39 33.466339453204455 38.0 32.0 40.0 18.0 41.0 40-41 33.23413428515558 38.0 32.0 40.0 16.0 41.0 42-43 33.25642386661299 38.0 32.0 40.0 15.5 41.0 44-45 33.10621723047635 38.0 32.0 40.0 15.0 41.0 46-47 32.852427045176945 38.0 31.5 40.0 12.5 41.0 48-49 32.58225238465996 37.0 31.0 40.0 9.0 41.0 50-51 32.31236138411655 37.0 31.0 40.0 8.0 41.0 52-53 32.047723170139314 37.0 31.0 40.0 7.5 41.0 54-55 31.758437655894248 36.0 30.0 40.0 6.0 41.0 56-57 31.42602534400323 36.0 30.0 39.0 2.0 41.0 58-59 31.091337692612818 35.5 29.0 39.0 2.0 40.5 60-61 30.757730471271895 35.0 29.0 39.0 2.0 40.0 62-63 30.438080401552465 35.0 28.5 39.0 2.0 40.0 64-65 30.029102825430215 35.0 28.0 38.0 2.0 40.0 66-67 29.597468154582238 34.0 28.0 38.0 2.0 40.0 68-69 29.155523786657568 34.0 27.5 37.0 2.0 39.5 70-71 28.72719526124068 34.0 26.0 36.5 2.0 39.0 72-73 28.290441281239037 34.0 26.0 36.0 2.0 39.0 74-75 27.84951412584087 33.0 26.0 35.5 2.0 38.5 76-77 26.422065896242685 31.5 24.0 34.5 2.0 36.0 78-79 27.256602054864295 33.0 26.0 35.0 2.0 37.0 80-81 27.28777369830043 33.0 26.0 35.0 2.0 37.0 82-83 26.94612262037615 33.0 25.0 35.0 2.0 36.0 84-85 26.62976018940363 33.0 25.0 35.0 2.0 36.0 86-87 26.09258451904403 32.5 23.5 35.0 2.0 35.0 88-89 25.726980387172937 32.0 22.0 35.0 2.0 35.0 90-91 25.356893707105026 32.0 20.0 35.0 2.0 35.0 92-93 25.047339279274382 32.0 19.0 34.0 2.0 35.0 94-95 24.667919334440676 32.0 16.5 34.0 2.0 35.0 96-97 24.14200768371323 31.5 4.5 34.0 2.0 35.0 98-99 23.544047873680253 31.0 2.0 34.0 2.0 35.0 100-101 21.35781429181143 28.0 2.0 33.0 2.0 34.5 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 73953.0 3 33925.0 4 17981.0 5 12970.0 6 10836.0 7 10989.0 8 12293.0 9 14284.0 10 16247.0 11 18009.0 12 19674.0 13 21756.0 14 23359.0 15 25078.0 16 26436.0 17 27507.0 18 26646.0 19 25355.0 20 25587.0 21 26448.0 22 28445.0 23 32466.0 24 37300.0 25 44245.0 26 52082.0 27 61702.0 28 72926.0 29 86110.0 30 101230.0 31 119363.0 32 142721.0 33 175704.0 34 222011.0 35 288617.0 36 384676.0 37 450598.0 38 262929.0 39 20491.0 40 2.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.131016837792586 18.73374260027817 13.080614386129119 25.054626175800127 2 16.30458530123805 19.994719862847454 38.00277174445315 25.697923091461345 3 19.890381825829557 23.448926749560048 28.73921082252614 27.92148060208426 4 13.812832882664777 15.663282120699677 35.47339199122556 35.05049300540999 5 14.462149763082854 36.919995217434746 34.008231908554734 14.60962311092767 6 34.66004257501453 34.789269417472546 16.355311187155618 14.19537682035731 7 30.176078513697913 31.181215230397818 20.038443371470557 18.604262884433716 8 27.39766415582439 34.56583024397411 19.232376222297436 18.804129377904065 9 26.860362250124396 15.580055151972976 18.92351640897481 38.63606618892781 10-11 26.248144558582432 25.228018645167456 26.968333745152652 21.555503051097457 12-13 26.63374719868619 22.29681825843378 27.140016829198068 23.929417713681957 14-15 23.382087485290214 24.0155695411137 24.50900836570156 28.093334607894526 16-17 23.820160711967915 27.191844175731678 25.33234193968778 23.655653172612627 18-19 23.825753614698556 26.24295573459178 26.783681267294117 23.147609383415542 20-21 24.450434719068117 25.533500983108816 26.597447374064835 23.418616923758236 22-23 24.067240692568316 25.368846883262275 26.580005474718764 23.983906949450642 24-25 23.82658281697471 25.62123628478743 26.632125863683946 23.920055034553915 26-27 23.635552848891443 25.89070263062841 26.537920211242167 23.935824309237976 28-29 23.727433666017028 25.974756672311067 26.503986715590255 23.793822946081647 30-31 23.857290758857488 25.801875356298037 26.35049242846191 23.990341456382566 32-33 23.57526182803124 25.842988208707503 26.3008749636094 24.280874999651864 34-35 24.03129054239998 25.823018909958193 26.34536882936482 23.800321718277008 36-37 24.183779781406443 25.57443058212985 26.290232747097214 23.9515568893665 38-39 23.91074919249831 25.76277700633616 26.34875226326554 23.977721537899992 40-41 24.05088133149859 25.594489220889848 26.48758272721316 23.867046720398402 42-43 23.918487205560158 25.60458773180422 26.331105269778703 24.14581979285692 44-45 23.88796103733349 25.628781654914036 26.46476544012791 24.01849186762457 46-47 23.964339509936945 25.70773287267935 26.234176624147704 24.093750993236 48-49 23.861147313261736 25.79909479791338 26.159613075490668 24.180144813334216 50-51 23.81924645235856 25.922344186985118 26.21906614237871 24.039343218277615 52-53 24.01434713226875 25.669239932512987 26.23632148936585 24.080091445852418 54-55 23.677328126405055 25.630810723778207 26.442004593134477 24.249856556682264 56-57 23.587650593579095 25.80515982978874 26.25687710063681 24.350312475995352 58-59 23.509693417124026 25.559175130083577 26.399424143708572 24.53170730908382 60-61 23.41553336318017 25.621824166078166 26.528843726569534 24.433798744172126 62-63 23.369999620004535 25.710018252885675 26.502767415257733 24.417214711852058 64-65 23.236301599837788 25.565269575238304 26.384646352940482 24.81378247198343 66-67 23.268381901768873 25.643458928747854 26.3118917203432 24.776267449140075 68-69 23.559637406848182 25.41787895234912 26.35047491218186 24.67200872862084 70-71 23.272080426158652 25.33060008541127 26.30663758904993 25.09068189938015 72-73 23.265839198701926 25.36164243100788 26.24960328168991 25.122915088600283 74-75 23.125209610461393 25.46922418476078 26.17946556749645 25.22610063728137 76-77 23.153967867995124 25.185996762532465 26.420775879011515 25.239259490460896 78-79 23.127341545293273 25.224133530920405 26.372940296567464 25.275584627218862 80-81 23.099735672515003 25.26780418504595 26.25405676431512 25.37840337812393 82-83 22.957643749392933 25.291117018288205 26.300012563079516 25.45122666923934 84-85 22.800382303633278 25.113024449250993 26.323537962963723 25.76305528415201 86-87 22.753487247800187 25.196876124865675 26.26850362978552 25.78113299754861 88-89 22.708141094975403 25.063338744985597 26.19011165714725 26.038408502891752 90-91 22.52797707840282 25.09856102868681 26.251028798475044 26.122433094435326 92-93 22.641811170016936 24.935062245574173 26.334272802339402 26.08885378206949 94-95 22.346513004019265 24.70291162088511 26.454004795079072 26.496570580016552 96-97 22.46203237879326 24.51283341383237 26.478205560968565 26.546928646405803 98-99 22.246077851715853 24.54849640746121 26.37999511932273 26.825430621500203 100-101 22.328026573598144 24.365579256712966 26.485351420308767 26.82104274938012 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 38.0 1 31.5 2 39.0 3 73.0 4 70.5 5 65.5 6 121.0 7 247.5 8 417.5 9 480.0 10 421.0 11 392.0 12 400.5 13 422.5 14 487.0 15 560.0 16 598.0 17 677.5 18 797.0 19 911.0 20 1068.0 21 1322.0 22 1626.5 23 2016.5 24 2529.0 25 3207.5 26 4387.0 27 6117.5 28 8395.5 29 11557.5 30 15805.5 31 21494.0 32 29242.5 33 35073.0 34 39119.0 35 45592.5 36 53947.0 37 61456.5 38 67679.5 39 73066.5 40 77998.5 41 84349.5 42 90051.0 43 96791.0 44 104426.5 45 110724.0 46 116138.0 47 120677.5 48 124922.5 49 128692.0 50 129512.0 51 128854.5 52 129249.5 53 130370.0 54 128825.0 55 122348.0 56 113787.0 57 104338.5 58 95959.5 59 85384.5 60 72118.5 61 59757.0 62 49160.5 63 38105.5 64 28028.5 65 21441.0 66 16336.0 67 12492.5 68 9653.5 69 7333.5 70 5556.0 71 4266.5 72 3338.5 73 2894.5 74 2273.0 75 1699.0 76 1263.5 77 787.0 78 465.0 79 262.5 80 158.0 81 96.0 82 58.5 83 32.0 84 16.0 85 9.5 86 6.5 87 3.0 88 2.0 89 1.5 90 1.0 91 0.0 92 1.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.19250227075377233 2 0.0 3 0.011628093605170866 4 0.014707081771047096 5 0.006420017877784479 6 0.10727325790685799 7 0.14120763811800452 8 0.12365085453385921 9 0.14032324790014644 10-11 0.11380791896103148 12-13 0.1142828692632145 14-15 0.11580598574952561 16-17 0.06639477672586294 18-19 0.0792675676746859 20-21 0.03775036022523781 22-23 0.08404982588977027 24-25 0.05820597841236234 26-27 0.06698437020443498 28-29 0.041058634743892056 30-31 0.023944046268675783 32-33 0.03260779488435943 34-35 0.01935831921311544 36-37 0.023288942403595733 38-39 0.030953657625032303 40-41 0.02459915013375583 42-43 0.012283197470250914 44-45 0.026155021813320946 46-47 0.03465499446273458 48-49 0.00859823822917564 50-51 0.014084733099221048 52-53 0.007058744146237526 54-55 0.011513450428781857 56-57 0.005126187744251382 58-59 0.0034720504849242583 60-61 0.02297776806768271 62-63 0.00926971969088269 64-65 0.006682059423816497 66-67 0.04128792109667007 68-69 0.09025693501140372 70-71 0.02163480514426861 72-73 0.0443013988760383 74-75 0.08680126212310647 76-77 0.2512159546615717 78-79 0.08128201205980705 80-81 0.01596815671132619 82-83 0.011644471201797867 84-85 0.013216720477989984 86-87 0.26672553866734183 88-89 0.6244941369841834 90-91 0.26652900750781783 92-93 0.3539853734960044 94-95 9.66278200993072E-4 96-97 0.003914245593853291 98-99 0.003144498552384234 100-101 0.004798635811711357 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 3052951.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 56.279821760214524 #Duplication Level Percentage of deduplicated Percentage of total 1 75.03581615858998 42.23002359037669 2 12.945668592491039 14.571598419044054 3 5.0131405771475155 8.464159744222835 4 2.3673739873353745 5.329415441880129 5 1.3192412882508644 3.7123332280737213 6 0.8322393769181443 2.8102970276871093 7 0.5312659590802558 2.0929687439014346 8 0.37536082154853107 1.6900192106015213 9 0.26813513653683674 1.3581537922749558 >10 1.2247882839724462 11.819711316717422 >50 0.05929162869009249 2.246169998998832 >100 0.02557604277001598 2.5328157728233345 >500 0.0012846451868196655 0.5039939537597149 >1k 8.175014820849527E-4 0.6383397596382759 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 3.275519325400244E-5 2 0.0 0.0 0.0 0.0 3.275519325400244E-5 3 0.0 0.0 0.0 0.0 3.275519325400244E-5 4 0.0 0.0 0.0 0.0 3.275519325400244E-5 5 0.0 3.275519325400244E-5 0.0 0.0 3.275519325400244E-5 6 0.0 3.275519325400244E-5 0.0 0.0 3.275519325400244E-5 7 0.0 3.275519325400244E-5 0.0 0.0 3.275519325400244E-5 8 0.0 3.275519325400244E-5 0.0 0.0 3.275519325400244E-5 9 0.0 3.275519325400244E-5 0.0 3.275519325400244E-5 3.275519325400244E-5 10-11 0.0 3.275519325400244E-5 0.0 3.275519325400244E-5 3.275519325400244E-5 12-13 0.0 3.275519325400244E-5 0.0 4.9132789881003666E-5 6.551038650800488E-5 14-15 0.0 3.275519325400244E-5 0.0 8.18879831350061E-5 6.551038650800488E-5 16-17 1.637759662700122E-5 3.275519325400244E-5 0.0 9.826557976200732E-5 6.551038650800488E-5 18-19 3.275519325400244E-5 3.275519325400244E-5 0.0 1.637759662700122E-4 6.551038650800488E-5 20-21 3.275519325400244E-5 3.275519325400244E-5 0.0 2.2928635277801707E-4 9.826557976200732E-5 22-23 3.275519325400244E-5 3.275519325400244E-5 0.0 2.7841914265902074E-4 1.3102077301600977E-4 24-25 3.275519325400244E-5 3.275519325400244E-5 0.0 3.76684722421028E-4 1.3102077301600977E-4 26-27 3.275519325400244E-5 3.275519325400244E-5 0.0 8.843902178580659E-4 1.9653115952401464E-4 28-29 3.275519325400244E-5 3.275519325400244E-5 0.0 0.00430730791290132 1.9653115952401464E-4 30-31 3.275519325400244E-5 3.275519325400244E-5 0.0 0.020734037329783545 1.9653115952401464E-4 32-33 3.275519325400244E-5 3.275519325400244E-5 0.0 0.0551269902464861 1.9653115952401464E-4 34-35 3.275519325400244E-5 3.275519325400244E-5 0.0 0.10175400784355858 2.2928635277801707E-4 36-37 3.275519325400244E-5 3.275519325400244E-5 0.0 0.1769763091513752 2.2928635277801707E-4 38-39 3.275519325400244E-5 3.275519325400244E-5 0.0 0.3074729990753209 2.2928635277801707E-4 40-41 3.275519325400244E-5 3.275519325400244E-5 0.0 0.4629619014520705 2.2928635277801707E-4 42-43 3.275519325400244E-5 3.275519325400244E-5 0.0 0.6287850673004578 2.2928635277801707E-4 44-45 3.275519325400244E-5 3.275519325400244E-5 0.0 0.8235965791786373 2.7841914265902074E-4 46-47 3.275519325400244E-5 3.275519325400244E-5 0.0 1.059122796271542 3.275519325400244E-4 48-49 3.275519325400244E-5 3.275519325400244E-5 0.0 1.316463972071612 3.439295291670256E-4 50-51 3.275519325400244E-5 3.275519325400244E-5 0.0 1.598584451568335 4.913278988100366E-4 52-53 3.275519325400244E-5 3.275519325400244E-5 0.0 1.883243458542243 5.404606886910403E-4 54-55 3.275519325400244E-5 3.275519325400244E-5 0.0 2.202016999290195 5.895934785720439E-4 56-57 3.275519325400244E-5 3.275519325400244E-5 0.0 2.57347726838721 5.895934785720439E-4 58-59 3.275519325400244E-5 3.275519325400244E-5 0.0 2.9755308879834628 5.895934785720439E-4 60-61 3.275519325400244E-5 3.275519325400244E-5 0.0 3.4097664849517733 5.895934785720439E-4 62-63 3.275519325400244E-5 3.275519325400244E-5 0.0 3.8588074292708923 5.895934785720439E-4 64-65 3.275519325400244E-5 3.275519325400244E-5 0.0 4.328303991777137 5.895934785720439E-4 66-67 3.275519325400244E-5 3.275519325400244E-5 0.0 4.863900534269957 6.059710751990451E-4 68-69 3.275519325400244E-5 3.275519325400244E-5 0.0 5.455983407529305 6.223486718260463E-4 70-71 3.275519325400244E-5 3.275519325400244E-5 0.0 6.090009305750403 6.223486718260463E-4 72-73 3.275519325400244E-5 3.275519325400244E-5 0.0 6.738005293894334 6.551038650800488E-4 74-75 3.275519325400244E-5 3.275519325400244E-5 0.0 7.394910694603352 6.878590583340512E-4 76-77 3.275519325400244E-5 3.275519325400244E-5 0.0 8.10397874056937 6.878590583340512E-4 78-79 3.275519325400244E-5 3.275519325400244E-5 0.0 8.887876025524157 7.042366549610524E-4 80-81 3.275519325400244E-5 3.275519325400244E-5 0.0 9.71422404093613 7.206142515880536E-4 82-83 3.275519325400244E-5 3.275519325400244E-5 0.0 10.553559490473315 7.206142515880536E-4 84-85 3.275519325400244E-5 3.275519325400244E-5 0.0 11.393206114346414 7.206142515880536E-4 86-87 3.275519325400244E-5 3.275519325400244E-5 0.0 12.259531843124897 8.025022347230598E-4 88-89 3.275519325400244E-5 3.275519325400244E-5 0.0 13.17490847380125 8.843902178580659E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 2560 0.0 49.227688 1 GTATCAA 4845 0.0 44.56209 1 ATCAACG 6045 0.0 34.86686 3 TCAACGC 6045 0.0 34.78833 4 CAACGCA 6175 0.0 33.66659 5 TATCAAC 6650 0.0 32.122013 2 AACGCAG 6535 0.0 31.957228 6 ACGCAGA 7895 0.0 26.2122 7 GTACATG 10095 0.0 25.579792 1 CGCAGAG 8340 0.0 24.755459 8 TACATGG 10305 0.0 24.414045 2 ACATGGG 10240 0.0 23.596304 3 GAGTACA 7525 0.0 22.245373 1 GCAGAGT 9335 0.0 21.405014 9 AGTACAT 7650 0.0 20.414856 2 CATGGGG 7175 0.0 20.046883 4 AGAGTAC 8065 0.0 19.53662 10-11 TATAGCG 235 2.5487207E-6 18.177605 5 CAGAGTA 8695 0.0 17.711723 10-11 GTGGTAT 1620 0.0 17.61326 1 >>END_MODULE